Initializing AMReX (25.06-22-g1d307c2c661a-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.06-22-g1d307c2c661a-dirty) initialized Starting run at 00:23:47 UTC on 2025-08-09. Successfully read inputs file ... Castro git describe: 25.08-11-ga6c75bd89 AMReX git describe: 25.06-22-g1d307c2c6-dirty Microphysics git describe: 25.08-2-g5b437699 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014893057 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.342070543 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.336747595 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.323980883 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.320939072 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.371472595 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.307629828 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.299886709 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.299828517 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.300329722 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.300181732 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007937311 seconds Ending run at 00:23:51 UTC on 2025-08-09. Run time = 3.384589884 Run time without initialization = 3.216045977 Average number of zones advanced per microsecond: 0.815 Average number of zones advanced per microsecond per rank: 0.102 TinyProfiler total time across processes [min...avg...max]: 3.3837 ... 3.3843 ... 3.3855 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2182 2.2569 2.2927 67.72% Gravity::make_radial_gravity() 21 0.287 0.2932 0.3062 9.04% check_for_negative_density() 10 0.04706 0.08098 0.1238 3.66% Castro::initData() 1 0.03734 0.07085 0.1036 3.06% Castro::estTimeStep() 21 0.02153 0.05906 0.09609 2.84% amrex::Copy() 193 0.07441 0.08322 0.09219 2.72% FabArray::setVal() 143 0.06714 0.07048 0.07473 2.21% FabArray::ParallelCopy_finish() 41 0.04626 0.05563 0.06615 1.95% Castro::reset_internal_energy(Fab) 1008 0.04508 0.04619 0.04702 1.39% Castro::normalize_species() 62 0.04508 0.04575 0.04654 1.37% FabArray::ParallelCopy_nowait() 41 0.04019 0.04246 0.04446 1.31% FillPatchIterator::Initialize 41 0.02906 0.03464 0.03749 1.11% StateData::FillBoundary(geom) 41 0.02804 0.03147 0.03405 1.01% Gravity::interpolate_monopole_grav() 21 0.02644 0.02692 0.0273 0.81% Castro::construct_new_gravity_source() 10 0.0241 0.02517 0.02677 0.79% Castro::computeTemp() 63 0.01789 0.01829 0.01848 0.55% Castro::initialize_do_advance() 10 0.01328 0.01697 0.01839 0.54% Castro::initialize_advance() 10 0.01056 0.01255 0.01495 0.44% FabArray::Saxpy() 20 0.012 0.01331 0.01425 0.42% FabArray::setDomainBndry() 41 0.006959 0.01057 0.01302 0.38% VisMF::Write(FabArray) 2 0.009361 0.009944 0.01241 0.37% MultiFab::contains_nan() 20 0.01071 0.01163 0.01221 0.36% Amr::writePlotFile() 2 0.007718 0.01012 0.01078 0.32% Castro::construct_old_gravity_source() 10 0.008367 0.01007 0.01069 0.32% Castro::initMFs() 1 0.006441 0.007079 0.008433 0.25% Castro::construct_new_source() 50 0.006125 0.006316 0.006499 0.19% main() 1 0.003948 0.004221 0.004546 0.13% Gravity::get_new_grav_vector() 11 0.003123 0.003781 0.004085 0.12% Gravity::get_old_grav_vector() 10 0.001673 0.002154 0.002672 0.08% Amr::coarseTimeStep() 10 0.0009607 0.001191 0.001599 0.05% Castro::finalize_do_advance() 10 0.0006828 0.001147 0.001487 0.04% AmrLevel::FillPatch() 41 0.0009483 0.001068 0.001204 0.04% Amr::timeStep() 10 0.0001331 0.0001893 0.0004426 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002706 0.0003004 0.0003281 0.01% Castro::do_advance_ctu() 10 0.0001517 0.000172 0.0002048 0.01% Castro::clean_state() 62 0.0001432 0.0001583 0.0001758 0.01% StateDataPhysBCFunct::() 41 0.0001068 0.0001277 0.0001452 0.00% Amr::FinalizeInit() 1 3.873e-06 2.068e-05 0.0001301 0.00% Castro::do_old_sources() 10 8.089e-05 9.979e-05 0.000125 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001036 0.0001165 0.0001249 0.00% FabArray::ParallelCopy() 41 9.269e-05 0.0001032 0.0001241 0.00% Castro::construct_old_source() 50 5.514e-05 7.175e-05 9.498e-05 0.00% Castro::Castro() 1 5.175e-05 6.654e-05 8.301e-05 0.00% FillPatchSingleLevel 41 6.856e-05 7.758e-05 8.192e-05 0.00% Castro::apply_source_to_state() 20 4.905e-05 5.743e-05 7.626e-05 0.00% Castro::do_new_sources() 10 5.373e-05 6.375e-05 7.275e-05 0.00% Castro::subcycle_advance_ctu() 10 4.306e-05 5.146e-05 6.918e-05 0.00% Castro::construct_new_gravity() 10 2.966e-05 3.745e-05 5.749e-05 0.00% Castro::advance() 10 3.751e-05 4.5e-05 4.998e-05 0.00% Amr::defBaseLevel() 1 4.136e-05 4.484e-05 4.972e-05 0.00% Castro::construct_old_gravity() 10 3.586e-05 4.076e-05 4.541e-05 0.00% Castro::expand_state() 10 2.287e-05 2.587e-05 3.124e-05 0.00% Castro::check_for_nan() 20 2.215e-05 2.5e-05 2.937e-05 0.00% Castro::post_init() 1 1.479e-05 1.831e-05 2.252e-05 0.00% Castro::post_timestep() 10 1.43e-05 1.652e-05 1.911e-05 0.00% AmrLevel::AmrLevel(dm) 1 9.927e-06 1.124e-05 1.242e-05 0.00% Castro::computeNewDt() 9 8.613e-06 9.215e-06 9.918e-06 0.00% Amr::InitializeInit() 1 2.563e-06 3.376e-06 5.904e-06 0.00% Amr::initialInit() 1 1.526e-06 2.428e-06 4.893e-06 0.00% Castro::computeInitialDt() 2 3.228e-06 3.63e-06 4.18e-06 0.00% Amr::init() 1 1.8e-06 2.519e-06 3.246e-06 0.00% Other 260 0.01625 0.01896 0.02141 0.63% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.384 3.384 3.386 100.00% Amr::coarseTimeStep() 10 3.204 3.204 3.204 94.63% Amr::timeStep() 10 3.193 3.193 3.193 94.32% Castro::advance() 10 3.177 3.177 3.178 93.86% Castro::subcycle_advance_ctu() 10 3.098 3.101 3.104 91.69% Castro::do_advance_ctu() 10 3.098 3.101 3.104 91.69% Castro::construct_ctu_hydro_source() 10 2.35 2.359 2.364 69.83% Gravity::make_radial_gravity() 21 0.3037 0.3099 0.3207 9.47% AmrLevel::FillPatch() 41 0.197 0.2087 0.2187 6.46% Gravity::get_new_grav_vector() 11 0.2077 0.2087 0.2095 6.19% Castro::construct_old_gravity() 10 0.1783 0.1846 0.1946 5.75% Gravity::get_old_grav_vector() 10 0.1776 0.1839 0.1939 5.73% Castro::construct_new_gravity() 10 0.1848 0.1852 0.1858 5.49% FillPatchIterator::Initialize 41 0.1673 0.1753 0.1829 5.40% Castro::initialize_do_advance() 10 0.1549 0.1658 0.1725 5.09% Amr::init() 1 0.1676 0.1681 0.1689 4.99% Amr::initialInit() 1 0.1526 0.1531 0.154 4.55% FillPatchIterator::FillFromLevel0() 41 0.1206 0.1301 0.1363 4.03% FillPatchSingleLevel 41 0.1204 0.13 0.1362 4.02% Amr::InitializeInit() 1 0.05785 0.09194 0.1252 3.70% Amr::defBaseLevel() 1 0.05785 0.09194 0.1252 3.70% check_for_negative_density() 10 0.04706 0.08098 0.1238 3.66% Castro::expand_state() 10 0.1046 0.1113 0.1177 3.48% Castro::clean_state() 62 0.1138 0.1158 0.1173 3.46% Castro::do_old_sources() 10 0.09612 0.1058 0.1136 3.36% Castro::initData() 1 0.04126 0.0746 0.1071 3.16% FabArray::ParallelCopy() 41 0.08904 0.09829 0.1066 3.15% Castro::estTimeStep() 21 0.02153 0.05906 0.09609 2.84% Amr::FinalizeInit() 1 0.02738 0.06118 0.09537 2.82% amrex::Copy() 193 0.07441 0.08322 0.09219 2.72% Castro::initialize_advance() 10 0.06949 0.0733 0.07618 2.25% FabArray::setVal() 143 0.06714 0.07048 0.07473 2.21% Castro::do_new_sources() 10 0.06285 0.06628 0.07036 2.08% Castro::computeInitialDt() 2 0.002142 0.03588 0.07 2.07% FabArray::ParallelCopy_finish() 41 0.04626 0.05563 0.06615 1.95% Castro::computeTemp() 63 0.06346 0.06477 0.06557 1.94% Castro::reset_internal_energy(MultiFab) 63 0.04539 0.04649 0.04732 1.40% Castro::reset_internal_energy(Fab) 1008 0.04508 0.04619 0.04702 1.39% Castro::normalize_species() 62 0.04508 0.04575 0.04654 1.37% FabArray::ParallelCopy_nowait() 41 0.04029 0.04257 0.04458 1.32% StateDataPhysBCFunct::() 41 0.02815 0.0316 0.03418 1.01% StateData::FillBoundary(geom) 41 0.02804 0.03147 0.03405 1.01% Castro::construct_new_source() 50 0.03032 0.03148 0.03323 0.98% Gravity::interpolate_monopole_grav() 21 0.02644 0.02692 0.0273 0.81% Castro::construct_new_gravity_source() 10 0.0241 0.02517 0.02677 0.79% Castro::post_init() 1 0.02457 0.02477 0.02491 0.74% Amr::writePlotFile() 2 0.02296 0.02303 0.0231 0.68% Castro::finalize_do_advance() 10 0.01232 0.01599 0.01979 0.58% Castro::post_timestep() 10 0.01528 0.01568 0.01595 0.47% Castro::apply_source_to_state() 20 0.01205 0.01337 0.01432 0.42% FabArray::Saxpy() 20 0.012 0.01331 0.01425 0.42% FabArray::setDomainBndry() 41 0.006959 0.01057 0.01302 0.38% VisMF::Write(FabArray) 2 0.009361 0.009944 0.01241 0.37% Castro::check_for_nan() 20 0.01074 0.01166 0.01224 0.36% MultiFab::contains_nan() 20 0.01071 0.01163 0.01221 0.36% Castro::Castro() 1 0.01008 0.01087 0.01176 0.35% Castro::construct_old_source() 50 0.008422 0.01014 0.01078 0.32% Castro::construct_old_gravity_source() 10 0.008367 0.01007 0.01069 0.32% Castro::initMFs() 1 0.006441 0.007079 0.008433 0.25% Castro::computeNewDt() 9 0.008342 0.008359 0.008377 0.25% AmrLevel::AmrLevel(dm) 1 0.005411 0.005826 0.006535 0.19% Other 260 0.02074 0.0244 0.02786 0.82% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 35 B 39 B 59 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8660 KiB 8670 KiB 8673 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6772 KiB 6780 KiB 6782 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7130 KiB 7140 KiB 7142 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4572 KiB 4577 KiB 4579 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 217 KiB 230 KiB 241 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 16 KiB 17 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2811 KiB 2815 KiB 2816 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 228 KiB 233 KiB 241 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 39 KiB 43 KiB 47 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 78 KiB 79 KiB 79 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 67 KiB 69 KiB 73 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.06-22-g1d307c2c661a-dirty) finalized