Initializing AMReX (25.06-22-g1d307c2c661a-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.06-22-g1d307c2c661a-dirty) initialized Starting run at 11:54:42 UTC on 2025-08-08. Successfully read inputs file ... Castro git describe: 25.08-9-g65a387699 AMReX git describe: 25.06-22-g1d307c2c6-dirty Microphysics git describe: 25.08 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015017552 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.348484144 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.34576482 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.312965729 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.314455577 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.383032252 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.307525867 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.298362363 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.299123466 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.299125568 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.299301144 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007664912 seconds Ending run at 11:54:45 UTC on 2025-08-08. Run time = 3.39621352 Run time without initialization = 3.220609454 Average number of zones advanced per microsecond: 0.814 Average number of zones advanced per microsecond per rank: 0.102 TinyProfiler total time across processes [min...avg...max]: 3.3949 ... 3.3956 ... 3.3965 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1663 2.2420 2.3242 68.43% Gravity::make_radial_gravity() 21 0.2971 0.3047 0.3193 9.40% check_for_negative_density() 10 0.01761 0.1033 0.1804 5.31% Castro::initData() 1 0.03694 0.07236 0.1084 3.19% Castro::estTimeStep() 21 0.03078 0.06512 0.1038 3.06% FabArray::ParallelCopy_finish() 41 0.04341 0.05931 0.09745 2.87% amrex::Copy() 193 0.06276 0.07832 0.0861 2.53% FabArray::setVal() 143 0.05348 0.06541 0.07 2.06% Castro::reset_internal_energy(Fab) 1008 0.04245 0.04588 0.04839 1.42% Castro::normalize_species() 62 0.04554 0.04627 0.04779 1.41% FabArray::ParallelCopy_nowait() 41 0.03547 0.04055 0.04323 1.27% FillPatchIterator::Initialize 41 0.02794 0.03253 0.0348 1.02% StateData::FillBoundary(geom) 41 0.02858 0.03076 0.03227 0.95% Gravity::interpolate_monopole_grav() 21 0.02681 0.02714 0.02774 0.82% Castro::construct_new_gravity_source() 10 0.02296 0.02455 0.02653 0.78% Castro::construct_old_gravity_source() 10 0.006743 0.01108 0.02038 0.60% Castro::computeTemp() 63 0.01713 0.0182 0.01878 0.55% Castro::initialize_do_advance() 10 0.01191 0.01611 0.01808 0.53% FabArray::Saxpy() 20 0.01071 0.01332 0.01759 0.52% Castro::initialize_advance() 10 0.005346 0.0108 0.01369 0.40% VisMF::Write(FabArray) 2 0.009017 0.009793 0.0128 0.38% MultiFab::contains_nan() 20 0.01042 0.01154 0.01267 0.37% Amr::writePlotFile() 2 0.00747 0.01059 0.0125 0.37% FabArray::setDomainBndry() 41 0.008128 0.009193 0.01004 0.30% Castro::initMFs() 1 0.00646 0.007003 0.00846 0.25% Castro::construct_new_source() 50 0.005632 0.006022 0.006322 0.19% main() 1 0.00391 0.004057 0.004246 0.13% Gravity::get_new_grav_vector() 11 0.002849 0.0035 0.003907 0.12% Amr::coarseTimeStep() 10 0.0008444 0.001667 0.002418 0.07% Gravity::get_old_grav_vector() 10 0.001679 0.001985 0.002263 0.07% Castro::finalize_do_advance() 10 0.0005814 0.001143 0.001364 0.04% AmrLevel::FillPatch() 41 0.0008058 0.0009237 0.001067 0.03% Amr::timeStep() 10 0.0001321 0.0001865 0.0004418 0.01% Castro::reset_internal_energy(MultiFab) 63 0.000277 0.0003006 0.0003181 0.01% Castro::do_advance_ctu() 10 0.0001622 0.0001868 0.000238 0.01% Castro::clean_state() 62 0.0001403 0.0001657 0.0001821 0.01% Castro::construct_old_source() 50 5.606e-05 8.081e-05 0.0001355 0.00% FillPatchIterator::FillFromLevel0() 41 0.000103 0.0001121 0.0001255 0.00% Castro::do_old_sources() 10 6.968e-05 9.411e-05 0.000123 0.00% FabArray::ParallelCopy() 41 9.476e-05 0.0001029 0.0001211 0.00% StateDataPhysBCFunct::() 41 9.035e-05 0.0001086 0.0001198 0.00% Amr::FinalizeInit() 1 3.596e-06 1.576e-05 9.723e-05 0.00% Castro::Castro() 1 4.558e-05 6.799e-05 9.54e-05 0.00% Castro::apply_source_to_state() 20 4.98e-05 5.805e-05 8.37e-05 0.00% FillPatchSingleLevel 41 6.474e-05 6.949e-05 7.68e-05 0.00% Castro::do_new_sources() 10 5.198e-05 5.996e-05 6.617e-05 0.00% Castro::advance() 10 4.097e-05 4.699e-05 6.371e-05 0.00% Castro::subcycle_advance_ctu() 10 4.603e-05 5.006e-05 6.182e-05 0.00% Castro::construct_new_gravity() 10 2.888e-05 3.834e-05 5.465e-05 0.00% Amr::defBaseLevel() 1 4.188e-05 4.641e-05 5.281e-05 0.00% Castro::construct_old_gravity() 10 3.515e-05 4.203e-05 4.88e-05 0.00% Castro::expand_state() 10 2.253e-05 2.674e-05 3.33e-05 0.00% Castro::check_for_nan() 20 2.343e-05 2.586e-05 3.075e-05 0.00% Castro::post_init() 1 1.605e-05 1.909e-05 2.387e-05 0.00% Castro::post_timestep() 10 1.534e-05 1.735e-05 1.991e-05 0.00% Castro::computeNewDt() 9 8.388e-06 9.732e-06 1.061e-05 0.00% Amr::InitializeInit() 1 2.552e-06 3.278e-06 6.187e-06 0.00% Amr::initialInit() 1 1.731e-06 2.335e-06 4.685e-06 0.00% Castro::computeInitialDt() 2 2.795e-06 3.508e-06 4.299e-06 0.00% Amr::init() 1 1.956e-06 2.41e-06 2.985e-06 0.00% Other 261 0.01587 0.01847 0.02114 0.62% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.395 3.396 3.396 100.00% Amr::coarseTimeStep() 10 3.209 3.209 3.209 94.47% Amr::timeStep() 10 3.197 3.197 3.198 94.16% Castro::advance() 10 3.181 3.181 3.182 93.68% Castro::subcycle_advance_ctu() 10 3.106 3.11 3.124 91.97% Castro::do_advance_ctu() 10 3.106 3.11 3.124 91.97% Castro::construct_ctu_hydro_source() 10 2.363 2.367 2.37 69.78% Gravity::make_radial_gravity() 21 0.3134 0.3203 0.332 9.78% AmrLevel::FillPatch() 41 0.1863 0.2044 0.2231 6.57% Gravity::get_new_grav_vector() 11 0.2107 0.212 0.214 6.30% Castro::construct_old_gravity() 10 0.1859 0.1901 0.2002 5.89% Gravity::get_old_grav_vector() 10 0.1852 0.1895 0.1995 5.87% FillPatchIterator::Initialize 41 0.1539 0.1729 0.1984 5.84% Castro::construct_new_gravity() 10 0.186 0.1868 0.1882 5.54% check_for_negative_density() 10 0.01761 0.1033 0.1804 5.31% Amr::init() 1 0.1741 0.1747 0.1754 5.17% Castro::initialize_do_advance() 10 0.1569 0.1609 0.1647 4.85% FillPatchIterator::FillFromLevel0() 41 0.1138 0.1311 0.162 4.77% FillPatchSingleLevel 41 0.1136 0.131 0.1619 4.77% Amr::initialInit() 1 0.1586 0.1596 0.1603 4.72% FabArray::ParallelCopy() 41 0.08442 0.1001 0.1332 3.92% Amr::InitializeInit() 1 0.05819 0.09351 0.1299 3.82% Amr::defBaseLevel() 1 0.05818 0.09351 0.1299 3.82% Castro::clean_state() 62 0.1112 0.1159 0.1207 3.55% Castro::expand_state() 10 0.1028 0.1079 0.1166 3.43% Castro::initData() 1 0.04079 0.07621 0.1119 3.29% Castro::do_old_sources() 10 0.1006 0.1061 0.1095 3.23% Castro::estTimeStep() 21 0.03078 0.06512 0.1038 3.06% Amr::FinalizeInit() 1 0.02873 0.06607 0.102 3.00% FabArray::ParallelCopy_finish() 41 0.04341 0.05931 0.09745 2.87% amrex::Copy() 193 0.06276 0.07832 0.0861 2.53% Castro::computeInitialDt() 2 0.002217 0.03924 0.07501 2.21% Castro::initialize_advance() 10 0.05375 0.06829 0.07269 2.14% FabArray::setVal() 143 0.05348 0.06541 0.07 2.06% Castro::do_new_sources() 10 0.06069 0.06375 0.06931 2.04% Castro::computeTemp() 63 0.05989 0.06438 0.06749 1.99% Castro::reset_internal_energy(MultiFab) 63 0.04276 0.04618 0.0487 1.43% Castro::reset_internal_energy(Fab) 1008 0.04245 0.04588 0.04839 1.42% Castro::normalize_species() 62 0.04554 0.04627 0.04779 1.41% FabArray::ParallelCopy_nowait() 41 0.0356 0.04066 0.04333 1.28% Castro::construct_new_source() 50 0.02882 0.03058 0.0327 0.96% StateDataPhysBCFunct::() 41 0.02869 0.03087 0.03236 0.95% StateData::FillBoundary(geom) 41 0.02858 0.03076 0.03227 0.95% Gravity::interpolate_monopole_grav() 21 0.02681 0.02714 0.02774 0.82% Castro::post_init() 1 0.02625 0.0264 0.02657 0.78% Castro::construct_new_gravity_source() 10 0.02296 0.02455 0.02653 0.78% Amr::writePlotFile() 2 0.0227 0.02292 0.02325 0.68% Castro::finalize_do_advance() 10 0.01206 0.01847 0.02265 0.67% Castro::construct_old_source() 50 0.006799 0.01116 0.02051 0.60% Castro::construct_old_gravity_source() 10 0.006743 0.01108 0.02038 0.60% Castro::apply_source_to_state() 20 0.01076 0.01338 0.01767 0.52% FabArray::Saxpy() 20 0.01071 0.01332 0.01759 0.52% Castro::post_timestep() 10 0.01494 0.01587 0.01633 0.48% VisMF::Write(FabArray) 2 0.009017 0.009793 0.0128 0.38% Castro::check_for_nan() 20 0.01045 0.01157 0.01269 0.37% MultiFab::contains_nan() 20 0.01042 0.01154 0.01267 0.37% Castro::Castro() 1 0.01032 0.01088 0.01178 0.35% FabArray::setDomainBndry() 41 0.008128 0.009193 0.01004 0.30% Castro::computeNewDt() 9 0.008551 0.008568 0.008582 0.25% Castro::initMFs() 1 0.00646 0.007003 0.00846 0.25% Other 261 0.02585 0.02971 0.03394 1.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 30 B 35 B 46 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 15 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8661 KiB 8671 KiB 8674 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6761 KiB 6769 KiB 6774 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7132 KiB 7141 KiB 7143 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4570 KiB 4575 KiB 4598 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 205 KiB 224 KiB 245 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 14 KiB 16 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2806 KiB 2810 KiB 2811 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 235 KiB 240 KiB 249 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 37 KiB 43 KiB 58 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 79 KiB 80 KiB 80 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 70 KiB 71 KiB 75 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.06-22-g1d307c2c661a-dirty) finalized