Initializing AMReX (25.06-22-g1d307c2c661a-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.06-22-g1d307c2c661a-dirty) initialized Starting run at 15:58:59 UTC on 2025-08-04. Successfully read inputs file ... Castro git describe: 25.07-101-g9a9d15b8d AMReX git describe: 25.06-22-g1d307c2c6-dirty Microphysics git describe: joss_submit-1-ga350de6c reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014876205 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.34748149 [STEP 1] FAB kilobyte spread across MPI nodes: [60214 ... 60214] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.334701154 [STEP 2] FAB kilobyte spread across MPI nodes: [60214 ... 60214] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.347399658 [STEP 3] FAB kilobyte spread across MPI nodes: [60214 ... 60214] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.361046383 [STEP 4] FAB kilobyte spread across MPI nodes: [60214 ... 60214] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.341344828 [STEP 5] FAB kilobyte spread across MPI nodes: [60214 ... 60214] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.308574517 [STEP 6] FAB kilobyte spread across MPI nodes: [60214 ... 60214] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.309542148 [STEP 7] FAB kilobyte spread across MPI nodes: [60214 ... 60214] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.30760985 [STEP 8] FAB kilobyte spread across MPI nodes: [60214 ... 60214] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.307895832 [STEP 9] FAB kilobyte spread across MPI nodes: [60214 ... 60214] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.309410222 [STEP 10] FAB kilobyte spread across MPI nodes: [60214 ... 60214] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.00794646 seconds Ending run at 15:59:02 UTC on 2025-08-04. Run time = 3.51618648 Run time without initialization = 3.2881549 Average number of zones advanced per microsecond: 0.797 Average number of zones advanced per microsecond per rank: 0.100 TinyProfiler total time across processes [min...avg...max]: 3.5145 ... 3.5157 ... 3.5163 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2491 2.2845 2.3471 66.75% Gravity::make_radial_gravity() 21 0.2989 0.3072 0.3243 9.22% Castro::estTimeStep() 21 0.02711 0.07674 0.1168 3.32% check_for_negative_density() 10 0.009756 0.0737 0.1136 3.23% Castro::initData() 1 0.03697 0.0715 0.1126 3.20% FabArray::ParallelCopy_finish() 41 0.03803 0.059 0.09536 2.71% amrex::Copy() 193 0.06725 0.08407 0.09173 2.61% FabArray::setVal() 143 0.06871 0.0777 0.09103 2.59% Amr::InitAmr() 1 0.0001794 0.006468 0.05031 1.43% DistributionMapping::LeastUsedCPUs() 1 3.081e-05 0.04353 0.05013 1.43% Castro::reset_internal_energy(Fab) 1008 0.04412 0.04645 0.04969 1.41% Castro::normalize_species() 62 0.04515 0.04628 0.04786 1.36% FabArray::ParallelCopy_nowait() 41 0.03428 0.04131 0.04429 1.26% FillPatchIterator::Initialize 41 0.03165 0.03922 0.04174 1.19% StateData::FillBoundary(geom) 41 0.03447 0.0369 0.03892 1.11% Gravity::interpolate_monopole_grav() 21 0.03087 0.03177 0.03485 0.99% Castro::construct_new_gravity_source() 10 0.02283 0.0267 0.0314 0.89% Castro::initialize_do_advance() 10 0.01485 0.01763 0.02147 0.61% Castro::computeTemp() 63 0.01744 0.01818 0.01927 0.55% Castro::initialize_advance() 10 0.006607 0.01186 0.01539 0.44% FabArray::setDomainBndry() 41 0.00671 0.01056 0.01415 0.40% VisMF::Write(FabArray) 2 0.00901 0.009827 0.01314 0.37% FabArray::Saxpy() 20 0.01185 0.01227 0.01312 0.37% MultiFab::contains_nan() 20 0.0105 0.01107 0.01206 0.34% Amr::writePlotFile() 2 0.007903 0.01017 0.01098 0.31% Castro::construct_old_gravity_source() 10 0.007706 0.009708 0.01025 0.29% Castro::construct_new_source() 50 0.006239 0.006814 0.009699 0.28% Castro::initMFs() 1 0.006597 0.007051 0.008857 0.25% Gravity::get_new_grav_vector() 11 0.003314 0.005018 0.006931 0.20% main() 1 0.004122 0.004276 0.004444 0.13% Amr::coarseTimeStep() 10 0.001607 0.002716 0.004008 0.11% Gravity::get_old_grav_vector() 10 0.002063 0.002486 0.002839 0.08% AmrLevel::FillPatch() 41 0.0008555 0.001144 0.001296 0.04% Castro::finalize_do_advance() 10 0.0006074 0.001112 0.001283 0.04% Amr::timeStep() 10 0.0001306 0.0001695 0.0003578 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002678 0.0002805 0.0002979 0.01% Castro::clean_state() 62 0.0001456 0.0001604 0.0001945 0.01% Castro::do_advance_ctu() 10 0.0001351 0.000163 0.0001925 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001008 0.0001135 0.0001427 0.00% StateDataPhysBCFunct::() 41 9.912e-05 0.0001122 0.0001267 0.00% Castro::Castro() 1 5.268e-05 8.302e-05 0.0001089 0.00% Castro::do_old_sources() 10 6.856e-05 8.863e-05 0.0001071 0.00% FabArray::ParallelCopy() 41 7.688e-05 9.409e-05 0.0001043 0.00% FillPatchSingleLevel 41 7.01e-05 7.699e-05 8.705e-05 0.00% Castro::construct_old_source() 50 5.022e-05 6.581e-05 7.739e-05 0.00% Amr::FinalizeInit() 1 3.463e-06 1.38e-05 7.349e-05 0.00% Castro::do_new_sources() 10 5.339e-05 6.232e-05 6.791e-05 0.00% Castro::apply_source_to_state() 20 4.441e-05 5.073e-05 6.769e-05 0.00% Castro::advance() 10 4.28e-05 4.855e-05 5.992e-05 0.00% Castro::subcycle_advance_ctu() 10 3.774e-05 4.721e-05 5.415e-05 0.00% Amr::defBaseLevel() 1 3.298e-05 3.944e-05 5.027e-05 0.00% Castro::construct_old_gravity() 10 3.459e-05 3.817e-05 4.134e-05 0.00% Castro::construct_new_gravity() 10 2.893e-05 3.557e-05 3.94e-05 0.00% Castro::expand_state() 10 2.117e-05 2.31e-05 2.67e-05 0.00% Castro::check_for_nan() 20 2.201e-05 2.377e-05 2.526e-05 0.00% Castro::post_timestep() 10 1.656e-05 1.975e-05 2.348e-05 0.00% Castro::post_init() 1 1.525e-05 1.758e-05 2.269e-05 0.00% Castro::computeNewDt() 9 8.662e-06 9.285e-06 1.121e-05 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.73e-06 5.258e-06 8.206e-06 0.00% Amr::InitializeInit() 1 2.656e-06 4.094e-06 6.968e-06 0.00% Castro::computeInitialDt() 2 3.709e-06 4.42e-06 5.777e-06 0.00% Amr::initialInit() 1 1.306e-06 2.385e-06 4.689e-06 0.00% Amr::init() 1 2.141e-06 2.407e-06 2.914e-06 0.00% Other 257 0.01607 0.01885 0.0208 0.59% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.515 3.516 3.516 100.00% Amr::coarseTimeStep() 10 3.276 3.276 3.276 93.16% Amr::timeStep() 10 3.262 3.263 3.265 92.84% Castro::advance() 10 3.247 3.248 3.248 92.38% Castro::subcycle_advance_ctu() 10 3.159 3.168 3.177 90.36% Castro::do_advance_ctu() 10 3.159 3.168 3.177 90.36% Castro::construct_ctu_hydro_source() 10 2.377 2.38 2.384 67.79% Gravity::make_radial_gravity() 21 0.3158 0.3237 0.3369 9.58% AmrLevel::FillPatch() 41 0.2084 0.2237 0.2394 6.81% Gravity::get_new_grav_vector() 11 0.2279 0.2301 0.2322 6.60% Amr::init() 1 0.1776 0.2211 0.2277 6.48% Amr::initialInit() 1 0.1626 0.2065 0.2133 6.07% Castro::construct_new_gravity() 10 0.2044 0.2063 0.2086 5.93% Castro::construct_old_gravity() 10 0.1931 0.1974 0.2067 5.88% Gravity::get_old_grav_vector() 10 0.1924 0.1966 0.2056 5.85% FillPatchIterator::Initialize 41 0.1706 0.1875 0.2029 5.77% Amr::InitializeInit() 1 0.06043 0.1368 0.1845 5.25% Amr::defBaseLevel() 1 0.06042 0.1368 0.1845 5.25% Castro::initialize_do_advance() 10 0.1603 0.1696 0.1772 5.04% FillPatchIterator::FillFromLevel0() 41 0.1156 0.1377 0.1646 4.68% FillPatchSingleLevel 41 0.1155 0.1376 0.1645 4.68% FabArray::ParallelCopy() 41 0.0795 0.1005 0.1298 3.69% Castro::expand_state() 10 0.1038 0.1152 0.1245 3.54% Castro::clean_state() 62 0.1121 0.1165 0.1206 3.43% Castro::estTimeStep() 21 0.02711 0.07674 0.1168 3.32% Castro::initData() 1 0.04087 0.07545 0.1161 3.30% check_for_negative_density() 10 0.009756 0.0737 0.1136 3.23% Castro::do_old_sources() 10 0.1004 0.104 0.1086 3.09% Amr::FinalizeInit() 1 0.02753 0.06973 0.1043 2.97% FabArray::ParallelCopy_finish() 41 0.03803 0.059 0.09536 2.71% amrex::Copy() 193 0.06725 0.08407 0.09173 2.61% FabArray::setVal() 143 0.06871 0.0777 0.09103 2.59% Castro::initialize_advance() 10 0.06591 0.07553 0.085 2.42% Castro::do_new_sources() 10 0.06105 0.07047 0.08245 2.34% Castro::computeInitialDt() 2 0.0021 0.04433 0.07875 2.24% Castro::computeTemp() 63 0.06183 0.06492 0.06926 1.97% Amr::InitAmr() 1 0.0001821 0.006471 0.05031 1.43% DistributionMapping::SFCProcessorMapDoIt() 1 3.649e-05 0.04353 0.05014 1.43% DistributionMapping::LeastUsedCPUs() 1 3.081e-05 0.04353 0.05013 1.43% Castro::reset_internal_energy(MultiFab) 63 0.04439 0.04674 0.04999 1.42% Castro::reset_internal_energy(Fab) 1008 0.04412 0.04645 0.04969 1.41% Castro::normalize_species() 62 0.04515 0.04628 0.04786 1.36% FabArray::ParallelCopy_nowait() 41 0.03437 0.04138 0.04435 1.26% Castro::construct_new_source() 50 0.0291 0.03352 0.0411 1.17% StateDataPhysBCFunct::() 41 0.03458 0.03701 0.03905 1.11% StateData::FillBoundary(geom) 41 0.03447 0.0369 0.03892 1.11% Castro::finalize_do_advance() 10 0.01159 0.02495 0.03559 1.01% Gravity::interpolate_monopole_grav() 21 0.03087 0.03177 0.03485 0.99% Castro::construct_new_gravity_source() 10 0.02283 0.0267 0.0314 0.89% Castro::post_init() 1 0.02421 0.02483 0.0251 0.71% Amr::writePlotFile() 2 0.02239 0.02263 0.02307 0.66% Castro::post_timestep() 10 0.01513 0.01578 0.01651 0.47% FabArray::setDomainBndry() 41 0.00671 0.01056 0.01415 0.40% Castro::apply_source_to_state() 20 0.01192 0.01232 0.01317 0.37% VisMF::Write(FabArray) 2 0.00901 0.009827 0.01314 0.37% FabArray::Saxpy() 20 0.01185 0.01227 0.01312 0.37% Castro::Castro() 1 0.0109 0.01155 0.01221 0.35% Castro::check_for_nan() 20 0.01053 0.01109 0.01208 0.34% MultiFab::contains_nan() 20 0.0105 0.01107 0.01206 0.34% Castro::construct_old_source() 50 0.007756 0.009773 0.01033 0.29% Castro::construct_old_gravity_source() 10 0.007706 0.009708 0.01025 0.29% Castro::initMFs() 1 0.006597 0.007051 0.008857 0.25% Castro::computeNewDt() 9 0.008574 0.008583 0.008594 0.24% Other 257 0.02654 0.03043 0.03436 0.98% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 29 B 33 B 44 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8539 KiB 8549 KiB 8553 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 7335 KiB 7339 KiB 7342 KiB 7867 KiB 7867 KiB 7867 KiB StateData::define() 32 32 7734 KiB 7743 KiB 7747 KiB 7867 KiB 7867 KiB 7867 KiB Castro::initialize_do_advance() 80 80 4490 KiB 4502 KiB 4510 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 223 KiB 242 KiB 260 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 15 KiB 16 KiB 19 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 3228 KiB 3231 KiB 3233 KiB 3500 KiB 3500 KiB 3500 KiB Gravity::make_radial_gravity() 168 168 229 KiB 234 KiB 244 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 34 KiB 46 KiB 60 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 1999 KiB 2001 KiB 2002 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 97 KiB 98 KiB 99 KiB 1500 KiB 1500 KiB 1500 KiB Gravity::get_old_grav_vector() 80 80 82 KiB 83 KiB 87 KiB 1500 KiB 1500 KiB 1500 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.06-22-g1d307c2c661a-dirty) finalized