Initializing AMReX (25.06-22-g1d307c2c661a-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.06-22-g1d307c2c661a-dirty) initialized Starting run at 05:17:21 UTC on 2025-08-05. Successfully read inputs file ... Castro git describe: 25.07-15-gb7dbecf76 AMReX git describe: 25.06-22-g1d307c2c6-dirty Microphysics git describe: joss_submit-1-ga350de6c reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014989893 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.339471401 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.34618711 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.324898151 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.316871523 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.355976143 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.306185408 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.323205263 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.29804252 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.301637536 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.298890142 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007497888 seconds Ending run at 05:17:24 UTC on 2025-08-05. Run time = 3.411802224 Run time without initialization = 3.224749788 Average number of zones advanced per microsecond: 0.813 Average number of zones advanced per microsecond per rank: 0.102 TinyProfiler total time across processes [min...avg...max]: 3.4054 ... 3.4090 ... 3.4119 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1917 2.2338 2.2775 66.75% Gravity::make_radial_gravity() 21 0.296 0.3036 0.3121 9.15% check_for_negative_density() 10 0.05404 0.1013 0.146 4.28% Castro::initData() 1 0.03697 0.07553 0.1135 3.33% Castro::estTimeStep() 21 0.03042 0.07069 0.1133 3.32% amrex::Copy() 193 0.05885 0.08212 0.09734 2.85% FabArray::ParallelCopy_finish() 41 0.03568 0.0601 0.0958 2.81% FabArray::setVal() 143 0.05815 0.06689 0.07414 2.17% Castro::normalize_species() 62 0.04536 0.04826 0.0655 1.92% Castro::reset_internal_energy(Fab) 1008 0.04215 0.04609 0.05126 1.50% FabArray::ParallelCopy_nowait() 41 0.03461 0.04069 0.04255 1.25% FillPatchIterator::Initialize 41 0.02604 0.03361 0.03668 1.08% StateData::FillBoundary(geom) 41 0.02935 0.03173 0.03475 1.02% Gravity::interpolate_monopole_grav() 21 0.02649 0.02751 0.02977 0.87% Castro::construct_new_gravity_source() 10 0.02256 0.02397 0.02508 0.73% Castro::computeTemp() 63 0.01706 0.01807 0.01889 0.55% Castro::initialize_do_advance() 10 0.01116 0.01672 0.01824 0.53% MultiFab::contains_nan() 20 0.01082 0.01203 0.01459 0.43% Castro::initialize_advance() 10 0.005254 0.0108 0.01387 0.41% Amr::writePlotFile() 2 0.007447 0.0106 0.01306 0.38% FabArray::Saxpy() 20 0.01032 0.01183 0.01301 0.38% VisMF::Write(FabArray) 2 0.008446 0.009742 0.0126 0.37% FabArray::setDomainBndry() 41 0.007613 0.01041 0.01231 0.36% Castro::initMFs() 1 0.006483 0.007743 0.01045 0.31% Castro::construct_old_gravity_source() 10 0.006375 0.008606 0.008978 0.26% StateData::define() 4 0.005462 0.006401 0.008365 0.25% Castro::construct_new_source() 50 0.00578 0.00593 0.006184 0.18% Amr::coarseTimeStep() 10 0.00136 0.004352 0.005719 0.17% main() 1 0.003885 0.004191 0.005304 0.16% Gravity::get_new_grav_vector() 11 0.002603 0.0036 0.004213 0.12% Gravity::get_old_grav_vector() 10 0.00175 0.002225 0.002632 0.08% Castro::finalize_do_advance() 10 0.0006173 0.001211 0.001779 0.05% AmrLevel::FillPatch() 41 0.0007176 0.001118 0.00129 0.04% Amr::timeStep() 10 0.0001182 0.0001888 0.0005021 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002691 0.0002959 0.0003438 0.01% Castro::do_advance_ctu() 10 0.0001518 0.0001672 0.0001963 0.01% Castro::clean_state() 62 0.0001443 0.0001562 0.0001765 0.01% StateDataPhysBCFunct::() 41 0.0001019 0.0001173 0.0001321 0.00% FillPatchIterator::FillFromLevel0() 41 9.705e-05 0.0001068 0.0001198 0.00% FabArray::ParallelCopy() 41 7.997e-05 8.832e-05 0.0001032 0.00% FillPatchSingleLevel 41 7.411e-05 7.975e-05 9.946e-05 0.00% Castro::do_old_sources() 10 6.825e-05 8.58e-05 9.812e-05 0.00% Amr::FinalizeInit() 1 3.268e-06 1.452e-05 8.742e-05 0.00% Castro::Castro() 1 4.432e-05 5.748e-05 7.18e-05 0.00% Castro::construct_old_source() 50 4.466e-05 6.159e-05 7.022e-05 0.00% Castro::do_new_sources() 10 5.697e-05 6.053e-05 6.915e-05 0.00% Castro::apply_source_to_state() 20 3.903e-05 5.1e-05 6.162e-05 0.00% Castro::advance() 10 3.894e-05 4.83e-05 5.85e-05 0.00% Amr::defBaseLevel() 1 3.687e-05 4.382e-05 5.154e-05 0.00% Castro::subcycle_advance_ctu() 10 4.054e-05 4.515e-05 4.894e-05 0.00% Castro::construct_old_gravity() 10 3.593e-05 4.132e-05 4.883e-05 0.00% Castro::construct_new_gravity() 10 2.834e-05 3.462e-05 4.071e-05 0.00% Castro::check_for_nan() 20 2.17e-05 2.706e-05 3.492e-05 0.00% Castro::expand_state() 10 2.117e-05 2.546e-05 3.124e-05 0.00% AmrLevel::AmrLevel(dm) 1 9.16e-06 1.46e-05 2.768e-05 0.00% Castro::post_timestep() 10 1.35e-05 1.684e-05 2.22e-05 0.00% Amr::InitializeInit() 1 2.839e-06 5.651e-06 1.956e-05 0.00% Castro::post_init() 1 1.323e-05 1.518e-05 1.792e-05 0.00% Castro::computeNewDt() 9 8.276e-06 1.037e-05 1.28e-05 0.00% Amr::init() 1 2.117e-06 3.008e-06 7.068e-06 0.00% Castro::computeInitialDt() 2 3.022e-06 3.559e-06 4.122e-06 0.00% Amr::initialInit() 1 1.435e-06 1.92e-06 2.853e-06 0.00% Other 256 0.01042 0.01564 0.01932 0.57% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.405 3.409 3.412 100.00% Amr::coarseTimeStep() 10 3.212 3.212 3.212 94.14% Amr::timeStep() 10 3.197 3.198 3.201 93.82% Castro::advance() 10 3.181 3.181 3.182 93.27% Castro::subcycle_advance_ctu() 10 3.104 3.109 3.118 91.39% Castro::do_advance_ctu() 10 3.104 3.109 3.118 91.39% Castro::construct_ctu_hydro_source() 10 2.352 2.357 2.363 69.27% Gravity::make_radial_gravity() 21 0.3118 0.3199 0.3276 9.60% AmrLevel::FillPatch() 41 0.1907 0.2094 0.2195 6.43% Gravity::get_new_grav_vector() 11 0.2036 0.2079 0.2094 6.14% Castro::construct_old_gravity() 10 0.1935 0.1989 0.2047 6.00% Gravity::get_old_grav_vector() 10 0.1928 0.1981 0.204 5.98% FillPatchIterator::Initialize 41 0.1609 0.177 0.196 5.74% Castro::construct_new_gravity() 10 0.1809 0.1854 0.1874 5.49% Amr::init() 1 0.1815 0.1849 0.1869 5.48% Castro::initialize_do_advance() 10 0.1593 0.1672 0.1742 5.10% Amr::initialInit() 1 0.1662 0.1696 0.1717 5.03% FillPatchIterator::FillFromLevel0() 41 0.1135 0.133 0.1616 4.74% FillPatchSingleLevel 41 0.1134 0.1329 0.1615 4.73% check_for_negative_density() 10 0.05404 0.1013 0.146 4.28% Castro::clean_state() 62 0.1109 0.118 0.1405 4.12% Amr::InitializeInit() 1 0.06113 0.1005 0.1399 4.10% Amr::defBaseLevel() 1 0.06113 0.1005 0.1399 4.10% FabArray::ParallelCopy() 41 0.07842 0.101 0.1306 3.83% Castro::expand_state() 10 0.1066 0.1123 0.1183 3.47% Castro::initData() 1 0.04062 0.07918 0.1171 3.43% Castro::estTimeStep() 21 0.03042 0.07069 0.1133 3.32% Amr::FinalizeInit() 1 0.0264 0.06909 0.1093 3.20% Castro::do_old_sources() 10 0.09156 0.101 0.1077 3.16% amrex::Copy() 193 0.05885 0.08212 0.09734 2.85% FabArray::ParallelCopy_finish() 41 0.03568 0.0601 0.0958 2.81% Castro::computeInitialDt() 2 0.002146 0.04491 0.08512 2.49% FabArray::setVal() 143 0.05815 0.06689 0.07414 2.17% Castro::initialize_advance() 10 0.05932 0.06909 0.07403 2.17% Castro::computeTemp() 63 0.05951 0.06446 0.07007 2.05% Castro::do_new_sources() 10 0.06031 0.06297 0.06727 1.97% Castro::normalize_species() 62 0.04536 0.04826 0.0655 1.92% Castro::reset_internal_energy(MultiFab) 63 0.04245 0.04638 0.05161 1.51% Castro::reset_internal_energy(Fab) 1008 0.04215 0.04609 0.05126 1.50% FabArray::ParallelCopy_nowait() 41 0.03472 0.04078 0.04266 1.25% StateDataPhysBCFunct::() 41 0.02948 0.03185 0.03487 1.02% StateData::FillBoundary(geom) 41 0.02935 0.03173 0.03475 1.02% Castro::construct_new_source() 50 0.02838 0.0299 0.03122 0.91% Gravity::interpolate_monopole_grav() 21 0.02649 0.02751 0.02977 0.87% Castro::construct_new_gravity_source() 10 0.02256 0.02397 0.02508 0.73% Castro::post_init() 1 0.0236 0.02368 0.02377 0.70% Amr::writePlotFile() 2 0.02278 0.02295 0.0233 0.68% Castro::finalize_do_advance() 10 0.01274 0.01836 0.02192 0.64% Castro::post_timestep() 10 0.01472 0.0163 0.01982 0.58% Castro::check_for_nan() 20 0.01086 0.01206 0.01463 0.43% MultiFab::contains_nan() 20 0.01082 0.01203 0.01459 0.43% Castro::Castro() 1 0.009881 0.01141 0.01453 0.43% Castro::apply_source_to_state() 20 0.01036 0.01189 0.01307 0.38% FabArray::Saxpy() 20 0.01032 0.01183 0.01301 0.38% VisMF::Write(FabArray) 2 0.008446 0.009742 0.0126 0.37% FabArray::setDomainBndry() 41 0.007613 0.01041 0.01231 0.36% Castro::initMFs() 1 0.006483 0.007743 0.01045 0.31% Castro::construct_old_source() 50 0.006419 0.008667 0.009048 0.27% Castro::construct_old_gravity_source() 10 0.006375 0.008606 0.008978 0.26% Castro::computeNewDt() 9 0.00864 0.008647 0.008658 0.25% AmrLevel::AmrLevel(dm) 1 0.005474 0.006415 0.008385 0.25% StateData::define() 4 0.005462 0.006401 0.008365 0.25% Other 256 0.01488 0.02392 0.02992 0.88% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 34 B 40 B 61 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8649 KiB 8659 KiB 8662 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6738 KiB 6747 KiB 6754 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7123 KiB 7133 KiB 7139 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4550 KiB 4555 KiB 4569 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 209 KiB 228 KiB 240 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 14 KiB 16 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2794 KiB 2798 KiB 2801 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 233 KiB 239 KiB 244 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 35 KiB 43 KiB 57 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2024 KiB 2027 KiB 2028 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 76 KiB 78 KiB 78 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 72 KiB 74 KiB 76 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.06-22-g1d307c2c661a-dirty) finalized