Initializing AMReX (25.06-22-g1d307c2c661a-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.06-22-g1d307c2c661a-dirty) initialized Starting run at 05:17:42 UTC on 2025-08-14. Successfully read inputs file ... Castro git describe: 25.08-12-gf8a308cc1 AMReX git describe: 25.06-22-g1d307c2c6-dirty Microphysics git describe: 25.08-3-gd0f79a2d reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.017027821 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.338975337 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.335347488 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.317861348 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.317948278 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.365883328 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.305886659 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.297524465 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.301724101 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.29940385 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.29974282 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007779541 seconds Ending run at 05:17:45 UTC on 2025-08-14. Run time = 3.379153919 Run time without initialization = 3.193333358 Average number of zones advanced per microsecond: 0.821 Average number of zones advanced per microsecond per rank: 0.103 TinyProfiler total time across processes [min...avg...max]: 3.3725 ... 3.3772 ... 3.3793 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1894 2.2442 2.2744 67.30% Gravity::make_radial_gravity() 21 0.2895 0.2956 0.3106 9.19% check_for_negative_density() 10 0.0442 0.07285 0.1322 3.91% Castro::initData() 1 0.0387 0.0737 0.1056 3.12% Castro::estTimeStep() 21 0.02732 0.06256 0.09587 2.84% amrex::Copy() 193 0.07035 0.08252 0.09384 2.78% FabArray::setVal() 143 0.06317 0.06799 0.0717 2.12% FabArray::ParallelCopy_finish() 41 0.03671 0.05574 0.0698 2.07% Castro::normalize_species() 62 0.0449 0.04697 0.05243 1.55% Castro::reset_internal_energy(Fab) 1008 0.04139 0.04562 0.04921 1.46% FabArray::ParallelCopy_nowait() 41 0.0394 0.0425 0.04628 1.37% FillPatchIterator::Initialize 41 0.02906 0.03455 0.0391 1.16% StateData::FillBoundary(geom) 41 0.0284 0.0317 0.03364 1.00% Gravity::interpolate_monopole_grav() 21 0.02653 0.02693 0.02732 0.81% Castro::construct_new_gravity_source() 10 0.02368 0.02486 0.02667 0.79% FabArray::Saxpy() 20 0.01069 0.01351 0.02042 0.60% Castro::computeTemp() 63 0.01667 0.01794 0.01856 0.55% Castro::initialize_do_advance() 10 0.01295 0.01696 0.01775 0.53% Castro::initialize_advance() 10 0.01062 0.01223 0.01454 0.43% VisMF::Write(FabArray) 2 0.009263 0.0102 0.01395 0.41% FabArray::setDomainBndry() 41 0.006961 0.01083 0.01328 0.39% Amr::writePlotFile() 2 0.00816 0.01169 0.01254 0.37% MultiFab::contains_nan() 20 0.0105 0.01109 0.01229 0.36% Castro::enforce_min_density() 62 0.005901 0.006922 0.01171 0.35% Castro::initMFs() 1 0.006422 0.007799 0.01026 0.30% Castro::construct_old_gravity_source() 10 0.00703 0.009544 0.01014 0.30% StateData::define() 4 0.005296 0.00674 0.008981 0.27% Castro::construct_new_source() 50 0.00564 0.006074 0.006484 0.19% main() 1 0.003879 0.004234 0.004607 0.14% Gravity::get_new_grav_vector() 11 0.003056 0.003701 0.00417 0.12% Gravity::get_old_grav_vector() 10 0.001841 0.00217 0.002576 0.08% Amr::coarseTimeStep() 10 0.000971 0.001827 0.00255 0.08% Castro::finalize_do_advance() 10 0.0006587 0.001139 0.001546 0.05% AmrLevel::FillPatch() 41 0.0009751 0.001061 0.001157 0.03% Amr::timeStep() 10 0.0001477 0.0001905 0.0004103 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002793 0.0003067 0.0003569 0.01% Castro::do_advance_ctu() 10 0.0001546 0.0001708 0.0001914 0.01% Castro::clean_state() 62 0.0001495 0.0001632 0.0001781 0.01% StateDataPhysBCFunct::() 41 0.0001245 0.0001288 0.0001358 0.00% FabArray::ParallelCopy() 41 8.722e-05 0.000105 0.0001345 0.00% Amr::defBaseLevel() 1 5.282e-05 6.801e-05 0.000132 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001017 0.0001109 0.0001266 0.00% Castro::do_old_sources() 10 9.352e-05 9.648e-05 0.0001006 0.00% Amr::FinalizeInit() 1 3.516e-06 1.55e-05 9.568e-05 0.00% Castro::construct_old_source() 50 5.71e-05 7.062e-05 8.08e-05 0.00% FillPatchSingleLevel 41 6.503e-05 7.236e-05 7.847e-05 0.00% Castro::apply_source_to_state() 20 4.969e-05 5.826e-05 7.292e-05 0.00% Castro::Castro() 1 5.017e-05 5.823e-05 7.047e-05 0.00% Castro::do_new_sources() 10 6.007e-05 6.489e-05 6.922e-05 0.00% Castro::advance() 10 4.023e-05 5.005e-05 6.122e-05 0.00% Castro::subcycle_advance_ctu() 10 4.119e-05 5.353e-05 6.103e-05 0.00% Castro::construct_new_gravity() 10 2.968e-05 3.693e-05 4.739e-05 0.00% Castro::construct_old_gravity() 10 3.646e-05 4.111e-05 4.571e-05 0.00% Castro::expand_state() 10 2.344e-05 2.879e-05 3.28e-05 0.00% Castro::check_for_nan() 20 2.336e-05 2.699e-05 3.178e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.152e-05 1.626e-05 2.892e-05 0.00% Castro::post_init() 1 1.681e-05 1.94e-05 2.424e-05 0.00% Amr::initialInit() 1 1.705e-06 4.196e-06 1.85e-05 0.00% Castro::post_timestep() 10 1.357e-05 1.576e-05 1.844e-05 0.00% Castro::computeNewDt() 9 9.272e-06 1.007e-05 1.087e-05 0.00% Amr::InitializeInit() 1 2.759e-06 3.958e-06 6.458e-06 0.00% Castro::computeInitialDt() 2 3e-06 3.693e-06 4.943e-06 0.00% Amr::init() 1 2.138e-06 2.866e-06 4.329e-06 0.00% Other 194 0.00489 0.01122 0.01471 0.44% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.372 3.377 3.379 100.00% Amr::coarseTimeStep() 10 3.181 3.181 3.181 94.13% Amr::timeStep() 10 3.169 3.169 3.17 93.81% Castro::advance() 10 3.153 3.154 3.154 93.33% Castro::subcycle_advance_ctu() 10 3.075 3.078 3.08 91.14% Castro::do_advance_ctu() 10 3.075 3.078 3.08 91.14% Castro::construct_ctu_hydro_source() 10 2.328 2.338 2.342 69.32% Gravity::make_radial_gravity() 21 0.3062 0.3124 0.3245 9.60% AmrLevel::FillPatch() 41 0.2019 0.2103 0.2191 6.48% Gravity::get_new_grav_vector() 11 0.2099 0.2117 0.2129 6.30% Castro::construct_old_gravity() 10 0.1781 0.1834 0.1939 5.74% Gravity::get_old_grav_vector() 10 0.1773 0.1827 0.1932 5.72% Castro::construct_new_gravity() 10 0.185 0.186 0.1875 5.55% Amr::init() 1 0.1792 0.1838 0.1862 5.51% FillPatchIterator::Initialize 41 0.1682 0.1759 0.184 5.45% Amr::initialInit() 1 0.1622 0.1668 0.1697 5.02% Castro::initialize_do_advance() 10 0.1537 0.1639 0.169 5.00% FillPatchIterator::FillFromLevel0() 41 0.1166 0.1305 0.1382 4.09% FillPatchSingleLevel 41 0.1165 0.1304 0.138 4.08% Amr::InitializeInit() 1 0.06402 0.1002 0.1326 3.92% Amr::defBaseLevel() 1 0.06402 0.1002 0.1326 3.92% check_for_negative_density() 10 0.0442 0.07285 0.1322 3.91% Castro::clean_state() 62 0.1116 0.1171 0.1229 3.64% Castro::do_old_sources() 10 0.108 0.1108 0.1176 3.48% Castro::expand_state() 10 0.104 0.1102 0.1145 3.39% FabArray::ParallelCopy() 41 0.08318 0.09845 0.1094 3.24% Castro::initData() 1 0.04246 0.0773 0.1091 3.23% Amr::FinalizeInit() 1 0.02962 0.06664 0.1039 3.07% Castro::estTimeStep() 21 0.02732 0.06256 0.09587 2.84% amrex::Copy() 193 0.07035 0.08252 0.09384 2.78% Castro::computeInitialDt() 2 0.002317 0.03928 0.07669 2.27% Castro::initialize_advance() 10 0.07031 0.07249 0.07532 2.23% FabArray::setVal() 143 0.06317 0.06799 0.0717 2.12% FabArray::ParallelCopy_finish() 41 0.03671 0.05574 0.0698 2.07% Castro::do_new_sources() 10 0.05988 0.0639 0.06862 2.03% Castro::computeTemp() 63 0.05834 0.06387 0.06788 2.01% Castro::normalize_species() 62 0.0449 0.04697 0.05243 1.55% Castro::reset_internal_energy(MultiFab) 63 0.04167 0.04593 0.04957 1.47% Castro::reset_internal_energy(Fab) 1008 0.04139 0.04562 0.04921 1.46% FabArray::ParallelCopy_nowait() 41 0.03953 0.04261 0.04637 1.37% StateDataPhysBCFunct::() 41 0.02853 0.03183 0.03377 1.00% StateData::FillBoundary(geom) 41 0.0284 0.0317 0.03364 1.00% Castro::construct_new_source() 50 0.02946 0.03093 0.03315 0.98% Castro::post_init() 1 0.02669 0.02697 0.02742 0.81% Gravity::interpolate_monopole_grav() 21 0.02653 0.02693 0.02732 0.81% Castro::construct_new_gravity_source() 10 0.02368 0.02486 0.02667 0.79% Amr::writePlotFile() 2 0.02436 0.02486 0.02506 0.74% Castro::apply_source_to_state() 20 0.01076 0.01357 0.02049 0.61% FabArray::Saxpy() 20 0.01069 0.01351 0.02042 0.60% Castro::finalize_do_advance() 10 0.01203 0.01597 0.02001 0.59% Castro::post_timestep() 10 0.015 0.01562 0.01629 0.48% Castro::Castro() 1 0.009413 0.01142 0.01432 0.42% VisMF::Write(FabArray) 2 0.009263 0.0102 0.01395 0.41% FabArray::setDomainBndry() 41 0.006961 0.01083 0.01328 0.39% Castro::check_for_nan() 20 0.01053 0.01112 0.01232 0.36% MultiFab::contains_nan() 20 0.0105 0.01109 0.01229 0.36% Castro::enforce_min_density() 62 0.005901 0.006922 0.01171 0.35% Castro::initMFs() 1 0.006422 0.007799 0.01026 0.30% Castro::construct_old_source() 50 0.007087 0.009615 0.01022 0.30% Castro::construct_old_gravity_source() 10 0.00703 0.009544 0.01014 0.30% AmrLevel::AmrLevel(dm) 1 0.005315 0.006757 0.009002 0.27% StateData::define() 4 0.005296 0.00674 0.008981 0.27% Castro::computeNewDt() 9 0.008451 0.008469 0.008491 0.25% Other 194 0.009625 0.02078 0.02701 0.80% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 35 B 40 B 54 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8645 KiB 8655 KiB 8659 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6736 KiB 6745 KiB 6755 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7120 KiB 7130 KiB 7140 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4546 KiB 4552 KiB 4558 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 222 KiB 231 KiB 240 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 16 KiB 17 KiB 22 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2796 KiB 2800 KiB 2805 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 231 KiB 235 KiB 244 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 37 KiB 43 KiB 48 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2023 KiB 2026 KiB 2028 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 79 KiB 80 KiB 81 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 67 KiB 69 KiB 73 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.06-22-g1d307c2c661a-dirty) finalized