Initializing AMReX (25.06-22-g1d307c2c661a-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.06-22-g1d307c2c661a-dirty) initialized Starting run at 05:24:03 UTC on 2025-08-04. Successfully read inputs file ... Castro git describe: 25.07-15-gb7dbecf76 AMReX git describe: 25.06-22-g1d307c2c6-dirty Microphysics git describe: joss_submit-1-ga350de6c reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014576866 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.35244965 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.34251711 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.313970916 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.311489128 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.365663442 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.304479326 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.295792964 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.295866111 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.296207345 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.298109077 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007867285 seconds Ending run at 05:24:06 UTC on 2025-08-04. Run time = 3.379077398 Run time without initialization = 3.189592944 Average number of zones advanced per microsecond: 0.822 Average number of zones advanced per microsecond per rank: 0.103 TinyProfiler total time across processes [min...avg...max]: 3.3772 ... 3.3783 ... 3.3791 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1665 2.2077 2.2475 66.51% Gravity::make_radial_gravity() 21 0.3002 0.306 0.3173 9.39% check_for_negative_density() 10 0.06119 0.1026 0.139 4.11% Castro::initData() 1 0.03718 0.07339 0.1209 3.58% Castro::estTimeStep() 21 0.02396 0.07656 0.1159 3.43% FabArray::ParallelCopy_finish() 41 0.03742 0.05825 0.0968 2.86% amrex::Copy() 193 0.06452 0.08226 0.09607 2.84% FabArray::setVal() 143 0.05487 0.06729 0.07433 2.20% Castro::reset_internal_energy(Fab) 1008 0.04486 0.04595 0.04828 1.43% Castro::normalize_species() 62 0.04509 0.04595 0.04749 1.41% FabArray::ParallelCopy_nowait() 41 0.03582 0.04118 0.04673 1.38% FillPatchIterator::Initialize 41 0.02889 0.03284 0.03577 1.06% StateData::FillBoundary(geom) 41 0.02887 0.03108 0.03268 0.97% Gravity::interpolate_monopole_grav() 21 0.02673 0.02735 0.02877 0.85% Castro::construct_new_gravity_source() 10 0.0229 0.02389 0.02477 0.73% Castro::computeTemp() 63 0.01789 0.01818 0.01897 0.56% Castro::initialize_do_advance() 10 0.01256 0.01643 0.0177 0.52% Castro::initialize_advance() 10 0.005325 0.01083 0.01386 0.41% FabArray::Saxpy() 20 0.0102 0.01184 0.01303 0.39% MultiFab::contains_nan() 20 0.01043 0.01129 0.01251 0.37% FabArray::setDomainBndry() 41 0.008057 0.01009 0.01229 0.36% VisMF::Write(FabArray) 2 0.009144 0.009833 0.01217 0.36% Amr::writePlotFile() 2 0.007811 0.01036 0.01111 0.33% Castro::construct_old_gravity_source() 10 0.006587 0.008762 0.009486 0.28% Castro::initMFs() 1 0.006534 0.006959 0.008746 0.26% Castro::construct_new_source() 50 0.00557 0.005921 0.006247 0.18% main() 1 0.00363 0.004206 0.004668 0.14% Gravity::get_new_grav_vector() 11 0.003043 0.003554 0.003801 0.11% Amr::coarseTimeStep() 10 0.0007832 0.002805 0.003566 0.11% Gravity::get_old_grav_vector() 10 0.001695 0.001977 0.002552 0.08% Castro::finalize_do_advance() 10 0.0006255 0.001263 0.001723 0.05% AmrLevel::FillPatch() 41 0.0008355 0.0009853 0.001353 0.04% Amr::timeStep() 10 0.0001449 0.0002027 0.000489 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002685 0.0002834 0.0003261 0.01% Castro::do_advance_ctu() 10 0.0001437 0.000175 0.0002182 0.01% Castro::clean_state() 62 0.0001434 0.0001542 0.0001633 0.00% StateDataPhysBCFunct::() 41 0.000104 0.000124 0.0001501 0.00% FillPatchIterator::FillFromLevel0() 41 9.585e-05 0.000102 0.0001102 0.00% FabArray::ParallelCopy() 41 7.78e-05 8.793e-05 0.0001051 0.00% Castro::do_old_sources() 10 7.542e-05 9.133e-05 0.0001021 0.00% FillPatchSingleLevel 41 7.201e-05 8.109e-05 9.354e-05 0.00% Castro::Castro() 1 3.872e-05 6.978e-05 8.765e-05 0.00% Amr::FinalizeInit() 1 3.779e-06 1.334e-05 7.454e-05 0.00% Castro::construct_old_source() 50 5.368e-05 6.413e-05 7.256e-05 0.00% Castro::construct_old_gravity() 10 3.224e-05 4.429e-05 7.036e-05 0.00% Castro::do_new_sources() 10 5.228e-05 5.958e-05 6.562e-05 0.00% Castro::subcycle_advance_ctu() 10 4.324e-05 4.814e-05 6.126e-05 0.00% Castro::apply_source_to_state() 20 4.41e-05 4.907e-05 5.689e-05 0.00% Castro::advance() 10 3.97e-05 4.481e-05 4.72e-05 0.00% Amr::defBaseLevel() 1 3.644e-05 4.087e-05 4.576e-05 0.00% Castro::construct_new_gravity() 10 3.115e-05 3.703e-05 4.33e-05 0.00% Castro::expand_state() 10 2.162e-05 2.615e-05 3.664e-05 0.00% Castro::check_for_nan() 20 2.266e-05 2.563e-05 2.769e-05 0.00% Castro::post_timestep() 10 1.458e-05 1.721e-05 2.52e-05 0.00% Castro::post_init() 1 1.584e-05 1.807e-05 2.194e-05 0.00% AmrLevel::AmrLevel(dm) 1 7.312e-06 1.1e-05 1.356e-05 0.00% Castro::computeNewDt() 9 8.279e-06 9.843e-06 1.199e-05 0.00% Amr::InitializeInit() 1 2.537e-06 3.599e-06 7.002e-06 0.00% Amr::init() 1 2.332e-06 2.869e-06 5.379e-06 0.00% Castro::computeInitialDt() 2 3.329e-06 3.718e-06 4.815e-06 0.00% Amr::initialInit() 1 1.703e-06 1.974e-06 2.107e-06 0.00% Other 260 0.01578 0.0188 0.02101 0.62% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.377 3.378 3.379 100.00% Amr::coarseTimeStep() 10 3.177 3.177 3.177 94.02% Amr::timeStep() 10 3.163 3.164 3.166 93.70% Castro::advance() 10 3.147 3.148 3.148 93.17% Castro::subcycle_advance_ctu() 10 3.071 3.076 3.089 91.42% Castro::do_advance_ctu() 10 3.071 3.076 3.089 91.42% Castro::construct_ctu_hydro_source() 10 2.326 2.331 2.334 69.08% Gravity::make_radial_gravity() 21 0.3178 0.3226 0.3308 9.79% AmrLevel::FillPatch() 41 0.1872 0.206 0.2278 6.74% Gravity::get_new_grav_vector() 11 0.2094 0.211 0.2126 6.29% Castro::construct_old_gravity() 10 0.1943 0.1975 0.2046 6.05% Gravity::get_old_grav_vector() 10 0.1936 0.1968 0.2038 6.03% FillPatchIterator::Initialize 41 0.1553 0.174 0.2024 5.99% Amr::init() 1 0.1876 0.1887 0.1891 5.60% Castro::construct_new_gravity() 10 0.1851 0.1858 0.1866 5.52% Amr::initialInit() 1 0.1728 0.1739 0.1743 5.16% Castro::initialize_do_advance() 10 0.1581 0.1635 0.17 5.03% FillPatchIterator::FillFromLevel0() 41 0.1107 0.131 0.1649 4.88% FillPatchSingleLevel 41 0.1106 0.1309 0.1648 4.88% Amr::InitializeInit() 1 0.05873 0.09532 0.1432 4.24% Amr::defBaseLevel() 1 0.05872 0.09532 0.1432 4.24% check_for_negative_density() 10 0.06119 0.1026 0.139 4.11% FabArray::ParallelCopy() 41 0.07983 0.09963 0.1328 3.93% Castro::initData() 1 0.0412 0.07745 0.1249 3.70% Castro::expand_state() 10 0.1048 0.1104 0.1213 3.59% Castro::clean_state() 62 0.1141 0.1155 0.1189 3.52% Castro::estTimeStep() 21 0.02396 0.07656 0.1159 3.43% Amr::FinalizeInit() 1 0.02958 0.07855 0.1154 3.42% Castro::do_old_sources() 10 0.09104 0.09897 0.1085 3.21% FabArray::ParallelCopy_finish() 41 0.03742 0.05825 0.0968 2.86% amrex::Copy() 193 0.06452 0.08226 0.09607 2.84% Castro::computeInitialDt() 2 0.002745 0.05173 0.08856 2.62% FabArray::setVal() 143 0.05487 0.06729 0.07433 2.20% Castro::initialize_advance() 10 0.05459 0.06854 0.07322 2.17% Castro::computeTemp() 63 0.06323 0.06441 0.06753 2.00% Castro::do_new_sources() 10 0.0598 0.06233 0.06616 1.96% Castro::reset_internal_energy(MultiFab) 63 0.04513 0.04623 0.04857 1.44% Castro::reset_internal_energy(Fab) 1008 0.04486 0.04595 0.04828 1.43% Castro::normalize_species() 62 0.04509 0.04595 0.04749 1.41% FabArray::ParallelCopy_nowait() 41 0.03595 0.04129 0.04682 1.39% StateDataPhysBCFunct::() 41 0.029 0.03121 0.03278 0.97% StateData::FillBoundary(geom) 41 0.02887 0.03108 0.03268 0.97% Castro::construct_new_source() 50 0.02883 0.02982 0.03092 0.92% Gravity::interpolate_monopole_grav() 21 0.02673 0.02735 0.02877 0.85% Castro::post_init() 1 0.02641 0.02662 0.02683 0.79% Castro::construct_new_gravity_source() 10 0.0229 0.02389 0.02477 0.73% Amr::writePlotFile() 2 0.02271 0.02283 0.02309 0.68% Castro::finalize_do_advance() 10 0.01431 0.01746 0.02001 0.59% Castro::post_timestep() 10 0.01538 0.01617 0.01832 0.54% Castro::apply_source_to_state() 20 0.01025 0.01188 0.01308 0.39% FabArray::Saxpy() 20 0.0102 0.01184 0.01303 0.39% Castro::check_for_nan() 20 0.01046 0.01131 0.01253 0.37% MultiFab::contains_nan() 20 0.01043 0.01129 0.01251 0.37% FabArray::setDomainBndry() 41 0.008057 0.01009 0.01229 0.36% VisMF::Write(FabArray) 2 0.009144 0.009833 0.01217 0.36% Castro::Castro() 1 0.01073 0.01114 0.01188 0.35% Castro::construct_old_source() 50 0.006641 0.008826 0.009554 0.28% Castro::construct_old_gravity_source() 10 0.006587 0.008762 0.009486 0.28% Castro::initMFs() 1 0.006534 0.006959 0.008746 0.26% Castro::computeNewDt() 9 0.008634 0.008647 0.008655 0.26% AmrLevel::AmrLevel(dm) 1 0.00534 0.005554 0.006341 0.19% Other 260 0.02052 0.02487 0.02792 0.83% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 30 B 34 B 46 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8659 KiB 8669 KiB 8673 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6729 KiB 6736 KiB 6738 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7131 KiB 7139 KiB 7142 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4542 KiB 4548 KiB 4569 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 208 KiB 226 KiB 251 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 16 KiB 17 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2791 KiB 2794 KiB 2796 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 239 KiB 243 KiB 249 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 36 KiB 43 KiB 58 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 79 KiB 80 KiB 80 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 73 KiB 74 KiB 77 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.06-22-g1d307c2c661a-dirty) finalized