Initializing AMReX (25.06-22-g1d307c2c661a-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.06-22-g1d307c2c661a-dirty) initialized Starting run at 05:17:34 UTC on 2025-08-18. Successfully read inputs file ... Castro git describe: 25.08-12-gf8a308cc1 AMReX git describe: 25.06-22-g1d307c2c6-dirty Microphysics git describe: 25.08-4-gd418e231 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015157052 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.343054609 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.329988309 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.323063765 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.316157586 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.363573316 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.307356824 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.297450723 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.299495967 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.298989048 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.300015322 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007612817 seconds Ending run at 05:17:37 UTC on 2025-08-18. Run time = 3.37639022 Run time without initialization = 3.191262446 Average number of zones advanced per microsecond: 0.821 Average number of zones advanced per microsecond per rank: 0.103 TinyProfiler total time across processes [min...avg...max]: 3.3755 ... 3.3759 ... 3.3764 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1604 2.2246 2.2568 66.84% Gravity::make_radial_gravity() 21 0.2894 0.2983 0.3116 9.23% check_for_negative_density() 10 0.04403 0.07917 0.1437 4.26% Castro::initData() 1 0.03754 0.07338 0.1199 3.55% Castro::estTimeStep() 21 0.02857 0.07491 0.1128 3.34% amrex::Copy() 193 0.06995 0.0828 0.09394 2.78% FabArray::setVal() 143 0.06705 0.06994 0.07351 2.18% FabArray::ParallelCopy_finish() 41 0.04034 0.05571 0.06707 1.99% Castro::normalize_species() 62 0.04593 0.04943 0.05676 1.68% Castro::reset_internal_energy(Fab) 1008 0.04116 0.04549 0.04935 1.46% FabArray::ParallelCopy_nowait() 41 0.03718 0.04238 0.04549 1.35% FillPatchIterator::Initialize 41 0.0292 0.03455 0.03926 1.16% StateData::FillBoundary(geom) 41 0.03006 0.0312 0.03295 0.98% Gravity::interpolate_monopole_grav() 21 0.02647 0.02679 0.02724 0.81% Castro::construct_new_gravity_source() 10 0.02333 0.02473 0.02674 0.79% Castro::computeTemp() 63 0.01718 0.01824 0.01913 0.57% Castro::initialize_do_advance() 10 0.012 0.01713 0.0189 0.56% FabArray::Saxpy() 20 0.01215 0.01345 0.01817 0.54% Castro::initialize_advance() 10 0.01121 0.01285 0.01463 0.43% FabArray::setDomainBndry() 41 0.007893 0.01054 0.01341 0.40% VisMF::Write(FabArray) 2 0.009186 0.009824 0.0126 0.37% MultiFab::contains_nan() 20 0.01054 0.0114 0.01228 0.36% Castro::construct_old_gravity_source() 10 0.009931 0.01036 0.01156 0.34% Amr::writePlotFile() 2 0.00734 0.01025 0.01089 0.32% Castro::initMFs() 1 0.006486 0.006962 0.007773 0.23% Castro::construct_new_source() 50 0.00592 0.006306 0.006562 0.19% Castro::enforce_min_density() 62 0.005889 0.006249 0.006527 0.19% main() 1 0.003493 0.003877 0.004106 0.12% Amr::coarseTimeStep() 10 0.001392 0.002616 0.003796 0.11% Gravity::get_new_grav_vector() 11 0.002882 0.003395 0.003781 0.11% Gravity::get_old_grav_vector() 10 0.001612 0.002222 0.002723 0.08% Castro::finalize_do_advance() 10 0.000562 0.00106 0.00117 0.03% AmrLevel::FillPatch() 41 0.0007916 0.0009791 0.001113 0.03% Amr::timeStep() 10 0.0001331 0.0001974 0.0004471 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002838 0.0003015 0.000335 0.01% Castro::do_advance_ctu() 10 0.0001525 0.0001749 0.0002254 0.01% Castro::clean_state() 62 0.0001369 0.0001705 0.0001896 0.01% Castro::do_old_sources() 10 8.085e-05 0.0001107 0.0001579 0.00% StateDataPhysBCFunct::() 41 0.0001035 0.0001156 0.0001415 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001034 0.0001122 0.0001324 0.00% Castro::apply_source_to_state() 20 4.247e-05 6.047e-05 0.000112 0.00% FabArray::ParallelCopy() 41 9.083e-05 9.908e-05 0.0001103 0.00% Castro::construct_old_source() 50 5.938e-05 7.763e-05 0.0001007 0.00% Castro::Castro() 1 5.223e-05 7.159e-05 9.366e-05 0.00% Amr::FinalizeInit() 1 3.985e-06 1.583e-05 8.9e-05 0.00% FillPatchSingleLevel 41 6.341e-05 7.051e-05 8.022e-05 0.00% Castro::do_new_sources() 10 5.116e-05 6.339e-05 6.89e-05 0.00% Amr::defBaseLevel() 1 4.447e-05 5.505e-05 6.797e-05 0.00% Castro::advance() 10 4.574e-05 5.035e-05 6.566e-05 0.00% Castro::subcycle_advance_ctu() 10 4.723e-05 5.131e-05 5.915e-05 0.00% Castro::construct_old_gravity() 10 3.618e-05 4.028e-05 4.537e-05 0.00% Castro::construct_new_gravity() 10 3.053e-05 3.55e-05 4.242e-05 0.00% Castro::expand_state() 10 2.163e-05 2.797e-05 3.42e-05 0.00% Castro::check_for_nan() 20 2.481e-05 2.613e-05 2.9e-05 0.00% Castro::computeNewDt() 9 9.618e-06 1.384e-05 2.229e-05 0.00% Castro::post_timestep() 10 1.409e-05 1.634e-05 2.1e-05 0.00% Castro::post_init() 1 1.499e-05 1.738e-05 1.95e-05 0.00% Amr::InitializeInit() 1 2.368e-06 3.416e-06 6.254e-06 0.00% Castro::computeInitialDt() 2 2.678e-06 3.5e-06 4.921e-06 0.00% Amr::init() 1 1.748e-06 2.529e-06 3.474e-06 0.00% Amr::initialInit() 1 1.512e-06 2.11e-06 2.621e-06 0.00% Other 199 0.01027 0.01284 0.01443 0.43% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.375 3.376 3.376 100.00% Amr::coarseTimeStep() 10 3.18 3.18 3.18 94.17% Amr::timeStep() 10 3.166 3.167 3.168 93.84% Castro::advance() 10 3.15 3.151 3.151 93.32% Castro::subcycle_advance_ctu() 10 3.07 3.073 3.076 91.09% Castro::do_advance_ctu() 10 3.07 3.073 3.076 91.09% Castro::construct_ctu_hydro_source() 10 2.315 2.325 2.331 69.03% Gravity::make_radial_gravity() 21 0.3067 0.3147 0.3254 9.64% AmrLevel::FillPatch() 41 0.1986 0.2089 0.22 6.51% Gravity::get_new_grav_vector() 11 0.2095 0.2103 0.2119 6.27% Castro::construct_old_gravity() 10 0.1809 0.1871 0.1971 5.84% Gravity::get_old_grav_vector() 10 0.1801 0.1864 0.1964 5.82% Castro::construct_new_gravity() 10 0.1862 0.1875 0.1884 5.58% Amr::init() 1 0.1837 0.1844 0.185 5.48% FillPatchIterator::Initialize 41 0.1667 0.1749 0.184 5.45% Castro::initialize_do_advance() 10 0.1551 0.1651 0.1723 5.10% Amr::initialInit() 1 0.1684 0.1691 0.1696 5.02% check_for_negative_density() 10 0.04403 0.07917 0.1437 4.26% Amr::InitializeInit() 1 0.05901 0.09473 0.1418 4.20% Amr::defBaseLevel() 1 0.059 0.09472 0.1418 4.20% FillPatchIterator::FillFromLevel0() 41 0.1174 0.1298 0.1374 4.07% FillPatchSingleLevel 41 0.1173 0.1297 0.1373 4.07% Castro::clean_state() 62 0.1123 0.119 0.1235 3.66% Castro::initData() 1 0.04137 0.07718 0.1234 3.65% Castro::do_old_sources() 10 0.1029 0.1091 0.1179 3.49% Castro::expand_state() 10 0.107 0.1112 0.1168 3.46% Castro::estTimeStep() 21 0.02857 0.07491 0.1128 3.34% Amr::FinalizeInit() 1 0.02686 0.07433 0.1106 3.28% FabArray::ParallelCopy() 41 0.08604 0.0983 0.1062 3.15% amrex::Copy() 193 0.06995 0.0828 0.09394 2.78% Castro::computeInitialDt() 2 0.002167 0.04966 0.08591 2.54% Castro::initialize_advance() 10 0.07179 0.07425 0.07763 2.30% FabArray::setVal() 143 0.06705 0.06994 0.07351 2.18% Castro::do_new_sources() 10 0.06004 0.06458 0.0691 2.05% Castro::computeTemp() 63 0.05867 0.06404 0.06882 2.04% FabArray::ParallelCopy_finish() 41 0.04034 0.05571 0.06707 1.99% Castro::normalize_species() 62 0.04593 0.04943 0.05676 1.68% Castro::reset_internal_energy(MultiFab) 63 0.04145 0.04579 0.04969 1.47% Castro::reset_internal_energy(Fab) 1008 0.04116 0.04549 0.04935 1.46% FabArray::ParallelCopy_nowait() 41 0.03731 0.04249 0.04561 1.35% Castro::construct_new_source() 50 0.0294 0.03103 0.03311 0.98% StateDataPhysBCFunct::() 41 0.03017 0.03131 0.03305 0.98% StateData::FillBoundary(geom) 41 0.03006 0.0312 0.03295 0.98% Gravity::interpolate_monopole_grav() 21 0.02647 0.02679 0.02724 0.81% Castro::construct_new_gravity_source() 10 0.02333 0.02473 0.02674 0.79% Castro::post_init() 1 0.02392 0.02411 0.02419 0.72% Amr::writePlotFile() 2 0.02301 0.0231 0.02324 0.69% Castro::finalize_do_advance() 10 0.01272 0.01766 0.02159 0.64% Castro::apply_source_to_state() 20 0.01219 0.01351 0.01828 0.54% FabArray::Saxpy() 20 0.01215 0.01345 0.01817 0.54% Castro::post_timestep() 10 0.0149 0.01629 0.01747 0.52% FabArray::setDomainBndry() 41 0.007893 0.01054 0.01341 0.40% VisMF::Write(FabArray) 2 0.009186 0.009824 0.0126 0.37% Castro::check_for_nan() 20 0.01057 0.01143 0.01231 0.36% MultiFab::contains_nan() 20 0.01054 0.0114 0.01228 0.36% Castro::Castro() 1 0.01002 0.01085 0.01168 0.35% Castro::construct_old_source() 50 0.00999 0.01044 0.01166 0.35% Castro::construct_old_gravity_source() 10 0.009931 0.01036 0.01156 0.34% Castro::computeNewDt() 9 0.008621 0.008665 0.008707 0.26% Castro::initMFs() 1 0.006486 0.006962 0.007773 0.23% Castro::enforce_min_density() 62 0.005889 0.006249 0.006527 0.19% Other 199 0.02036 0.02446 0.02724 0.81% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 30 B 35 B 42 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8662 KiB 8670 KiB 8672 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6740 KiB 6745 KiB 6747 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7134 KiB 7141 KiB 7143 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4542 KiB 4548 KiB 4551 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 220 KiB 231 KiB 243 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 16 KiB 17 KiB 21 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2796 KiB 2799 KiB 2800 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 231 KiB 237 KiB 245 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 39 KiB 43 KiB 46 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 79 KiB 80 KiB 80 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 68 KiB 70 KiB 74 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.06-22-g1d307c2c661a-dirty) finalized