Initializing AMReX (25.06-22-g1d307c2c661a-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.06-22-g1d307c2c661a-dirty) initialized Starting run at 21:37:09 UTC on 2025-08-06. Successfully read inputs file ... Castro git describe: 25.08-4-g34b7471a6 AMReX git describe: 25.06-22-g1d307c2c6-dirty Microphysics git describe: 25.08 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014486566 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.343231436 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.341641565 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.313928178 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.312852912 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.358267704 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.307201626 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.300356398 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.299651407 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.299032538 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.298641028 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007552953 seconds Ending run at 21:37:12 UTC on 2025-08-06. Run time = 3.359535548 Run time without initialization = 3.187160823 Average number of zones advanced per microsecond: 0.823 Average number of zones advanced per microsecond per rank: 0.103 TinyProfiler total time across processes [min...avg...max]: 3.3577 ... 3.3590 ... 3.3596 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1522 2.2347 2.2993 68.44% Gravity::make_radial_gravity() 21 0.2894 0.2958 0.3064 9.12% check_for_negative_density() 10 0.02748 0.09192 0.1716 5.11% Castro::initData() 1 0.0374 0.07177 0.1079 3.21% Castro::estTimeStep() 21 0.02955 0.06483 0.1028 3.06% FabArray::ParallelCopy_finish() 41 0.03867 0.05043 0.08935 2.66% amrex::Copy() 193 0.06329 0.07677 0.08621 2.57% FabArray::setVal() 143 0.05445 0.0665 0.07281 2.17% Castro::normalize_species() 62 0.04539 0.04748 0.05283 1.57% Castro::reset_internal_energy(Fab) 1008 0.04367 0.04622 0.04889 1.46% FabArray::ParallelCopy_nowait() 41 0.03545 0.04153 0.04747 1.41% FillPatchIterator::Initialize 41 0.02746 0.03208 0.03427 1.02% StateData::FillBoundary(geom) 41 0.02861 0.03077 0.03321 0.99% Gravity::interpolate_monopole_grav() 21 0.02673 0.027 0.02737 0.81% Castro::construct_new_gravity_source() 10 0.02352 0.02473 0.02636 0.78% Castro::computeTemp() 63 0.01752 0.01833 0.019 0.57% Castro::initialize_do_advance() 10 0.01168 0.01648 0.01787 0.53% Castro::initialize_advance() 10 0.005599 0.01087 0.01403 0.42% FabArray::Saxpy() 20 0.011 0.01253 0.01374 0.41% MultiFab::contains_nan() 20 0.01065 0.01164 0.01286 0.38% Amr::writePlotFile() 2 0.00766 0.01007 0.01244 0.37% VisMF::Write(FabArray) 2 0.008449 0.00955 0.01202 0.36% FabArray::setDomainBndry() 41 0.006553 0.009482 0.01194 0.36% Castro::construct_old_gravity_source() 10 0.007094 0.009505 0.01012 0.30% Castro::initMFs() 1 0.006658 0.007104 0.008206 0.24% Castro::enforce_min_density() 62 0.005869 0.006193 0.00662 0.20% Castro::construct_new_source() 50 0.005733 0.006093 0.006461 0.19% main() 1 0.003943 0.004229 0.004446 0.13% Gravity::get_new_grav_vector() 11 0.002848 0.003363 0.003697 0.11% Amr::coarseTimeStep() 10 0.001092 0.001988 0.002974 0.09% Gravity::get_old_grav_vector() 10 0.00173 0.00206 0.002488 0.07% Castro::finalize_do_advance() 10 0.0005052 0.001176 0.001751 0.05% AmrLevel::FillPatch() 41 0.0007909 0.001087 0.001218 0.04% Amr::timeStep() 10 0.0001195 0.0001838 0.0004387 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002728 0.0002948 0.0003162 0.01% Castro::do_advance_ctu() 10 0.0001309 0.0001622 0.000194 0.01% Castro::clean_state() 62 0.0001411 0.0001643 0.0001853 0.01% StateDataPhysBCFunct::() 41 9.816e-05 0.0001127 0.0001402 0.00% FillPatchIterator::FillFromLevel0() 41 9.583e-05 0.0001072 0.0001179 0.00% Castro::Castro() 1 5.378e-05 8.166e-05 0.000108 0.00% Castro::do_old_sources() 10 6.429e-05 8.99e-05 0.0001061 0.00% FabArray::ParallelCopy() 41 8.155e-05 9.319e-05 0.0001055 0.00% Amr::FinalizeInit() 1 3.805e-06 1.52e-05 9.08e-05 0.00% Castro::construct_old_source() 50 4.035e-05 6.405e-05 7.762e-05 0.00% Castro::do_new_sources() 10 4.79e-05 6.048e-05 7.46e-05 0.00% FillPatchSingleLevel 41 6.073e-05 6.837e-05 7.438e-05 0.00% Castro::advance() 10 4.242e-05 5.215e-05 6.113e-05 0.00% Castro::subcycle_advance_ctu() 10 4.237e-05 4.911e-05 6.062e-05 0.00% Castro::apply_source_to_state() 20 4.004e-05 4.851e-05 5.992e-05 0.00% Amr::defBaseLevel() 1 3.917e-05 4.37e-05 4.991e-05 0.00% Castro::construct_old_gravity() 10 3.331e-05 3.944e-05 4.748e-05 0.00% Castro::construct_new_gravity() 10 2.884e-05 3.477e-05 4.575e-05 0.00% Castro::check_for_nan() 20 2.232e-05 2.7e-05 3.64e-05 0.00% Castro::expand_state() 10 1.95e-05 2.345e-05 3.062e-05 0.00% Castro::post_timestep() 10 1.398e-05 1.747e-05 2.103e-05 0.00% Castro::post_init() 1 1.485e-05 1.739e-05 2.042e-05 0.00% Castro::computeNewDt() 9 8.516e-06 1.015e-05 1.293e-05 0.00% Castro::computeInitialDt() 2 3.295e-06 5.621e-06 1.091e-05 0.00% Amr::InitializeInit() 1 2.392e-06 3.195e-06 6.096e-06 0.00% Amr::initialInit() 1 1.591e-06 2.276e-06 4.874e-06 0.00% Amr::init() 1 1.819e-06 2.264e-06 3.022e-06 0.00% Other 199 0.01016 0.01275 0.01441 0.43% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.358 3.359 3.36 100.00% Amr::coarseTimeStep() 10 3.175 3.175 3.175 94.51% Amr::timeStep() 10 3.163 3.164 3.164 94.19% Castro::advance() 10 3.146 3.147 3.148 93.69% Castro::subcycle_advance_ctu() 10 3.068 3.075 3.087 91.90% Castro::do_advance_ctu() 10 3.068 3.075 3.087 91.89% Castro::construct_ctu_hydro_source() 10 2.342 2.348 2.354 70.06% Gravity::make_radial_gravity() 21 0.3057 0.3116 0.3193 9.50% AmrLevel::FillPatch() 41 0.1827 0.1963 0.2129 6.34% Gravity::get_new_grav_vector() 11 0.2064 0.2093 0.211 6.28% Castro::construct_old_gravity() 10 0.1793 0.1829 0.1902 5.66% Gravity::get_old_grav_vector() 10 0.1785 0.1823 0.1896 5.64% Castro::construct_new_gravity() 10 0.185 0.187 0.1883 5.61% FillPatchIterator::Initialize 41 0.151 0.1648 0.1879 5.59% Amr::init() 1 0.1706 0.1716 0.172 5.12% check_for_negative_density() 10 0.02748 0.09192 0.1716 5.11% Castro::initialize_do_advance() 10 0.154 0.1625 0.1684 5.01% Amr::initialInit() 1 0.1556 0.1571 0.1576 4.69% FillPatchIterator::FillFromLevel0() 41 0.1136 0.1232 0.1539 4.58% FillPatchSingleLevel 41 0.1135 0.1231 0.1538 4.58% Amr::InitializeInit() 1 0.05905 0.09369 0.1298 3.86% Amr::defBaseLevel() 1 0.05904 0.09368 0.1298 3.86% FabArray::ParallelCopy() 41 0.08087 0.09215 0.125 3.72% Castro::clean_state() 62 0.113 0.1178 0.1244 3.70% Castro::expand_state() 10 0.09897 0.1088 0.1182 3.52% Castro::initData() 1 0.04152 0.07563 0.1114 3.32% Castro::estTimeStep() 21 0.02955 0.06483 0.1028 3.06% Castro::do_old_sources() 10 0.08923 0.09561 0.1025 3.05% Amr::FinalizeInit() 1 0.02579 0.06338 0.09832 2.93% FabArray::ParallelCopy_finish() 41 0.03867 0.05043 0.08935 2.66% amrex::Copy() 193 0.06329 0.07677 0.08621 2.57% Castro::initialize_advance() 10 0.05563 0.06905 0.07547 2.25% Castro::computeInitialDt() 2 0.002105 0.03924 0.07421 2.21% FabArray::setVal() 143 0.05445 0.0665 0.07281 2.17% Castro::do_new_sources() 10 0.06051 0.06445 0.07068 2.10% Castro::computeTemp() 63 0.0615 0.06485 0.0682 2.03% Castro::normalize_species() 62 0.04539 0.04748 0.05283 1.57% Castro::reset_internal_energy(MultiFab) 63 0.04398 0.04652 0.0492 1.46% Castro::reset_internal_energy(Fab) 1008 0.04367 0.04622 0.04889 1.46% FabArray::ParallelCopy_nowait() 41 0.03557 0.04163 0.04756 1.42% StateDataPhysBCFunct::() 41 0.02873 0.03088 0.03335 0.99% StateData::FillBoundary(geom) 41 0.02861 0.03077 0.03321 0.99% Castro::construct_new_source() 50 0.02944 0.03083 0.03282 0.98% Gravity::interpolate_monopole_grav() 21 0.02673 0.027 0.02737 0.81% Castro::construct_new_gravity_source() 10 0.02352 0.02473 0.02636 0.78% Castro::post_init() 1 0.02339 0.02364 0.0238 0.71% Castro::finalize_do_advance() 10 0.01202 0.01813 0.02298 0.68% Amr::writePlotFile() 2 0.02202 0.02217 0.02264 0.67% Castro::post_timestep() 10 0.01531 0.01639 0.01723 0.51% Castro::apply_source_to_state() 20 0.01104 0.01258 0.0138 0.41% FabArray::Saxpy() 20 0.011 0.01253 0.01374 0.41% Castro::check_for_nan() 20 0.01067 0.01167 0.01289 0.38% MultiFab::contains_nan() 20 0.01065 0.01164 0.01286 0.38% Castro::Castro() 1 0.01072 0.01125 0.01207 0.36% VisMF::Write(FabArray) 2 0.008449 0.00955 0.01202 0.36% FabArray::setDomainBndry() 41 0.006553 0.009482 0.01194 0.36% Castro::construct_old_source() 50 0.007134 0.009569 0.01019 0.30% Castro::construct_old_gravity_source() 10 0.007094 0.009505 0.01012 0.30% Castro::computeNewDt() 9 0.008628 0.00865 0.00867 0.26% Castro::initMFs() 1 0.006658 0.007104 0.008206 0.24% Castro::enforce_min_density() 62 0.005869 0.006193 0.00662 0.20% Other 199 0.02 0.0243 0.02704 0.80% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 28 B 36 B 50 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 15 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8659 KiB 8669 KiB 8673 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6764 KiB 6771 KiB 6777 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7131 KiB 7140 KiB 7142 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4565 KiB 4573 KiB 4595 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 203 KiB 220 KiB 240 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 14 KiB 16 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2806 KiB 2810 KiB 2811 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 232 KiB 236 KiB 242 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 37 KiB 41 KiB 58 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 78 KiB 80 KiB 80 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 68 KiB 69 KiB 72 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.06-22-g1d307c2c661a-dirty) finalized