Initializing AMReX (25.06-22-g1d307c2c661a-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.06-22-g1d307c2c661a-dirty) initialized Starting run at 23:54:36 UTC on 2025-08-05. Successfully read inputs file ... Castro git describe: 25.08-4-g34b7471a6 AMReX git describe: 25.06-22-g1d307c2c6-dirty Microphysics git describe: 25.08 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014328578 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.343833276 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.33984914 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.312241168 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.31491045 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.371166527 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.306529418 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.297303842 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.298536185 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.298262025 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.298187367 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007671078 seconds Ending run at 23:54:39 UTC on 2025-08-05. Run time = 3.378293365 Run time without initialization = 3.193513882 Average number of zones advanced per microsecond: 0.821 Average number of zones advanced per microsecond per rank: 0.103 TinyProfiler total time across processes [min...avg...max]: 3.3770 ... 3.3776 ... 3.3783 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1554 2.2260 2.3036 68.19% Gravity::make_radial_gravity() 21 0.288 0.294 0.3115 9.22% check_for_negative_density() 10 0.02703 0.1033 0.1667 4.93% Castro::initData() 1 0.04036 0.07408 0.1209 3.58% Castro::estTimeStep() 21 0.03197 0.07609 0.1075 3.18% FabArray::ParallelCopy_finish() 41 0.04025 0.05248 0.09415 2.79% amrex::Copy() 193 0.06869 0.07962 0.08678 2.57% FabArray::setVal() 143 0.05212 0.06543 0.07134 2.11% Castro::reset_internal_energy(Fab) 1008 0.04447 0.04628 0.05072 1.50% FabArray::ParallelCopy_nowait() 41 0.03599 0.04302 0.05013 1.48% Castro::normalize_species() 62 0.04553 0.0462 0.04678 1.38% FillPatchIterator::Initialize 41 0.02809 0.03278 0.03949 1.17% StateData::FillBoundary(geom) 41 0.02935 0.03134 0.0331 0.98% Gravity::interpolate_monopole_grav() 21 0.02641 0.02681 0.02745 0.81% Castro::construct_new_gravity_source() 10 0.0232 0.02475 0.02702 0.80% Castro::computeTemp() 63 0.01747 0.018 0.01857 0.55% Castro::initialize_do_advance() 10 0.01159 0.0163 0.01794 0.53% FabArray::Saxpy() 20 0.01049 0.01246 0.01386 0.41% Castro::initialize_advance() 10 0.005324 0.01067 0.01349 0.40% VisMF::Write(FabArray) 2 0.009054 0.009796 0.01291 0.38% MultiFab::contains_nan() 20 0.01045 0.01144 0.01263 0.37% FabArray::setDomainBndry() 41 0.007993 0.01027 0.01238 0.37% Castro::construct_old_gravity_source() 10 0.006858 0.009489 0.01021 0.30% Amr::writePlotFile() 2 0.007382 0.00952 0.01017 0.30% Castro::initMFs() 1 0.006561 0.007157 0.008015 0.24% Castro::enforce_min_density() 62 0.005735 0.006112 0.006425 0.19% Castro::construct_new_source() 50 0.005494 0.005975 0.006286 0.19% main() 1 0.003843 0.004129 0.004421 0.13% Gravity::get_new_grav_vector() 11 0.002846 0.003478 0.003764 0.11% Gravity::get_old_grav_vector() 10 0.001491 0.002054 0.002484 0.07% Amr::coarseTimeStep() 10 0.0007764 0.001685 0.002064 0.06% Castro::finalize_do_advance() 10 0.0005624 0.001164 0.001546 0.05% AmrLevel::FillPatch() 41 0.0008108 0.0009748 0.001055 0.03% Amr::timeStep() 10 0.0001356 0.0001756 0.0003847 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002937 0.0003085 0.0003325 0.01% Castro::do_advance_ctu() 10 0.0001463 0.000182 0.0002165 0.01% Castro::clean_state() 62 0.0001335 0.000159 0.0001731 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001034 0.0001133 0.0001331 0.00% StateDataPhysBCFunct::() 41 0.0001043 0.0001138 0.0001243 0.00% Castro::do_old_sources() 10 7.775e-05 9.497e-05 0.0001129 0.00% FabArray::ParallelCopy() 41 8.859e-05 9.855e-05 0.0001113 0.00% Castro::Castro() 1 5.066e-05 7.193e-05 9.021e-05 0.00% Amr::FinalizeInit() 1 3.874e-06 1.459e-05 8.506e-05 0.00% Castro::construct_old_source() 50 5.634e-05 6.854e-05 8.14e-05 0.00% FillPatchSingleLevel 41 6.389e-05 7.084e-05 8.047e-05 0.00% Castro::do_new_sources() 10 4.833e-05 5.976e-05 6.881e-05 0.00% Castro::construct_old_gravity() 10 3.416e-05 4.239e-05 6.306e-05 0.00% Amr::defBaseLevel() 1 4.533e-05 5.154e-05 6.119e-05 0.00% Castro::subcycle_advance_ctu() 10 4.247e-05 5.038e-05 5.913e-05 0.00% Castro::apply_source_to_state() 20 4.376e-05 5.035e-05 5.539e-05 0.00% Castro::advance() 10 4.019e-05 4.642e-05 5.142e-05 0.00% Castro::construct_new_gravity() 10 2.948e-05 3.456e-05 4.035e-05 0.00% Castro::check_for_nan() 20 2.362e-05 2.692e-05 3.101e-05 0.00% Castro::expand_state() 10 2.028e-05 2.616e-05 2.965e-05 0.00% Castro::post_init() 1 1.547e-05 1.86e-05 2.475e-05 0.00% Castro::post_timestep() 10 1.41e-05 1.779e-05 2.262e-05 0.00% Castro::computeNewDt() 9 8.644e-06 9.672e-06 1.105e-05 0.00% Amr::InitializeInit() 1 2.58e-06 3.62e-06 7.335e-06 0.00% Amr::initialInit() 1 1.598e-06 2.299e-06 5.047e-06 0.00% Castro::computeInitialDt() 2 3.255e-06 3.899e-06 4.498e-06 0.00% Amr::init() 1 1.923e-06 2.548e-06 3.56e-06 0.00% Other 199 0.009308 0.01286 0.01475 0.44% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.377 3.378 3.378 100.00% Amr::coarseTimeStep() 10 3.182 3.182 3.182 94.17% Amr::timeStep() 10 3.17 3.17 3.171 93.87% Castro::advance() 10 3.154 3.154 3.155 93.38% Castro::subcycle_advance_ctu() 10 3.078 3.083 3.099 91.72% Castro::do_advance_ctu() 10 3.078 3.083 3.099 91.72% Castro::construct_ctu_hydro_source() 10 2.343 2.351 2.355 69.72% Gravity::make_radial_gravity() 21 0.305 0.3105 0.3249 9.62% AmrLevel::FillPatch() 41 0.1927 0.2035 0.2297 6.80% Gravity::get_new_grav_vector() 11 0.2056 0.2063 0.2077 6.15% FillPatchIterator::Initialize 41 0.1601 0.1704 0.2006 5.94% Castro::construct_old_gravity() 10 0.1805 0.1846 0.1965 5.82% Gravity::get_old_grav_vector() 10 0.1797 0.184 0.1959 5.80% Castro::construct_new_gravity() 10 0.1834 0.1841 0.1848 5.47% Amr::init() 1 0.1832 0.1839 0.1845 5.46% Amr::initialInit() 1 0.1687 0.1697 0.1704 5.04% Castro::initialize_do_advance() 10 0.1611 0.1639 0.1679 4.97% check_for_negative_density() 10 0.02703 0.1033 0.1667 4.93% FillPatchIterator::FillFromLevel0() 41 0.115 0.1273 0.1638 4.85% FillPatchSingleLevel 41 0.1149 0.1272 0.1637 4.84% Amr::InitializeInit() 1 0.0622 0.09556 0.1431 4.24% Amr::defBaseLevel() 1 0.06219 0.09555 0.1431 4.24% FabArray::ParallelCopy() 41 0.08408 0.09571 0.1304 3.86% Castro::initData() 1 0.04386 0.07791 0.1247 3.69% Castro::expand_state() 10 0.1049 0.1106 0.1206 3.57% Castro::clean_state() 62 0.1139 0.1162 0.1202 3.56% Castro::do_old_sources() 10 0.09452 0.1016 0.1111 3.29% Castro::estTimeStep() 21 0.03197 0.07609 0.1075 3.18% Amr::FinalizeInit() 1 0.02602 0.07417 0.1071 3.17% FabArray::ParallelCopy_finish() 41 0.04025 0.05248 0.09415 2.79% amrex::Copy() 193 0.06869 0.07962 0.08678 2.57% Castro::computeInitialDt() 2 0.002113 0.05019 0.08303 2.46% Castro::initialize_advance() 10 0.05175 0.06822 0.07267 2.15% FabArray::setVal() 143 0.05212 0.06543 0.07134 2.11% Castro::computeTemp() 63 0.06231 0.06459 0.06916 2.05% Castro::do_new_sources() 10 0.05856 0.0637 0.06916 2.05% Castro::reset_internal_energy(MultiFab) 63 0.04476 0.04659 0.05106 1.51% Castro::reset_internal_energy(Fab) 1008 0.04447 0.04628 0.05072 1.50% FabArray::ParallelCopy_nowait() 41 0.03613 0.04313 0.05023 1.49% Castro::normalize_species() 62 0.04553 0.0462 0.04678 1.38% Castro::construct_new_source() 50 0.02904 0.03072 0.0333 0.99% StateDataPhysBCFunct::() 41 0.02945 0.03145 0.03322 0.98% StateData::FillBoundary(geom) 41 0.02935 0.03134 0.0331 0.98% Gravity::interpolate_monopole_grav() 21 0.02641 0.02681 0.02745 0.81% Castro::construct_new_gravity_source() 10 0.0232 0.02475 0.02702 0.80% Castro::post_init() 1 0.0231 0.02345 0.02359 0.70% Castro::finalize_do_advance() 10 0.01287 0.0185 0.02318 0.69% Amr::writePlotFile() 2 0.02183 0.02197 0.02226 0.66% Castro::post_timestep() 10 0.01554 0.01577 0.0162 0.48% Castro::apply_source_to_state() 20 0.01053 0.01251 0.01392 0.41% FabArray::Saxpy() 20 0.01049 0.01246 0.01386 0.41% VisMF::Write(FabArray) 2 0.009054 0.009796 0.01291 0.38% Castro::check_for_nan() 20 0.01047 0.01146 0.01266 0.37% MultiFab::contains_nan() 20 0.01045 0.01144 0.01263 0.37% FabArray::setDomainBndry() 41 0.007993 0.01027 0.01238 0.37% Castro::Castro() 1 0.01005 0.01095 0.01177 0.35% Castro::construct_old_source() 50 0.006915 0.009558 0.01029 0.30% Castro::construct_old_gravity_source() 10 0.006858 0.009489 0.01021 0.30% Castro::computeNewDt() 9 0.008579 0.008586 0.008595 0.25% Castro::initMFs() 1 0.006561 0.007157 0.008015 0.24% Castro::enforce_min_density() 62 0.005735 0.006112 0.006425 0.19% Other 199 0.01938 0.02431 0.02758 0.82% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 34 B 39 B 54 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 15 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8660 KiB 8669 KiB 8673 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6744 KiB 6747 KiB 6749 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7133 KiB 7140 KiB 7143 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4552 KiB 4559 KiB 4579 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 215 KiB 226 KiB 254 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 16 KiB 16 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2797 KiB 2801 KiB 2802 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 230 KiB 234 KiB 245 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 37 KiB 43 KiB 59 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 78 KiB 78 KiB 79 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 68 KiB 69 KiB 74 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.06-22-g1d307c2c661a-dirty) finalized