Initializing AMReX (25.06-22-g1d307c2c661a-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.06-22-g1d307c2c661a-dirty) initialized Starting run at 05:18:25 UTC on 2025-08-12. Successfully read inputs file ... Castro git describe: 25.08-12-gf8a308cc1 AMReX git describe: 25.06-22-g1d307c2c6-dirty Microphysics git describe: 25.08-3-gd0f79a2d reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014974095 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.353286479 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.350096727 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.332658632 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.343499854 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.364934871 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.300332037 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.297578238 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.299677566 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.300173703 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.30153002 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007399935 seconds Ending run at 05:18:28 UTC on 2025-08-12. Run time = 3.445034202 Run time without initialization = 3.256175269 Average number of zones advanced per microsecond: 0.805 Average number of zones advanced per microsecond per rank: 0.101 TinyProfiler total time across processes [min...avg...max]: 3.4438 ... 3.4443 ... 3.4451 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1783 2.2328 2.2863 66.37% Gravity::make_radial_gravity() 21 0.2935 0.3119 0.3275 9.51% check_for_negative_density() 10 0.03317 0.08885 0.1456 4.23% Castro::initData() 1 0.03757 0.07746 0.122 3.54% Castro::estTimeStep() 21 0.03424 0.07747 0.1173 3.40% amrex::Copy() 193 0.07744 0.08357 0.09279 2.69% FabArray::setVal() 143 0.06852 0.07311 0.0808 2.35% FabArray::ParallelCopy_finish() 41 0.05598 0.06918 0.0733 2.13% Castro::normalize_species() 62 0.04804 0.05178 0.05681 1.65% Castro::reset_internal_energy(Fab) 1008 0.04529 0.04757 0.05024 1.46% FabArray::ParallelCopy_nowait() 41 0.0399 0.04318 0.04842 1.41% FillPatchIterator::Initialize 41 0.02946 0.03482 0.03838 1.11% StateData::FillBoundary(geom) 41 0.02884 0.03191 0.03568 1.04% Gravity::interpolate_monopole_grav() 21 0.02666 0.02732 0.02984 0.87% Castro::construct_new_gravity_source() 10 0.02397 0.02616 0.02965 0.86% Castro::initialize_do_advance() 10 0.01438 0.01755 0.02174 0.63% Castro::computeTemp() 63 0.0185 0.01874 0.01901 0.55% MultiFab::contains_nan() 20 0.01033 0.01155 0.01455 0.42% Castro::initialize_advance() 10 0.01111 0.01215 0.01412 0.41% FabArray::setDomainBndry() 41 0.00819 0.01118 0.0138 0.40% FabArray::Saxpy() 20 0.01181 0.01301 0.01362 0.40% VisMF::Write(FabArray) 2 0.009353 0.009742 0.01201 0.35% Castro::construct_new_source() 50 0.006064 0.007047 0.01101 0.32% Castro::construct_old_gravity_source() 10 0.008265 0.009691 0.01037 0.30% Amr::writePlotFile() 2 0.007512 0.009785 0.01024 0.30% Amr::coarseTimeStep() 10 0.003281 0.00642 0.008375 0.24% Castro::initMFs() 1 0.00652 0.007256 0.007523 0.22% main() 1 0.003822 0.004081 0.004446 0.13% Gravity::get_new_grav_vector() 11 0.003134 0.003525 0.003843 0.11% Gravity::get_old_grav_vector() 10 0.001495 0.00213 0.002558 0.07% Castro::finalize_do_advance() 10 0.001288 0.001324 0.0014 0.04% AmrLevel::FillPatch() 41 0.0008015 0.0009241 0.001036 0.03% Amr::timeStep() 10 0.0001361 0.0001854 0.0004245 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002792 0.0002873 0.0003036 0.01% Castro::do_advance_ctu() 10 0.000144 0.0001644 0.0001856 0.01% Castro::clean_state() 62 0.0001419 0.0001612 0.0001827 0.01% StateDataPhysBCFunct::() 41 9.856e-05 0.0001153 0.0001479 0.00% FillPatchIterator::FillFromLevel0() 41 9.939e-05 0.0001108 0.0001174 0.00% FabArray::ParallelCopy() 41 8.355e-05 9.771e-05 0.0001127 0.00% Amr::FinalizeInit() 1 3.817e-06 1.736e-05 0.0001095 0.00% Castro::do_old_sources() 10 6.715e-05 9.226e-05 0.0001059 0.00% Castro::Castro() 1 5.638e-05 7.375e-05 8.585e-05 0.00% Castro::construct_old_source() 50 5.043e-05 6.943e-05 8.265e-05 0.00% FillPatchSingleLevel 41 6.632e-05 7.074e-05 8.221e-05 0.00% Castro::do_new_sources() 10 5.074e-05 6.581e-05 7.609e-05 0.00% Castro::apply_source_to_state() 20 4.234e-05 5.339e-05 6.89e-05 0.00% Castro::subcycle_advance_ctu() 10 4.279e-05 4.833e-05 5.71e-05 0.00% Amr::defBaseLevel() 1 4.582e-05 5.041e-05 5.594e-05 0.00% Castro::advance() 10 4.082e-05 4.599e-05 5.432e-05 0.00% Castro::construct_old_gravity() 10 3.45e-05 3.905e-05 4.617e-05 0.00% Castro::construct_new_gravity() 10 2.892e-05 3.379e-05 4.252e-05 0.00% Castro::check_for_nan() 20 2.278e-05 2.664e-05 3.82e-05 0.00% Castro::expand_state() 10 2.111e-05 2.367e-05 2.769e-05 0.00% Castro::post_init() 1 1.543e-05 1.73e-05 2.226e-05 0.00% Castro::post_timestep() 10 1.559e-05 1.883e-05 2.124e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.156e-05 1.217e-05 1.294e-05 0.00% Castro::computeNewDt() 9 9.489e-06 9.971e-06 1.067e-05 0.00% Amr::InitializeInit() 1 2.818e-06 3.592e-06 6.298e-06 0.00% Castro::computeInitialDt() 2 3.423e-06 3.698e-06 3.963e-06 0.00% Amr::init() 1 2.033e-06 2.668e-06 3.342e-06 0.00% Amr::initialInit() 1 1.622e-06 2.085e-06 2.676e-06 0.00% Other 260 0.0167 0.01922 0.02094 0.61% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.444 3.444 3.445 100.00% Amr::coarseTimeStep() 10 3.244 3.244 3.244 94.17% Amr::timeStep() 10 3.226 3.228 3.231 93.80% Castro::advance() 10 3.21 3.211 3.212 93.24% Castro::subcycle_advance_ctu() 10 3.125 3.131 3.137 91.07% Castro::do_advance_ctu() 10 3.125 3.131 3.137 91.07% Castro::construct_ctu_hydro_source() 10 2.342 2.344 2.347 68.12% Gravity::make_radial_gravity() 21 0.31 0.3286 0.342 9.93% AmrLevel::FillPatch() 41 0.2083 0.2248 0.2384 6.92% Gravity::get_new_grav_vector() 11 0.2149 0.2158 0.2164 6.28% Castro::construct_old_gravity() 10 0.1831 0.2006 0.2131 6.19% Gravity::get_old_grav_vector() 10 0.1821 0.1997 0.2121 6.16% Castro::initialize_do_advance() 10 0.1704 0.186 0.2062 5.99% FillPatchIterator::Initialize 41 0.1792 0.1908 0.1985 5.76% Castro::construct_new_gravity() 10 0.1914 0.1923 0.193 5.60% Amr::init() 1 0.1878 0.1881 0.1889 5.48% Amr::initialInit() 1 0.1727 0.173 0.1738 5.05% FillPatchIterator::FillFromLevel0() 41 0.1306 0.1448 0.1507 4.37% FillPatchSingleLevel 41 0.1305 0.1446 0.1506 4.37% Castro::expand_state() 10 0.1177 0.1309 0.1496 4.34% check_for_negative_density() 10 0.03317 0.08885 0.1456 4.23% Amr::InitializeInit() 1 0.06003 0.09974 0.1451 4.21% Amr::defBaseLevel() 1 0.06002 0.09974 0.1451 4.21% Castro::clean_state() 62 0.1205 0.1238 0.1282 3.72% Castro::initData() 1 0.04139 0.08166 0.1267 3.68% FabArray::ParallelCopy() 41 0.09815 0.1126 0.1206 3.50% Castro::estTimeStep() 21 0.03424 0.07747 0.1173 3.40% Amr::FinalizeInit() 1 0.02762 0.07325 0.1129 3.28% Castro::do_old_sources() 10 0.09649 0.1004 0.1036 3.01% amrex::Copy() 193 0.07744 0.08357 0.09279 2.69% Castro::computeInitialDt() 2 0.002394 0.04804 0.08768 2.55% Castro::initialize_advance() 10 0.06936 0.07553 0.08169 2.37% FabArray::setVal() 143 0.06852 0.07311 0.0808 2.35% Castro::do_new_sources() 10 0.06679 0.06931 0.07856 2.28% FabArray::ParallelCopy_finish() 41 0.05598 0.06918 0.0733 2.13% Castro::computeTemp() 63 0.06407 0.0666 0.06947 2.02% Castro::normalize_species() 62 0.04804 0.05178 0.05681 1.65% Castro::reset_internal_energy(MultiFab) 63 0.04557 0.04786 0.05053 1.47% Castro::reset_internal_energy(Fab) 1008 0.04529 0.04757 0.05024 1.46% FabArray::ParallelCopy_nowait() 41 0.04 0.04328 0.04853 1.41% Castro::construct_new_source() 50 0.03004 0.03321 0.03958 1.15% StateDataPhysBCFunct::() 41 0.02897 0.03202 0.03583 1.04% StateData::FillBoundary(geom) 41 0.02884 0.03191 0.03568 1.04% Gravity::interpolate_monopole_grav() 21 0.02666 0.02732 0.02984 0.87% Castro::construct_new_gravity_source() 10 0.02397 0.02616 0.02965 0.86% Castro::finalize_do_advance() 10 0.01303 0.02227 0.02475 0.72% Castro::post_init() 1 0.02422 0.02443 0.0246 0.71% Amr::writePlotFile() 2 0.02257 0.02263 0.02277 0.66% Castro::post_timestep() 10 0.01626 0.01747 0.01911 0.55% Castro::check_for_nan() 20 0.01037 0.01158 0.01458 0.42% MultiFab::contains_nan() 20 0.01033 0.01155 0.01455 0.42% FabArray::setDomainBndry() 41 0.00819 0.01118 0.0138 0.40% Castro::apply_source_to_state() 20 0.01186 0.01307 0.01368 0.40% FabArray::Saxpy() 20 0.01181 0.01301 0.01362 0.40% Castro::Castro() 1 0.009359 0.01158 0.01214 0.35% VisMF::Write(FabArray) 2 0.009353 0.009742 0.01201 0.35% Castro::construct_old_source() 50 0.008315 0.009761 0.01045 0.30% Castro::construct_old_gravity_source() 10 0.008265 0.009691 0.01037 0.30% Castro::computeNewDt() 9 0.008481 0.0085 0.008515 0.25% Castro::initMFs() 1 0.00652 0.007256 0.007523 0.22% AmrLevel::AmrLevel(dm) 1 0.005498 0.006113 0.006352 0.18% Other 260 0.0215 0.02535 0.02953 0.86% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 34 B 41 B 80 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 13 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8661 KiB 8670 KiB 8672 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6739 KiB 6744 KiB 6746 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7134 KiB 7141 KiB 7143 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4533 KiB 4541 KiB 4550 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 228 KiB 249 KiB 273 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 16 KiB 17 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2792 KiB 2795 KiB 2797 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 229 KiB 243 KiB 253 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 43 KiB 51 KiB 57 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 80 KiB 80 KiB 80 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 67 KiB 74 KiB 79 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.06-22-g1d307c2c661a-dirty) finalized