Initializing AMReX (25.06-22-g1d307c2c661a-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.06-22-g1d307c2c661a-dirty) initialized Starting run at 05:21:43 UTC on 2025-08-06. Successfully read inputs file ... Castro git describe: 25.08-2-g4212de214 AMReX git describe: 25.06-22-g1d307c2c6-dirty Microphysics git describe: 25.08 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014368156 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.34259952 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.344268758 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.31266893 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.314263551 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.36693687 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.307118863 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.297318872 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.2946259 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.293749802 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.293718059 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007599532 seconds Ending run at 05:21:46 UTC on 2025-08-06. Run time = 3.352377814 Run time without initialization = 3.180170646 Average number of zones advanced per microsecond: 0.824 Average number of zones advanced per microsecond per rank: 0.103 TinyProfiler total time across processes [min...avg...max]: 3.3511 ... 3.3519 ... 3.3524 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1893 2.2266 2.2977 68.54% Gravity::make_radial_gravity() 21 0.2862 0.2937 0.3062 9.13% check_for_negative_density() 10 0.01777 0.09254 0.1305 3.89% Castro::initData() 1 0.03725 0.07121 0.1085 3.24% Castro::estTimeStep() 21 0.03111 0.06683 0.1045 3.12% FabArray::ParallelCopy_finish() 41 0.04241 0.05367 0.09404 2.81% amrex::Copy() 193 0.06362 0.07948 0.0867 2.59% FabArray::setVal() 143 0.05411 0.06576 0.07237 2.16% Castro::reset_internal_energy(Fab) 1008 0.04356 0.04546 0.04777 1.42% Castro::normalize_species() 62 0.04523 0.04625 0.04731 1.41% FabArray::ParallelCopy_nowait() 41 0.03664 0.04081 0.04211 1.26% FillPatchIterator::Initialize 41 0.02796 0.03237 0.03506 1.05% StateData::FillBoundary(geom) 41 0.02859 0.03086 0.03374 1.01% Gravity::interpolate_monopole_grav() 21 0.02642 0.0268 0.02718 0.81% Castro::construct_new_gravity_source() 10 0.02294 0.02467 0.0271 0.81% Castro::computeTemp() 63 0.01731 0.01784 0.01854 0.55% Castro::initialize_do_advance() 10 0.01155 0.01625 0.01772 0.53% FabArray::Saxpy() 20 0.01068 0.01248 0.01378 0.41% Castro::initialize_advance() 10 0.0053 0.01076 0.01363 0.41% MultiFab::contains_nan() 20 0.01037 0.01136 0.0127 0.38% FabArray::setDomainBndry() 41 0.007688 0.01026 0.01261 0.38% VisMF::Write(FabArray) 2 0.008777 0.009522 0.01202 0.36% Amr::writePlotFile() 2 0.007408 0.01015 0.01199 0.36% Castro::construct_old_gravity_source() 10 0.006841 0.009325 0.00982 0.29% Castro::initMFs() 1 0.00654 0.007028 0.00876 0.26% Castro::construct_new_source() 50 0.005585 0.005957 0.006366 0.19% main() 1 0.003694 0.004219 0.004643 0.14% Gravity::get_new_grav_vector() 11 0.00288 0.003423 0.003722 0.11% Gravity::get_old_grav_vector() 10 0.001619 0.00206 0.002624 0.08% Amr::coarseTimeStep() 10 0.0009214 0.001819 0.002382 0.07% Castro::finalize_do_advance() 10 0.0005879 0.001038 0.001254 0.04% AmrLevel::FillPatch() 41 0.0008225 0.001087 0.001225 0.04% Amr::timeStep() 10 0.0001265 0.0001759 0.0003798 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002725 0.0002886 0.0003038 0.01% Castro::do_advance_ctu() 10 0.0001409 0.0001682 0.0001936 0.01% Castro::clean_state() 62 0.0001495 0.000161 0.0001773 0.01% StateDataPhysBCFunct::() 41 0.0001004 0.0001151 0.0001361 0.00% Castro::do_old_sources() 10 7.957e-05 9.473e-05 0.0001129 0.00% FillPatchIterator::FillFromLevel0() 41 9.376e-05 0.000105 0.0001122 0.00% FabArray::ParallelCopy() 41 8.329e-05 9.387e-05 0.0001024 0.00% Castro::Castro() 1 4.44e-05 7.58e-05 9.399e-05 0.00% Castro::construct_old_source() 50 4.368e-05 6.618e-05 7.824e-05 0.00% Castro::do_new_sources() 10 6.152e-05 6.637e-05 7.45e-05 0.00% FillPatchSingleLevel 41 6.149e-05 6.722e-05 7.271e-05 0.00% Amr::FinalizeInit() 1 3.443e-06 1.29e-05 7.258e-05 0.00% Amr::defBaseLevel() 1 4.418e-05 5.228e-05 6.598e-05 0.00% Castro::subcycle_advance_ctu() 10 4.328e-05 4.917e-05 6.009e-05 0.00% Castro::apply_source_to_state() 20 4.316e-05 5.111e-05 5.925e-05 0.00% Castro::advance() 10 3.897e-05 4.676e-05 5.645e-05 0.00% Castro::construct_old_gravity() 10 3.402e-05 3.923e-05 4.855e-05 0.00% Castro::construct_new_gravity() 10 3.08e-05 3.454e-05 4.393e-05 0.00% Castro::expand_state() 10 2.249e-05 2.559e-05 2.97e-05 0.00% Castro::check_for_nan() 20 2.392e-05 2.544e-05 2.693e-05 0.00% Castro::post_init() 1 1.704e-05 1.874e-05 2.442e-05 0.00% Castro::post_timestep() 10 1.493e-05 1.75e-05 1.971e-05 0.00% Castro::computeNewDt() 9 8.969e-06 9.784e-06 1.069e-05 0.00% Amr::InitializeInit() 1 2.558e-06 3.465e-06 5.703e-06 0.00% Amr::init() 1 1.93e-06 2.698e-06 5.09e-06 0.00% Castro::computeInitialDt() 2 3.311e-06 3.855e-06 4.424e-06 0.00% Amr::initialInit() 1 1.397e-06 1.704e-06 2.429e-06 0.00% Other 261 0.01608 0.01844 0.02095 0.62% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.351 3.352 3.352 100.00% Amr::coarseTimeStep() 10 3.168 3.168 3.168 94.50% Amr::timeStep() 10 3.156 3.157 3.157 94.18% Castro::advance() 10 3.14 3.141 3.141 93.69% Castro::subcycle_advance_ctu() 10 3.065 3.069 3.084 92.01% Castro::do_advance_ctu() 10 3.065 3.069 3.084 92.01% Castro::construct_ctu_hydro_source() 10 2.337 2.34 2.343 69.90% Gravity::make_radial_gravity() 21 0.3026 0.3102 0.3189 9.51% AmrLevel::FillPatch() 41 0.187 0.2007 0.2236 6.67% Gravity::get_new_grav_vector() 11 0.2072 0.2084 0.2097 6.26% FillPatchIterator::Initialize 41 0.156 0.1684 0.1983 5.92% Castro::construct_old_gravity() 10 0.1777 0.1821 0.1892 5.64% Gravity::get_old_grav_vector() 10 0.177 0.1814 0.1885 5.62% Castro::construct_new_gravity() 10 0.1854 0.1863 0.1876 5.60% Amr::init() 1 0.1711 0.1717 0.1721 5.13% Castro::initialize_do_advance() 10 0.1555 0.1626 0.1712 5.11% FillPatchIterator::FillFromLevel0() 41 0.1146 0.1258 0.1614 4.82% FillPatchSingleLevel 41 0.1145 0.1257 0.1613 4.81% Amr::initialInit() 1 0.1566 0.1571 0.1576 4.70% FabArray::ParallelCopy() 41 0.08443 0.09468 0.1309 3.90% check_for_negative_density() 10 0.01777 0.09254 0.1305 3.89% Amr::InitializeInit() 1 0.05886 0.09239 0.1305 3.89% Amr::defBaseLevel() 1 0.05886 0.09238 0.1305 3.89% Castro::expand_state() 10 0.1004 0.1097 0.124 3.70% Castro::clean_state() 62 0.1128 0.1153 0.1185 3.54% Castro::initData() 1 0.04083 0.07493 0.112 3.34% Castro::estTimeStep() 21 0.03111 0.06683 0.1045 3.12% Castro::do_old_sources() 10 0.09345 0.0988 0.1018 3.04% Amr::FinalizeInit() 1 0.02614 0.06471 0.09858 2.94% FabArray::ParallelCopy_finish() 41 0.04241 0.05367 0.09404 2.81% amrex::Copy() 193 0.06362 0.07948 0.0867 2.59% Castro::computeInitialDt() 2 0.002147 0.04078 0.07464 2.23% Castro::initialize_advance() 10 0.05246 0.06817 0.07245 2.16% FabArray::setVal() 143 0.05411 0.06576 0.07237 2.16% Castro::do_new_sources() 10 0.0601 0.06386 0.0699 2.09% Castro::computeTemp() 63 0.06115 0.06358 0.0666 1.99% Castro::reset_internal_energy(MultiFab) 63 0.04384 0.04574 0.04806 1.43% Castro::reset_internal_energy(Fab) 1008 0.04356 0.04546 0.04777 1.42% Castro::normalize_species() 62 0.04523 0.04625 0.04731 1.41% FabArray::ParallelCopy_nowait() 41 0.03676 0.04091 0.0422 1.26% StateDataPhysBCFunct::() 41 0.02873 0.03097 0.03386 1.01% StateData::FillBoundary(geom) 41 0.02859 0.03086 0.03374 1.01% Castro::construct_new_source() 50 0.02881 0.03062 0.03326 0.99% Gravity::interpolate_monopole_grav() 21 0.02642 0.0268 0.02718 0.81% Castro::construct_new_gravity_source() 10 0.02294 0.02467 0.0271 0.81% Castro::post_init() 1 0.02334 0.02348 0.02365 0.71% Amr::writePlotFile() 2 0.0222 0.02231 0.02267 0.68% Castro::finalize_do_advance() 10 0.01195 0.01852 0.02237 0.67% Castro::post_timestep() 10 0.01537 0.01573 0.01618 0.48% Castro::apply_source_to_state() 20 0.01072 0.01253 0.01384 0.41% FabArray::Saxpy() 20 0.01068 0.01248 0.01378 0.41% Castro::check_for_nan() 20 0.01039 0.01138 0.01272 0.38% MultiFab::contains_nan() 20 0.01037 0.01136 0.0127 0.38% FabArray::setDomainBndry() 41 0.007688 0.01026 0.01261 0.38% VisMF::Write(FabArray) 2 0.008777 0.009522 0.01202 0.36% Castro::Castro() 1 0.01039 0.0111 0.01199 0.36% Castro::construct_old_source() 50 0.006885 0.009391 0.009891 0.30% Castro::construct_old_gravity_source() 10 0.006841 0.009325 0.00982 0.29% Castro::initMFs() 1 0.00654 0.007028 0.00876 0.26% Castro::computeNewDt() 9 0.008577 0.008589 0.008606 0.26% Other 261 0.02591 0.0295 0.03329 0.99% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 30 B 34 B 42 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 15 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8662 KiB 8669 KiB 8671 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6764 KiB 6769 KiB 6773 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7134 KiB 7139 KiB 7141 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4565 KiB 4574 KiB 4598 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 208 KiB 225 KiB 253 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 14 KiB 16 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2807 KiB 2810 KiB 2811 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 230 KiB 235 KiB 242 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 38 KiB 42 KiB 60 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2029 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 79 KiB 79 KiB 80 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 67 KiB 69 KiB 72 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.06-22-g1d307c2c661a-dirty) finalized