Initializing AMReX (25.06-22-g1d307c2c661a-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.06-22-g1d307c2c661a-dirty) initialized Starting run at 05:17:40 UTC on 2025-08-07. Successfully read inputs file ... Castro git describe: 25.08-3-g5d2ee91fb AMReX git describe: 25.06-22-g1d307c2c6-dirty Microphysics git describe: 25.08 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014478485 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.345356928 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.333745816 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.31466026 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.314527823 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.362190607 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.30918099 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.297963115 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.295645236 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.297873753 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.296389796 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.008157809 seconds Ending run at 05:17:44 UTC on 2025-08-07. Run time = 3.34727409 Run time without initialization = 3.180763457 Average number of zones advanced per microsecond: 0.824 Average number of zones advanced per microsecond per rank: 0.103 TinyProfiler total time across processes [min...avg...max]: 3.3455 ... 3.3463 ... 3.3473 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1896 2.2365 2.2792 68.09% Gravity::make_radial_gravity() 21 0.2894 0.2966 0.3068 9.16% check_for_negative_density() 10 0.03778 0.08214 0.1336 3.99% Castro::initData() 1 0.03901 0.07177 0.1018 3.04% amrex::Copy() 193 0.06599 0.07924 0.08831 2.64% Castro::estTimeStep() 21 0.03015 0.05782 0.08635 2.58% FabArray::ParallelCopy_finish() 41 0.03577 0.04848 0.08289 2.48% FabArray::setVal() 143 0.05503 0.06645 0.07222 2.16% Castro::normalize_species() 62 0.04511 0.04736 0.05551 1.66% Castro::reset_internal_energy(Fab) 1008 0.04535 0.0463 0.04705 1.41% FabArray::ParallelCopy_nowait() 41 0.03502 0.04077 0.04261 1.27% FillPatchIterator::Initialize 41 0.02649 0.03198 0.03443 1.03% StateData::FillBoundary(geom) 41 0.02821 0.03101 0.03406 1.02% Gravity::interpolate_monopole_grav() 21 0.02635 0.02679 0.02708 0.81% Castro::construct_new_gravity_source() 10 0.02355 0.02462 0.02669 0.80% Castro::computeTemp() 63 0.01794 0.01826 0.01866 0.56% Castro::initialize_do_advance() 10 0.01183 0.01621 0.01744 0.52% FabArray::Saxpy() 20 0.01085 0.01251 0.01358 0.41% Castro::initialize_advance() 10 0.005314 0.01068 0.01344 0.40% Amr::writePlotFile() 2 0.007631 0.01058 0.0132 0.39% MultiFab::contains_nan() 20 0.01064 0.01151 0.0126 0.38% FabArray::setDomainBndry() 41 0.006568 0.01002 0.01259 0.38% VisMF::Write(FabArray) 2 0.008472 0.009714 0.01257 0.38% Castro::construct_old_gravity_source() 10 0.006767 0.009477 0.01016 0.30% Castro::initMFs() 1 0.006525 0.007155 0.007929 0.24% Castro::enforce_min_density() 62 0.00579 0.006195 0.006656 0.20% Castro::construct_new_source() 50 0.005817 0.006092 0.006422 0.19% main() 1 0.003814 0.004118 0.004453 0.13% Amr::coarseTimeStep() 10 0.001783 0.003114 0.004067 0.12% Gravity::get_new_grav_vector() 11 0.003078 0.003495 0.003731 0.11% Gravity::get_old_grav_vector() 10 0.001708 0.002067 0.002605 0.08% Castro::finalize_do_advance() 10 0.0005015 0.001202 0.00182 0.05% AmrLevel::FillPatch() 41 0.0007517 0.001167 0.001273 0.04% Amr::timeStep() 10 0.0001417 0.0001909 0.000441 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002705 0.0002882 0.0003048 0.01% Castro::do_advance_ctu() 10 0.0001651 0.0001831 0.0002064 0.01% Castro::clean_state() 62 0.0001567 0.000174 0.0002016 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001028 0.0001128 0.0001338 0.00% StateDataPhysBCFunct::() 41 0.0001081 0.0001162 0.0001329 0.00% FabArray::ParallelCopy() 41 9.361e-05 9.936e-05 0.0001049 0.00% Castro::do_old_sources() 10 8.642e-05 9.486e-05 0.0001037 0.00% Amr::FinalizeInit() 1 3.263e-06 1.496e-05 9.016e-05 0.00% Castro::Castro() 1 4.734e-05 6.784e-05 8.704e-05 0.00% FillPatchSingleLevel 41 6.808e-05 7.312e-05 8.148e-05 0.00% Castro::construct_old_source() 50 5.884e-05 7.008e-05 8.088e-05 0.00% Castro::do_new_sources() 10 6e-05 6.641e-05 7.361e-05 0.00% Castro::apply_source_to_state() 20 4.888e-05 5.431e-05 6.522e-05 0.00% Amr::defBaseLevel() 1 4.54e-05 5.006e-05 6.335e-05 0.00% Castro::advance() 10 4.557e-05 5.146e-05 5.91e-05 0.00% Castro::subcycle_advance_ctu() 10 4.343e-05 4.86e-05 5.244e-05 0.00% Castro::construct_old_gravity() 10 3.864e-05 4.34e-05 4.963e-05 0.00% Castro::construct_new_gravity() 10 3.337e-05 3.789e-05 4.264e-05 0.00% Castro::expand_state() 10 2.062e-05 2.559e-05 3.002e-05 0.00% Castro::post_init() 1 1.569e-05 2.058e-05 2.972e-05 0.00% Castro::check_for_nan() 20 2.424e-05 2.657e-05 2.798e-05 0.00% Castro::post_timestep() 10 1.644e-05 1.925e-05 2.489e-05 0.00% Castro::computeNewDt() 9 9.411e-06 1.042e-05 1.174e-05 0.00% Amr::InitializeInit() 1 2.49e-06 3.482e-06 5.61e-06 0.00% Castro::computeInitialDt() 2 3.141e-06 3.501e-06 4.337e-06 0.00% Amr::init() 1 1.935e-06 2.429e-06 3.419e-06 0.00% Amr::initialInit() 1 1.278e-06 1.916e-06 3.046e-06 0.00% Other 199 0.01024 0.01293 0.01526 0.46% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.345 3.346 3.347 100.00% Amr::coarseTimeStep() 10 3.168 3.168 3.168 94.65% Amr::timeStep() 10 3.155 3.156 3.157 94.31% Castro::advance() 10 3.138 3.139 3.14 93.80% Castro::subcycle_advance_ctu() 10 3.063 3.067 3.079 91.98% Castro::do_advance_ctu() 10 3.063 3.067 3.079 91.98% Castro::construct_ctu_hydro_source() 10 2.336 2.34 2.347 70.10% Gravity::make_radial_gravity() 21 0.3061 0.3135 0.3221 9.62% Gravity::get_new_grav_vector() 11 0.2089 0.2116 0.2132 6.37% AmrLevel::FillPatch() 41 0.1819 0.1952 0.2053 6.13% Castro::construct_old_gravity() 10 0.178 0.1828 0.1914 5.72% Gravity::get_old_grav_vector() 10 0.1773 0.1822 0.1908 5.70% Castro::construct_new_gravity() 10 0.1857 0.188 0.1891 5.65% FillPatchIterator::Initialize 41 0.1514 0.1628 0.1803 5.39% Castro::initialize_do_advance() 10 0.1585 0.1632 0.1663 4.97% Amr::init() 1 0.1647 0.1654 0.1662 4.96% Amr::initialInit() 1 0.1501 0.1508 0.1515 4.52% FillPatchIterator::FillFromLevel0() 41 0.1128 0.1208 0.1472 4.40% FillPatchSingleLevel 41 0.1127 0.1207 0.1471 4.39% check_for_negative_density() 10 0.03778 0.08214 0.1336 3.99% Castro::clean_state() 62 0.1145 0.1177 0.1247 3.73% Amr::InitializeInit() 1 0.06079 0.09345 0.1236 3.69% Amr::defBaseLevel() 1 0.06078 0.09345 0.1236 3.69% Castro::expand_state() 10 0.1039 0.1099 0.1186 3.54% FabArray::ParallelCopy() 41 0.07838 0.08946 0.1181 3.53% Castro::initData() 1 0.04279 0.07565 0.1059 3.16% Castro::do_old_sources() 10 0.08909 0.09343 0.0972 2.90% Amr::FinalizeInit() 1 0.02765 0.05734 0.09055 2.71% amrex::Copy() 193 0.06599 0.07924 0.08831 2.64% Castro::estTimeStep() 21 0.03015 0.05782 0.08635 2.58% FabArray::ParallelCopy_finish() 41 0.03577 0.04848 0.08289 2.48% Castro::initialize_advance() 10 0.05619 0.06897 0.073 2.18% FabArray::setVal() 143 0.05503 0.06645 0.07222 2.16% Castro::do_new_sources() 10 0.06104 0.06461 0.07076 2.11% Castro::computeTemp() 63 0.06388 0.06485 0.06561 1.96% Castro::computeInitialDt() 2 0.00217 0.03204 0.06523 1.95% Castro::normalize_species() 62 0.04511 0.04736 0.05551 1.66% Castro::reset_internal_energy(MultiFab) 63 0.04565 0.04659 0.04733 1.41% Castro::reset_internal_energy(Fab) 1008 0.04535 0.0463 0.04705 1.41% FabArray::ParallelCopy_nowait() 41 0.03515 0.04088 0.0427 1.28% StateDataPhysBCFunct::() 41 0.02832 0.03113 0.03419 1.02% StateData::FillBoundary(geom) 41 0.02821 0.03101 0.03406 1.02% Castro::construct_new_source() 50 0.02937 0.03071 0.03311 0.99% Gravity::interpolate_monopole_grav() 21 0.02635 0.02679 0.02708 0.81% Castro::construct_new_gravity_source() 10 0.02355 0.02462 0.02669 0.80% Castro::post_init() 1 0.02447 0.02478 0.02499 0.75% Amr::writePlotFile() 2 0.0227 0.02289 0.02337 0.70% Castro::finalize_do_advance() 10 0.01207 0.01849 0.0226 0.68% Castro::post_timestep() 10 0.01554 0.01626 0.01824 0.54% Castro::apply_source_to_state() 20 0.0109 0.01256 0.01364 0.41% FabArray::Saxpy() 20 0.01085 0.01251 0.01358 0.41% Castro::check_for_nan() 20 0.01067 0.01154 0.01263 0.38% MultiFab::contains_nan() 20 0.01064 0.01151 0.0126 0.38% FabArray::setDomainBndry() 41 0.006568 0.01002 0.01259 0.38% VisMF::Write(FabArray) 2 0.008472 0.009714 0.01257 0.38% Castro::Castro() 1 0.009595 0.011 0.01191 0.36% Castro::construct_old_source() 50 0.006826 0.009547 0.01024 0.31% Castro::construct_old_gravity_source() 10 0.006767 0.009477 0.01016 0.30% Castro::computeNewDt() 9 0.008483 0.0085 0.008514 0.25% Castro::initMFs() 1 0.006525 0.007155 0.007929 0.24% Castro::enforce_min_density() 62 0.00579 0.006195 0.006656 0.20% Other 199 0.02014 0.02451 0.02867 0.86% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 32 B 37 B 44 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 15 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8658 KiB 8668 KiB 8671 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6774 KiB 6782 KiB 6785 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7130 KiB 7140 KiB 7142 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4570 KiB 4578 KiB 4597 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 205 KiB 220 KiB 235 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 14 KiB 16 KiB 21 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2810 KiB 2813 KiB 2814 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 233 KiB 238 KiB 245 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 36 KiB 41 KiB 56 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2026 KiB 2029 KiB 2029 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 80 KiB 81 KiB 81 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 68 KiB 69 KiB 73 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.06-22-g1d307c2c661a-dirty) finalized