Initializing AMReX (25.06-22-g1d307c2c661a-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.06-22-g1d307c2c661a-dirty) initialized Starting run at 05:17:55 UTC on 2025-08-13. Successfully read inputs file ... Castro git describe: 25.08-12-gf8a308cc1 AMReX git describe: 25.06-22-g1d307c2c6-dirty Microphysics git describe: 25.08-3-gd0f79a2d reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014503472 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.347011954 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.331387387 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.325277649 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.320632173 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.363727061 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.309224589 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.303315164 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.299901241 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.299038095 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.297747488 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.00804238 seconds Ending run at 05:17:59 UTC on 2025-08-13. Run time = 3.374355174 Run time without initialization = 3.210668537 Average number of zones advanced per microsecond: 0.816 Average number of zones advanced per microsecond per rank: 0.102 TinyProfiler total time across processes [min...avg...max]: 3.3726 ... 3.3735 ... 3.3744 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1998 2.2521 2.2878 67.80% Gravity::make_radial_gravity() 21 0.2847 0.294 0.3133 9.29% check_for_negative_density() 10 0.04533 0.09142 0.1504 4.46% amrex::Copy() 193 0.06409 0.08326 0.1011 3.00% Castro::initData() 1 0.03692 0.07071 0.1009 2.99% Castro::estTimeStep() 21 0.02345 0.05823 0.09594 2.84% FabArray::ParallelCopy_finish() 41 0.03614 0.0487 0.09035 2.68% FabArray::setVal() 143 0.05255 0.0654 0.07106 2.11% Castro::reset_internal_energy(Fab) 1008 0.04295 0.04567 0.04834 1.43% Castro::normalize_species() 62 0.0449 0.0463 0.04755 1.41% FabArray::ParallelCopy_nowait() 41 0.03671 0.04243 0.04425 1.31% StateData::FillBoundary(geom) 41 0.02751 0.03282 0.03859 1.14% FillPatchIterator::Initialize 41 0.02764 0.03339 0.03577 1.06% Castro::construct_new_gravity_source() 10 0.02367 0.02488 0.02747 0.81% Gravity::interpolate_monopole_grav() 21 0.02661 0.0268 0.02718 0.81% Castro::computeTemp() 63 0.01752 0.01816 0.01881 0.56% Castro::initialize_do_advance() 10 0.01145 0.01652 0.01768 0.52% Castro::initialize_advance() 10 0.005335 0.01063 0.01387 0.41% FabArray::Saxpy() 20 0.01031 0.01248 0.01359 0.40% FabArray::setDomainBndry() 41 0.006999 0.01099 0.01332 0.39% VisMF::Write(FabArray) 2 0.009243 0.009859 0.01303 0.39% MultiFab::contains_nan() 20 0.01041 0.01129 0.01223 0.36% Amr::writePlotFile() 2 0.007743 0.009884 0.01039 0.31% Castro::construct_old_gravity_source() 10 0.00698 0.009415 0.01001 0.30% Castro::initMFs() 1 0.006498 0.00694 0.008193 0.24% Castro::enforce_min_density() 62 0.005987 0.006202 0.006458 0.19% Castro::construct_new_source() 50 0.005642 0.005991 0.006094 0.18% main() 1 0.003868 0.004219 0.004661 0.14% Gravity::get_new_grav_vector() 11 0.003345 0.003637 0.00402 0.12% Amr::coarseTimeStep() 10 0.001227 0.001975 0.00283 0.08% Gravity::get_old_grav_vector() 10 0.001457 0.002116 0.002515 0.07% AmrLevel::FillPatch() 41 0.0007879 0.001168 0.001299 0.04% Castro::finalize_do_advance() 10 0.0006052 0.001114 0.001263 0.04% Amr::timeStep() 10 0.0001492 0.0001951 0.0004348 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002769 0.0002966 0.0003176 0.01% Castro::do_advance_ctu() 10 0.0001629 0.0001766 0.0002025 0.01% Castro::clean_state() 62 0.0001454 0.000162 0.0001755 0.01% StateDataPhysBCFunct::() 41 0.0001075 0.0001191 0.000135 0.00% FillPatchIterator::FillFromLevel0() 41 9.997e-05 0.0001101 0.0001254 0.00% Castro::Castro() 1 5.277e-05 8.357e-05 0.0001122 0.00% Castro::do_old_sources() 10 7.587e-05 9.322e-05 0.0001058 0.00% FabArray::ParallelCopy() 41 8.757e-05 9.459e-05 0.000104 0.00% FillPatchSingleLevel 41 6.522e-05 7.039e-05 7.715e-05 0.00% Castro::do_new_sources() 10 5.979e-05 6.735e-05 7.685e-05 0.00% Castro::construct_old_source() 50 5.306e-05 6.469e-05 7.172e-05 0.00% Amr::FinalizeInit() 1 2.896e-06 1.262e-05 6.563e-05 0.00% Amr::defBaseLevel() 1 4.119e-05 5.59e-05 6.55e-05 0.00% Castro::subcycle_advance_ctu() 10 4.313e-05 5.002e-05 6.426e-05 0.00% Castro::apply_source_to_state() 20 4.418e-05 5.488e-05 6.211e-05 0.00% Castro::advance() 10 4.109e-05 5.05e-05 5.548e-05 0.00% Castro::construct_old_gravity() 10 3.345e-05 4.231e-05 5.255e-05 0.00% Castro::construct_new_gravity() 10 3.205e-05 3.643e-05 5.021e-05 0.00% Castro::expand_state() 10 2.339e-05 2.726e-05 3.625e-05 0.00% Castro::check_for_nan() 20 2.349e-05 2.53e-05 2.848e-05 0.00% Castro::post_init() 1 1.444e-05 1.814e-05 2.176e-05 0.00% Castro::post_timestep() 10 1.49e-05 1.621e-05 1.783e-05 0.00% Castro::computeNewDt() 9 9.59e-06 1.099e-05 1.304e-05 0.00% Amr::InitializeInit() 1 2.635e-06 3.876e-06 7.725e-06 0.00% Amr::init() 1 2.11e-06 3.186e-06 6.367e-06 0.00% Castro::computeInitialDt() 2 2.749e-06 3.401e-06 3.966e-06 0.00% Amr::initialInit() 1 2.096e-06 2.346e-06 2.707e-06 0.00% Other 199 0.009252 0.01278 0.01462 0.43% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.373 3.373 3.374 100.00% Amr::coarseTimeStep() 10 3.198 3.198 3.198 94.77% Amr::timeStep() 10 3.186 3.186 3.187 94.45% Castro::advance() 10 3.17 3.17 3.171 93.96% Castro::subcycle_advance_ctu() 10 3.094 3.099 3.116 92.33% Castro::do_advance_ctu() 10 3.094 3.099 3.116 92.33% Castro::construct_ctu_hydro_source() 10 2.354 2.365 2.371 70.27% Gravity::make_radial_gravity() 21 0.3021 0.3113 0.3268 9.69% AmrLevel::FillPatch() 41 0.1889 0.2046 0.2137 6.33% Gravity::get_new_grav_vector() 11 0.2054 0.2066 0.2074 6.15% Castro::construct_old_gravity() 10 0.1802 0.1866 0.2009 5.95% Gravity::get_old_grav_vector() 10 0.1795 0.186 0.2003 5.93% FillPatchIterator::Initialize 41 0.1583 0.1688 0.1897 5.62% Castro::construct_new_gravity() 10 0.1838 0.1842 0.1849 5.48% Castro::initialize_do_advance() 10 0.1599 0.1669 0.1697 5.03% Amr::init() 1 0.162 0.1629 0.1633 4.84% FillPatchIterator::FillFromLevel0() 41 0.1132 0.1245 0.1551 4.60% FillPatchSingleLevel 41 0.1131 0.1244 0.155 4.59% check_for_negative_density() 10 0.04533 0.09142 0.1504 4.46% Amr::initialInit() 1 0.1474 0.1486 0.1492 4.42% FabArray::ParallelCopy() 41 0.07958 0.09134 0.1273 3.77% Amr::InitializeInit() 1 0.05803 0.09223 0.1228 3.64% Amr::defBaseLevel() 1 0.05802 0.09223 0.1228 3.64% Castro::expand_state() 10 0.1053 0.1133 0.1213 3.60% Castro::clean_state() 62 0.111 0.116 0.1189 3.52% Castro::do_old_sources() 10 0.09265 0.0983 0.1059 3.14% Castro::initData() 1 0.04074 0.07456 0.1048 3.10% amrex::Copy() 193 0.06409 0.08326 0.1011 3.00% Castro::estTimeStep() 21 0.02345 0.05823 0.09594 2.84% Amr::FinalizeInit() 1 0.02637 0.05636 0.09095 2.70% FabArray::ParallelCopy_finish() 41 0.03614 0.0487 0.09035 2.68% Castro::initialize_advance() 10 0.05083 0.06773 0.07291 2.16% FabArray::setVal() 143 0.05255 0.0654 0.07106 2.11% Castro::do_new_sources() 10 0.06048 0.06409 0.06961 2.06% Castro::computeTemp() 63 0.06074 0.06413 0.0672 1.99% Castro::computeInitialDt() 2 0.002101 0.0322 0.06674 1.98% Castro::reset_internal_energy(MultiFab) 63 0.04322 0.04597 0.04863 1.44% Castro::reset_internal_energy(Fab) 1008 0.04295 0.04567 0.04834 1.43% Castro::normalize_species() 62 0.0449 0.0463 0.04755 1.41% FabArray::ParallelCopy_nowait() 41 0.03685 0.04254 0.04434 1.31% StateDataPhysBCFunct::() 41 0.02762 0.03294 0.03871 1.15% StateData::FillBoundary(geom) 41 0.02751 0.03282 0.03859 1.14% Castro::construct_new_source() 50 0.02946 0.03087 0.03345 0.99% Castro::construct_new_gravity_source() 10 0.02367 0.02488 0.02747 0.81% Gravity::interpolate_monopole_grav() 21 0.02661 0.0268 0.02718 0.81% Castro::post_init() 1 0.02281 0.02359 0.02379 0.70% Amr::writePlotFile() 2 0.02232 0.02242 0.0228 0.68% Castro::finalize_do_advance() 10 0.01214 0.01854 0.02194 0.65% Castro::post_timestep() 10 0.01505 0.01584 0.01644 0.49% Castro::apply_source_to_state() 20 0.01036 0.01254 0.01365 0.40% FabArray::Saxpy() 20 0.01031 0.01248 0.01359 0.40% FabArray::setDomainBndry() 41 0.006999 0.01099 0.01332 0.39% VisMF::Write(FabArray) 2 0.009243 0.009859 0.01303 0.39% Castro::check_for_nan() 20 0.01043 0.01131 0.01226 0.36% MultiFab::contains_nan() 20 0.01041 0.01129 0.01223 0.36% Castro::Castro() 1 0.01047 0.01099 0.0119 0.35% Castro::construct_old_source() 50 0.007033 0.00948 0.01008 0.30% Castro::construct_old_gravity_source() 10 0.00698 0.009415 0.01001 0.30% Castro::computeNewDt() 9 0.008597 0.008619 0.008642 0.26% Castro::initMFs() 1 0.006498 0.00694 0.008193 0.24% Castro::enforce_min_density() 62 0.005987 0.006202 0.006458 0.19% Other 199 0.01937 0.02433 0.02763 0.82% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 34 B 43 B 69 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8658 KiB 8669 KiB 8671 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6788 KiB 6790 KiB 6792 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7132 KiB 7139 KiB 7141 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4581 KiB 4589 KiB 4610 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 210 KiB 228 KiB 241 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 16 KiB 17 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2815 KiB 2818 KiB 2819 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 228 KiB 235 KiB 246 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 36 KiB 41 KiB 59 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2029 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 78 KiB 78 KiB 79 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 68 KiB 70 KiB 76 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.06-22-g1d307c2c661a-dirty) finalized