Initializing AMReX (25.06-22-g1d307c2c661a-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.06-22-g1d307c2c661a-dirty) initialized Starting run at 15:51:39 UTC on 2025-08-05. Successfully read inputs file ... Castro git describe: 25.07-14-g28a849252 AMReX git describe: 25.06-22-g1d307c2c6-dirty Microphysics git describe: joss_submit-1-ga350de6c reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016097382 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.373780276 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.351466874 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.326211797 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.346114558 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.364000557 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.312571187 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.313536784 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.312981383 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.323999958 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.312918091 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.008417959 seconds Ending run at 15:51:42 UTC on 2025-08-05. Run time = 3.527868276 Run time without initialization = 3.351649101 Average number of zones advanced per microsecond: 0.782 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.5230 ... 3.5265 ... 3.5284 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2177 2.2992 2.3267 65.94% Gravity::make_radial_gravity() 21 0.3107 0.3247 0.3475 9.85% check_for_negative_density() 10 0.06154 0.09346 0.1812 5.14% Castro::initData() 1 0.06015 0.0774 0.1044 2.96% amrex::Copy() 193 0.06989 0.08313 0.08842 2.51% Castro::estTimeStep() 21 0.03966 0.06351 0.08397 2.38% FabArray::setVal() 143 0.06834 0.07436 0.08085 2.29% FabArray::ParallelCopy_finish() 41 0.0643 0.07019 0.07892 2.24% Castro::normalize_species() 62 0.0462 0.04812 0.05074 1.44% Castro::reset_internal_energy(Fab) 1008 0.04478 0.0477 0.05016 1.42% FabArray::ParallelCopy_nowait() 41 0.03977 0.04427 0.04765 1.35% FillPatchIterator::Initialize 41 0.0292 0.03495 0.03936 1.12% StateData::FillBoundary(geom) 41 0.02847 0.0324 0.03512 1.00% Gravity::interpolate_monopole_grav() 21 0.02724 0.02771 0.02818 0.80% Castro::construct_new_gravity_source() 10 0.02445 0.02527 0.02726 0.77% Castro::computeTemp() 63 0.01775 0.01881 0.01961 0.56% Castro::initialize_do_advance() 10 0.01391 0.01778 0.01932 0.55% Amr::coarseTimeStep() 10 0.001636 0.01198 0.01473 0.42% FabArray::Saxpy() 20 0.0115 0.0134 0.01469 0.42% FabArray::setDomainBndry() 41 0.008041 0.01121 0.01406 0.40% VisMF::Write(FabArray) 2 0.009422 0.01013 0.01379 0.39% Castro::initialize_advance() 10 0.01032 0.01153 0.01353 0.38% Amr::writePlotFile() 2 0.008366 0.01181 0.01268 0.36% MultiFab::contains_nan() 20 0.01124 0.012 0.01255 0.36% Castro::construct_old_gravity_source() 10 0.007264 0.009779 0.01081 0.31% Castro::initMFs() 1 0.006347 0.007702 0.01016 0.29% StateData::define() 4 0.005256 0.006282 0.008155 0.23% Castro::construct_new_source() 50 0.006228 0.006494 0.006925 0.20% main() 1 0.003989 0.004743 0.005201 0.15% Gravity::get_new_grav_vector() 11 0.002881 0.003544 0.004077 0.12% Gravity::get_old_grav_vector() 10 0.001499 0.00204 0.002611 0.07% Castro::finalize_do_advance() 10 0.001378 0.001428 0.001528 0.04% AmrLevel::FillPatch() 41 0.0008895 0.001092 0.001244 0.04% Amr::timeStep() 10 0.0001552 0.0002096 0.0004 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002941 0.0003089 0.0003232 0.01% Castro::do_advance_ctu() 10 0.0001587 0.0001876 0.0002114 0.01% Castro::clean_state() 62 0.000143 0.0001642 0.0001839 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001169 0.0001271 0.0001378 0.00% StateDataPhysBCFunct::() 41 0.0001211 0.0001265 0.0001306 0.00% FabArray::ParallelCopy() 41 9.566e-05 0.0001074 0.0001233 0.00% Castro::subcycle_advance_ctu() 10 4.964e-05 7.197e-05 0.0001197 0.00% Castro::do_old_sources() 10 8.016e-05 9.695e-05 0.0001152 0.00% FillPatchSingleLevel 41 8.284e-05 8.809e-05 9.237e-05 0.00% Castro::construct_old_source() 50 6.836e-05 7.753e-05 9.034e-05 0.00% Amr::FinalizeInit() 1 3.778e-06 1.375e-05 7.754e-05 0.00% Castro::do_new_sources() 10 4.681e-05 6.47e-05 7.735e-05 0.00% Castro::apply_source_to_state() 20 4.868e-05 6.054e-05 7.356e-05 0.00% Castro::computeNewDt() 9 1.09e-05 1.957e-05 7.284e-05 0.00% Castro::construct_new_gravity() 10 3.124e-05 4.038e-05 7.129e-05 0.00% Castro::advance() 10 4.854e-05 5.387e-05 6.797e-05 0.00% Castro::Castro() 1 4.133e-05 5.364e-05 6.698e-05 0.00% Amr::defBaseLevel() 1 3.959e-05 4.856e-05 5.847e-05 0.00% Castro::construct_old_gravity() 10 3.668e-05 4.662e-05 5.647e-05 0.00% Castro::expand_state() 10 2.573e-05 2.768e-05 3.294e-05 0.00% Castro::check_for_nan() 20 2.102e-05 2.57e-05 3.242e-05 0.00% Castro::post_timestep() 10 1.876e-05 2.131e-05 3.015e-05 0.00% Castro::post_init() 1 1.619e-05 1.878e-05 2.26e-05 0.00% AmrLevel::AmrLevel(dm) 1 9.923e-06 1.345e-05 2.136e-05 0.00% Amr::InitializeInit() 1 2.83e-06 4.153e-06 7.749e-06 0.00% Amr::init() 1 2.102e-06 3.033e-06 5.915e-06 0.00% Amr::initialInit() 1 1.461e-06 2.43e-06 5.018e-06 0.00% Castro::computeInitialDt() 2 3.609e-06 3.915e-06 4.539e-06 0.00% Other 256 0.01103 0.0163 0.01937 0.55% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.523 3.526 3.528 100.00% Amr::coarseTimeStep() 10 3.338 3.338 3.338 94.61% Amr::timeStep() 10 3.31 3.313 3.323 94.18% Castro::advance() 10 3.293 3.296 3.302 93.59% Castro::subcycle_advance_ctu() 10 3.207 3.215 3.221 91.29% Castro::do_advance_ctu() 10 3.207 3.215 3.221 91.29% Castro::construct_ctu_hydro_source() 10 2.41 2.414 2.421 68.62% Gravity::make_radial_gravity() 21 0.3292 0.3417 0.3606 10.22% AmrLevel::FillPatch() 41 0.2026 0.2275 0.2489 7.05% Gravity::get_new_grav_vector() 11 0.2261 0.228 0.2294 6.50% Castro::construct_old_gravity() 10 0.19 0.2025 0.22 6.23% Gravity::get_old_grav_vector() 10 0.1892 0.2016 0.2188 6.20% FillPatchIterator::Initialize 41 0.1792 0.1936 0.2093 5.93% Castro::construct_new_gravity() 10 0.2004 0.2018 0.2031 5.76% Castro::initialize_do_advance() 10 0.1651 0.1853 0.2023 5.73% check_for_negative_density() 10 0.06154 0.09346 0.1812 5.14% Amr::init() 1 0.1716 0.1748 0.1764 5.00% FillPatchIterator::FillFromLevel0() 41 0.1373 0.1474 0.1608 4.56% FillPatchSingleLevel 41 0.1372 0.1473 0.1607 4.55% Amr::initialInit() 1 0.1551 0.1583 0.16 4.54% Castro::expand_state() 10 0.1138 0.1294 0.1472 4.17% Amr::InitializeInit() 1 0.08458 0.1022 0.1288 3.65% Amr::defBaseLevel() 1 0.08457 0.1022 0.1288 3.65% FabArray::ParallelCopy() 41 0.1068 0.1147 0.1257 3.56% Castro::clean_state() 62 0.1148 0.1204 0.1249 3.54% Castro::initData() 1 0.06389 0.08119 0.1078 3.06% Castro::do_old_sources() 10 0.09769 0.1036 0.1077 3.05% amrex::Copy() 193 0.06989 0.08313 0.08842 2.51% Castro::estTimeStep() 21 0.03966 0.06351 0.08397 2.38% Castro::initialize_advance() 10 0.07156 0.07634 0.08312 2.36% FabArray::setVal() 143 0.06834 0.07436 0.08085 2.29% FabArray::ParallelCopy_finish() 41 0.0643 0.07019 0.07892 2.24% Amr::FinalizeInit() 1 0.02996 0.05615 0.07428 2.11% Castro::do_new_sources() 10 0.06512 0.06729 0.0716 2.03% Castro::computeTemp() 63 0.06282 0.06682 0.06994 1.98% Castro::normalize_species() 62 0.0462 0.04812 0.05074 1.44% Castro::reset_internal_energy(MultiFab) 63 0.04507 0.04801 0.05048 1.43% Castro::reset_internal_energy(Fab) 1008 0.04478 0.0477 0.05016 1.42% FabArray::ParallelCopy_nowait() 41 0.03988 0.04437 0.04775 1.35% Castro::computeInitialDt() 2 0.0023 0.02853 0.04675 1.32% StateDataPhysBCFunct::() 41 0.02859 0.03253 0.03525 1.00% StateData::FillBoundary(geom) 41 0.02847 0.0324 0.03512 1.00% Castro::construct_new_source() 50 0.03068 0.03177 0.03358 0.95% Castro::finalize_do_advance() 10 0.01719 0.02427 0.02943 0.83% Gravity::interpolate_monopole_grav() 21 0.02724 0.02771 0.02818 0.80% Castro::post_init() 1 0.02688 0.02715 0.02744 0.78% Castro::construct_new_gravity_source() 10 0.02445 0.02527 0.02726 0.77% Amr::writePlotFile() 2 0.02477 0.02502 0.02522 0.71% Castro::post_timestep() 10 0.01577 0.01699 0.02073 0.59% Castro::apply_source_to_state() 20 0.01156 0.01346 0.01477 0.42% FabArray::Saxpy() 20 0.0115 0.0134 0.01469 0.42% Castro::Castro() 1 0.009346 0.0113 0.01431 0.41% FabArray::setDomainBndry() 41 0.008041 0.01121 0.01406 0.40% VisMF::Write(FabArray) 2 0.009422 0.01013 0.01379 0.39% Castro::check_for_nan() 20 0.01127 0.01202 0.01258 0.36% MultiFab::contains_nan() 20 0.01124 0.012 0.01255 0.36% Castro::computeNewDt() 9 0.01207 0.01217 0.0122 0.35% Castro::construct_old_source() 50 0.007332 0.009856 0.01089 0.31% Castro::construct_old_gravity_source() 10 0.007264 0.009779 0.01081 0.31% Castro::initMFs() 1 0.006347 0.007702 0.01016 0.29% AmrLevel::AmrLevel(dm) 1 0.005267 0.006296 0.008173 0.23% StateData::define() 4 0.005256 0.006282 0.008155 0.23% Other 256 0.01574 0.02504 0.03175 0.90% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 30 B 40 B 60 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 13 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8649 KiB 8660 KiB 8665 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6777 KiB 6779 KiB 6787 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7128 KiB 7133 KiB 7140 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4540 KiB 4554 KiB 4560 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 217 KiB 245 KiB 272 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 15 KiB 17 KiB 21 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2799 KiB 2802 KiB 2808 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 237 KiB 247 KiB 260 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 46 KiB 51 KiB 58 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2025 KiB 2027 KiB 2028 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 82 KiB 83 KiB 83 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 68 KiB 73 KiB 79 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.06-22-g1d307c2c661a-dirty) finalized