Initializing AMReX (25.06-22-g1d307c2c661a-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.06-22-g1d307c2c661a-dirty) initialized Starting run at 13:26:40 UTC on 2025-08-07. Successfully read inputs file ... Castro git describe: 25.08-5-g252f8b6b1 AMReX git describe: 25.06-22-g1d307c2c6-dirty Microphysics git describe: 25.08 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014636607 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.344094388 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.345434258 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.315569831 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.31571357 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.359997069 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.309167368 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.296311793 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.295603824 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.297559966 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.298951494 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.00759014 seconds Ending run at 13:26:43 UTC on 2025-08-07. Run time = 3.356660309 Run time without initialization = 3.191075617 Average number of zones advanced per microsecond: 0.821 Average number of zones advanced per microsecond per rank: 0.103 TinyProfiler total time across processes [min...avg...max]: 3.3551 ... 3.3560 ... 3.3567 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1435 2.2211 2.3097 68.81% Gravity::make_radial_gravity() 21 0.2895 0.2986 0.3179 9.47% check_for_negative_density() 10 0.01807 0.111 0.1945 5.79% Castro::initData() 1 0.03719 0.07156 0.1014 3.02% Castro::estTimeStep() 21 0.02282 0.0591 0.09699 2.89% amrex::Copy() 193 0.06113 0.07831 0.08545 2.55% FabArray::ParallelCopy_finish() 41 0.03803 0.04787 0.08376 2.50% FabArray::setVal() 143 0.05214 0.06575 0.0728 2.17% Castro::reset_internal_energy(Fab) 1008 0.04471 0.046 0.04771 1.42% Castro::normalize_species() 62 0.04473 0.04561 0.04637 1.38% FabArray::ParallelCopy_nowait() 41 0.03567 0.04129 0.04294 1.28% StateData::FillBoundary(geom) 41 0.02717 0.03085 0.03484 1.04% FillPatchIterator::Initialize 41 0.02732 0.03217 0.03476 1.04% Gravity::interpolate_monopole_grav() 21 0.02631 0.02657 0.02712 0.81% Castro::construct_new_gravity_source() 10 0.02291 0.02475 0.02685 0.80% Castro::computeTemp() 63 0.01787 0.01816 0.01862 0.55% Castro::initialize_do_advance() 10 0.01156 0.0161 0.01746 0.52% FabArray::Saxpy() 20 0.01073 0.01245 0.01367 0.41% Castro::initialize_advance() 10 0.005285 0.01071 0.01354 0.40% VisMF::Write(FabArray) 2 0.008943 0.009719 0.01311 0.39% MultiFab::contains_nan() 20 0.01065 0.0115 0.01298 0.39% FabArray::setDomainBndry() 41 0.00786 0.009972 0.01211 0.36% Amr::writePlotFile() 2 0.00752 0.009711 0.01036 0.31% Castro::construct_old_gravity_source() 10 0.006933 0.009494 0.01014 0.30% Castro::initMFs() 1 0.006385 0.006903 0.008238 0.25% Castro::enforce_min_density() 62 0.005862 0.006212 0.006731 0.20% Castro::construct_new_source() 50 0.005451 0.005949 0.006187 0.18% main() 1 0.003614 0.004025 0.00438 0.13% Gravity::get_new_grav_vector() 11 0.002775 0.00353 0.003832 0.11% Amr::coarseTimeStep() 10 0.0008861 0.002049 0.002557 0.08% Gravity::get_old_grav_vector() 10 0.001434 0.001968 0.002444 0.07% Castro::finalize_do_advance() 10 0.0006034 0.001144 0.001509 0.04% AmrLevel::FillPatch() 41 0.000768 0.001009 0.001198 0.04% Amr::timeStep() 10 0.0001379 0.0001783 0.000376 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002776 0.0002932 0.0003291 0.01% Castro::do_advance_ctu() 10 0.0001466 0.0001693 0.0001968 0.01% Castro::clean_state() 62 0.0001369 0.0001594 0.0001922 0.01% FillPatchIterator::FillFromLevel0() 41 9.637e-05 0.0001064 0.0001206 0.00% StateDataPhysBCFunct::() 41 9.94e-05 0.0001102 0.0001183 0.00% FabArray::ParallelCopy() 41 8.311e-05 9.823e-05 0.0001128 0.00% Castro::do_old_sources() 10 7.434e-05 9.007e-05 0.0001047 0.00% Castro::Castro() 1 4.691e-05 6.449e-05 8.741e-05 0.00% Castro::construct_old_source() 50 4.223e-05 6.866e-05 8.036e-05 0.00% Amr::FinalizeInit() 1 3.898e-06 1.387e-05 7.989e-05 0.00% Amr::defBaseLevel() 1 4.249e-05 5.699e-05 7.415e-05 0.00% FillPatchSingleLevel 41 6.308e-05 6.964e-05 7.415e-05 0.00% Castro::do_new_sources() 10 5.681e-05 6.079e-05 6.573e-05 0.00% Castro::construct_old_gravity() 10 3.52e-05 4.309e-05 6.098e-05 0.00% Castro::apply_source_to_state() 20 4.511e-05 5.224e-05 5.89e-05 0.00% Castro::advance() 10 3.586e-05 4.852e-05 5.884e-05 0.00% Castro::subcycle_advance_ctu() 10 4.068e-05 4.819e-05 5.223e-05 0.00% Castro::check_for_nan() 20 2.312e-05 2.921e-05 3.911e-05 0.00% Castro::construct_new_gravity() 10 2.968e-05 3.359e-05 3.861e-05 0.00% Castro::expand_state() 10 2.225e-05 2.451e-05 2.688e-05 0.00% Castro::post_init() 1 1.582e-05 1.788e-05 2.358e-05 0.00% Castro::post_timestep() 10 1.499e-05 1.705e-05 1.914e-05 0.00% Castro::computeNewDt() 9 8.685e-06 9.694e-06 1.052e-05 0.00% Amr::InitializeInit() 1 2.71e-06 3.552e-06 6.427e-06 0.00% Amr::initialInit() 1 1.478e-06 2.25e-06 4.957e-06 0.00% Castro::computeInitialDt() 2 3.381e-06 3.823e-06 4.292e-06 0.00% Amr::init() 1 1.869e-06 2.438e-06 3.013e-06 0.00% Other 199 0.009118 0.01304 0.01477 0.44% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.355 3.356 3.357 100.00% Amr::coarseTimeStep() 10 3.179 3.179 3.179 94.71% Amr::timeStep() 10 3.167 3.167 3.169 94.40% Castro::advance() 10 3.151 3.151 3.152 93.90% Castro::subcycle_advance_ctu() 10 3.075 3.08 3.096 92.23% Castro::do_advance_ctu() 10 3.075 3.08 3.096 92.23% Castro::construct_ctu_hydro_source() 10 2.349 2.353 2.359 70.27% Gravity::make_radial_gravity() 21 0.3044 0.3144 0.3304 9.84% Gravity::get_new_grav_vector() 11 0.2091 0.21 0.2112 6.29% AmrLevel::FillPatch() 41 0.1811 0.1952 0.2061 6.14% Castro::construct_old_gravity() 10 0.1787 0.1848 0.1977 5.89% Gravity::get_old_grav_vector() 10 0.1779 0.1841 0.1971 5.87% check_for_negative_density() 10 0.01807 0.111 0.1945 5.79% Castro::construct_new_gravity() 10 0.185 0.1859 0.187 5.57% FillPatchIterator::Initialize 41 0.1503 0.1626 0.183 5.45% Castro::initialize_do_advance() 10 0.1558 0.1621 0.1658 4.94% Amr::init() 1 0.1637 0.1649 0.1654 4.93% Amr::initialInit() 1 0.1494 0.1505 0.1511 4.50% FillPatchIterator::FillFromLevel0() 41 0.1126 0.1205 0.1471 4.38% FillPatchSingleLevel 41 0.1125 0.1204 0.147 4.38% Amr::InitializeInit() 1 0.0587 0.09302 0.123 3.66% Amr::defBaseLevel() 1 0.0587 0.09302 0.123 3.66% FabArray::ParallelCopy() 41 0.08118 0.08937 0.1196 3.56% Castro::clean_state() 62 0.1131 0.1156 0.119 3.55% Castro::expand_state() 10 0.1006 0.1091 0.1176 3.50% Castro::initData() 1 0.04115 0.07534 0.1055 3.14% Castro::do_old_sources() 10 0.09033 0.09385 0.09993 2.98% Castro::estTimeStep() 21 0.02282 0.0591 0.09699 2.89% Amr::FinalizeInit() 1 0.02806 0.05749 0.09236 2.75% amrex::Copy() 193 0.06113 0.07831 0.08545 2.55% FabArray::ParallelCopy_finish() 41 0.03803 0.04787 0.08376 2.50% FabArray::setVal() 143 0.05214 0.06575 0.0728 2.17% Castro::initialize_advance() 10 0.05157 0.06837 0.07279 2.17% Castro::do_new_sources() 10 0.0589 0.06405 0.07132 2.12% Castro::computeTemp() 63 0.06305 0.06446 0.06662 1.98% Castro::computeInitialDt() 2 0.002109 0.03164 0.06644 1.98% Castro::reset_internal_energy(MultiFab) 63 0.04499 0.04629 0.04799 1.43% Castro::reset_internal_energy(Fab) 1008 0.04471 0.046 0.04771 1.42% Castro::normalize_species() 62 0.04473 0.04561 0.04637 1.38% FabArray::ParallelCopy_nowait() 41 0.03579 0.0414 0.04305 1.28% StateDataPhysBCFunct::() 41 0.02728 0.03096 0.03495 1.04% StateData::FillBoundary(geom) 41 0.02717 0.03085 0.03484 1.04% Castro::construct_new_source() 50 0.02882 0.0307 0.033 0.98% Gravity::interpolate_monopole_grav() 21 0.02631 0.02657 0.02712 0.81% Castro::construct_new_gravity_source() 10 0.02291 0.02475 0.02685 0.80% Castro::finalize_do_advance() 10 0.01239 0.01992 0.02546 0.76% Castro::post_init() 1 0.02499 0.02532 0.02543 0.76% Amr::writePlotFile() 2 0.02198 0.02208 0.02249 0.67% Castro::post_timestep() 10 0.01548 0.01587 0.01657 0.49% Castro::apply_source_to_state() 20 0.01078 0.0125 0.01372 0.41% FabArray::Saxpy() 20 0.01073 0.01245 0.01367 0.41% VisMF::Write(FabArray) 2 0.008943 0.009719 0.01311 0.39% Castro::check_for_nan() 20 0.01068 0.01153 0.01301 0.39% MultiFab::contains_nan() 20 0.01065 0.0115 0.01298 0.39% FabArray::setDomainBndry() 41 0.00786 0.009972 0.01211 0.36% Castro::Castro() 1 0.01025 0.01078 0.01174 0.35% Castro::construct_old_source() 50 0.006976 0.009563 0.01022 0.30% Castro::construct_old_gravity_source() 10 0.006933 0.009494 0.01014 0.30% Castro::computeNewDt() 9 0.008681 0.0087 0.00872 0.26% Castro::initMFs() 1 0.006385 0.006903 0.008238 0.25% Castro::enforce_min_density() 62 0.005862 0.006212 0.006731 0.20% Other 199 0.01895 0.02465 0.02756 0.82% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 31 B 36 B 46 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 15 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8658 KiB 8669 KiB 8671 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6782 KiB 6785 KiB 6787 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7132 KiB 7139 KiB 7142 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4577 KiB 4584 KiB 4605 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 202 KiB 219 KiB 234 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 16 KiB 16 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2813 KiB 2816 KiB 2817 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 231 KiB 238 KiB 251 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 37 KiB 41 KiB 56 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2029 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 79 KiB 80 KiB 80 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 68 KiB 70 KiB 75 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.06-22-g1d307c2c661a-dirty) finalized