Initializing AMReX (25.06-22-g1d307c2c661a-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.06-22-g1d307c2c661a-dirty) initialized Starting run at 05:18:19 UTC on 2025-08-08. Successfully read inputs file ... Castro git describe: 25.08-6-g044cccc0b AMReX git describe: 25.06-22-g1d307c2c6-dirty Microphysics git describe: 25.08 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014450674 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.34058814 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.342647127 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.313496181 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.313848877 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.356681672 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.306366272 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.29744996 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.297512235 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.297542398 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.298160766 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007369713 seconds Ending run at 05:18:23 UTC on 2025-08-08. Run time = 3.363603348 Run time without initialization = 3.176289835 Average number of zones advanced per microsecond: 0.825 Average number of zones advanced per microsecond per rank: 0.103 TinyProfiler total time across processes [min...avg...max]: 3.3591 ... 3.3626 ... 3.3637 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1783 2.2170 2.2794 67.76% Gravity::make_radial_gravity() 21 0.2896 0.3 0.3157 9.38% check_for_negative_density() 10 0.02009 0.08705 0.1274 3.79% Castro::initData() 1 0.03888 0.07293 0.1205 3.58% Castro::estTimeStep() 21 0.03053 0.07636 0.1132 3.36% FabArray::ParallelCopy_finish() 41 0.03548 0.05409 0.09596 2.85% amrex::Copy() 193 0.0647 0.07901 0.08871 2.64% FabArray::setVal() 143 0.05266 0.0645 0.0696 2.07% Castro::normalize_species() 62 0.04576 0.04823 0.05363 1.59% Castro::reset_internal_energy(Fab) 1008 0.04241 0.04644 0.0518 1.54% FabArray::ParallelCopy_nowait() 41 0.03558 0.04173 0.04545 1.35% FillPatchIterator::Initialize 41 0.02765 0.03326 0.03741 1.11% StateData::FillBoundary(geom) 41 0.02922 0.03087 0.0338 1.00% Gravity::interpolate_monopole_grav() 21 0.02656 0.02694 0.02766 0.82% Castro::construct_new_gravity_source() 10 0.02314 0.02467 0.02627 0.78% Castro::computeTemp() 63 0.01743 0.01892 0.02388 0.71% Castro::initialize_do_advance() 10 0.01171 0.01609 0.01749 0.52% FabArray::Saxpy() 20 0.01044 0.01286 0.0172 0.51% Castro::construct_old_gravity_source() 10 0.007039 0.01036 0.0162 0.48% Castro::initialize_advance() 10 0.005298 0.01075 0.01398 0.42% MultiFab::contains_nan() 20 0.01031 0.01112 0.01252 0.37% Amr::writePlotFile() 2 0.007292 0.01003 0.01216 0.36% FabArray::setDomainBndry() 41 0.007169 0.009877 0.01213 0.36% VisMF::Write(FabArray) 2 0.00857 0.009485 0.01203 0.36% Castro::initMFs() 1 0.006483 0.007197 0.00926 0.28% StateData::define() 4 0.005435 0.00591 0.007749 0.23% Castro::construct_new_source() 50 0.005801 0.006083 0.006377 0.19% main() 1 0.003571 0.003997 0.004238 0.13% Gravity::get_new_grav_vector() 11 0.002885 0.003376 0.003838 0.11% Gravity::get_old_grav_vector() 10 0.001532 0.002068 0.002607 0.08% Amr::coarseTimeStep() 10 0.0009482 0.001611 0.002441 0.07% Castro::finalize_do_advance() 10 0.0005279 0.001141 0.001541 0.05% AmrLevel::FillPatch() 41 0.0007273 0.00112 0.00125 0.04% Amr::timeStep() 10 0.0001425 0.0001938 0.0004612 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002808 0.0002989 0.0003676 0.01% Castro::do_advance_ctu() 10 0.0001568 0.000175 0.0002116 0.01% Castro::clean_state() 62 0.0001522 0.0001642 0.0001808 0.01% FillPatchIterator::FillFromLevel0() 41 9.481e-05 0.000107 0.0001325 0.00% StateDataPhysBCFunct::() 41 0.0001044 0.0001146 0.0001251 0.00% Castro::construct_old_source() 50 5.025e-05 7.701e-05 0.0001152 0.00% FabArray::ParallelCopy() 41 8.262e-05 9.585e-05 0.0001039 0.00% Castro::do_old_sources() 10 7.734e-05 9.289e-05 0.0001021 0.00% Castro::Castro() 1 4.43e-05 6.881e-05 8.757e-05 0.00% FillPatchSingleLevel 41 6.353e-05 6.903e-05 7.94e-05 0.00% Amr::FinalizeInit() 1 3.757e-06 1.369e-05 7.738e-05 0.00% Castro::apply_source_to_state() 20 3.623e-05 5.334e-05 7.194e-05 0.00% Castro::do_new_sources() 10 5.576e-05 6.232e-05 6.691e-05 0.00% Amr::defBaseLevel() 1 3.88e-05 4.667e-05 6.337e-05 0.00% Castro::advance() 10 4.015e-05 4.844e-05 5.495e-05 0.00% Castro::subcycle_advance_ctu() 10 4.327e-05 4.915e-05 5.358e-05 0.00% Castro::construct_old_gravity() 10 3.392e-05 4.008e-05 5.13e-05 0.00% Castro::construct_new_gravity() 10 3.025e-05 3.506e-05 4.082e-05 0.00% Castro::check_for_nan() 20 2.444e-05 2.686e-05 3.196e-05 0.00% Castro::expand_state() 10 2.372e-05 2.626e-05 2.83e-05 0.00% Castro::post_init() 1 1.411e-05 1.652e-05 2.172e-05 0.00% Castro::post_timestep() 10 1.58e-05 1.726e-05 1.894e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.027e-05 1.207e-05 1.682e-05 0.00% Castro::computeNewDt() 9 9.256e-06 9.935e-06 1.079e-05 0.00% Amr::InitializeInit() 1 2.649e-06 3.515e-06 5.807e-06 0.00% Castro::computeInitialDt() 2 3.577e-06 3.919e-06 4.615e-06 0.00% Amr::init() 1 1.582e-06 2.331e-06 3.035e-06 0.00% Amr::initialInit() 1 1.41e-06 2.001e-06 2.607e-06 0.00% Other 256 0.01069 0.01547 0.01798 0.53% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.359 3.363 3.364 100.00% Amr::coarseTimeStep() 10 3.165 3.165 3.165 94.08% Amr::timeStep() 10 3.153 3.153 3.154 93.77% Castro::advance() 10 3.136 3.137 3.137 93.27% Castro::subcycle_advance_ctu() 10 3.061 3.066 3.08 91.57% Castro::do_advance_ctu() 10 3.061 3.066 3.08 91.57% Castro::construct_ctu_hydro_source() 10 2.321 2.325 2.328 69.20% Gravity::make_radial_gravity() 21 0.3066 0.3166 0.3294 9.79% AmrLevel::FillPatch() 41 0.1833 0.2031 0.2219 6.60% Gravity::get_new_grav_vector() 11 0.2094 0.2102 0.2119 6.30% Castro::construct_old_gravity() 10 0.1803 0.1869 0.1981 5.89% Gravity::get_old_grav_vector() 10 0.1796 0.1863 0.1974 5.87% FillPatchIterator::Initialize 41 0.1502 0.1703 0.1971 5.86% Castro::construct_new_gravity() 10 0.1867 0.1877 0.1889 5.62% Amr::init() 1 0.183 0.1861 0.1871 5.56% Amr::initialInit() 1 0.1684 0.1714 0.1725 5.13% Castro::initialize_do_advance() 10 0.1574 0.1622 0.1663 4.94% FillPatchIterator::FillFromLevel0() 41 0.1113 0.1272 0.1623 4.82% FillPatchSingleLevel 41 0.1112 0.1271 0.1622 4.82% Amr::InitializeInit() 1 0.06305 0.09687 0.1446 4.30% Amr::defBaseLevel() 1 0.06305 0.09687 0.1446 4.30% FabArray::ParallelCopy() 41 0.08113 0.09602 0.1317 3.92% check_for_negative_density() 10 0.02009 0.08705 0.1274 3.79% Castro::clean_state() 62 0.112 0.1194 0.1246 3.70% Castro::initData() 1 0.04268 0.07666 0.1239 3.68% Castro::expand_state() 10 0.1035 0.1095 0.1191 3.54% Castro::estTimeStep() 21 0.03053 0.07636 0.1132 3.36% Amr::FinalizeInit() 1 0.02579 0.07454 0.1093 3.25% Castro::do_old_sources() 10 0.1026 0.1056 0.1079 3.21% FabArray::ParallelCopy_finish() 41 0.03548 0.05409 0.09596 2.85% amrex::Copy() 193 0.0647 0.07901 0.08871 2.64% Castro::computeInitialDt() 2 0.002082 0.0504 0.085 2.53% Castro::initialize_advance() 10 0.05283 0.06805 0.07297 2.17% Castro::computeTemp() 63 0.06012 0.06566 0.07089 2.11% FabArray::setVal() 143 0.05266 0.0645 0.0696 2.07% Castro::do_new_sources() 10 0.06051 0.06355 0.06764 2.01% Castro::normalize_species() 62 0.04576 0.04823 0.05363 1.59% Castro::reset_internal_energy(MultiFab) 63 0.04269 0.04674 0.05217 1.55% Castro::reset_internal_energy(Fab) 1008 0.04241 0.04644 0.0518 1.54% FabArray::ParallelCopy_nowait() 41 0.03571 0.04184 0.04555 1.35% StateDataPhysBCFunct::() 41 0.02933 0.03099 0.03393 1.01% StateData::FillBoundary(geom) 41 0.02922 0.03087 0.0338 1.00% Castro::construct_new_source() 50 0.02904 0.03075 0.03262 0.97% Gravity::interpolate_monopole_grav() 21 0.02656 0.02694 0.02766 0.82% Castro::construct_new_gravity_source() 10 0.02314 0.02467 0.02627 0.78% Castro::post_init() 1 0.02347 0.02366 0.02381 0.71% Amr::writePlotFile() 2 0.02205 0.02216 0.02259 0.67% Castro::finalize_do_advance() 10 0.0141 0.0185 0.02149 0.64% Castro::apply_source_to_state() 20 0.01047 0.01291 0.01727 0.51% FabArray::Saxpy() 20 0.01044 0.01286 0.0172 0.51% Castro::post_timestep() 10 0.01567 0.0162 0.01701 0.51% Castro::construct_old_source() 50 0.007089 0.01043 0.01632 0.49% Castro::construct_old_gravity_source() 10 0.007039 0.01036 0.0162 0.48% Castro::Castro() 1 0.01048 0.0111 0.01274 0.38% Castro::check_for_nan() 20 0.01034 0.01114 0.01255 0.37% MultiFab::contains_nan() 20 0.01031 0.01112 0.01252 0.37% FabArray::setDomainBndry() 41 0.007169 0.009877 0.01213 0.36% VisMF::Write(FabArray) 2 0.00857 0.009485 0.01203 0.36% Castro::initMFs() 1 0.006483 0.007197 0.00926 0.28% Castro::computeNewDt() 9 0.008602 0.008615 0.008625 0.26% AmrLevel::AmrLevel(dm) 1 0.005446 0.005922 0.007766 0.23% StateData::define() 4 0.005435 0.00591 0.007749 0.23% Other 256 0.01522 0.02343 0.02723 0.81% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 29 B 40 B 58 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8653 KiB 8663 KiB 8667 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6732 KiB 6741 KiB 6748 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7125 KiB 7135 KiB 7142 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4547 KiB 4554 KiB 4579 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 205 KiB 226 KiB 248 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 14 KiB 16 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2794 KiB 2798 KiB 2801 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 232 KiB 240 KiB 250 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 36 KiB 43 KiB 60 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2025 KiB 2028 KiB 2029 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 80 KiB 80 KiB 81 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 68 KiB 71 KiB 75 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.06-22-g1d307c2c661a-dirty) finalized