Initializing AMReX (25.06-22-g1d307c2c661a-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.06-22-g1d307c2c661a-dirty) initialized Starting run at 05:17:34 UTC on 2025-08-19. Successfully read inputs file ... Castro git describe: 25.08-12-gf8a308cc1 AMReX git describe: 25.06-22-g1d307c2c6-dirty Microphysics git describe: 25.08-4-gd418e231 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014517849 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.339231768 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.328889122 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.359645716 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.322248418 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.363944487 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.302737716 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.298322711 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.299581619 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.2986455 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.300495334 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.00757068 seconds Ending run at 05:17:38 UTC on 2025-08-19. Run time = 3.408043694 Run time without initialization = 3.22658783 Average number of zones advanced per microsecond: 0.812 Average number of zones advanced per microsecond per rank: 0.102 TinyProfiler total time across processes [min...avg...max]: 3.4070 ... 3.4076 ... 3.4081 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1266 2.2269 2.3100 67.78% Gravity::make_radial_gravity() 21 0.2925 0.3101 0.327 9.59% check_for_negative_density() 10 0.02873 0.1139 0.218 6.40% Castro::initData() 1 0.04234 0.07397 0.1184 3.47% Castro::estTimeStep() 21 0.02453 0.07294 0.1042 3.06% FabArray::ParallelCopy_finish() 41 0.04452 0.05873 0.09521 2.79% amrex::Copy() 193 0.06257 0.08006 0.09153 2.69% FabArray::setVal() 143 0.05648 0.06708 0.07487 2.20% Castro::normalize_species() 62 0.04472 0.04696 0.05551 1.63% Castro::reset_internal_energy(Fab) 1008 0.04149 0.04509 0.04684 1.37% FabArray::ParallelCopy_nowait() 41 0.03425 0.04047 0.04215 1.24% FillPatchIterator::Initialize 41 0.02663 0.03411 0.04027 1.18% StateData::FillBoundary(geom) 41 0.0277 0.03114 0.03453 1.01% Gravity::interpolate_monopole_grav() 21 0.02648 0.02699 0.02838 0.83% Castro::construct_new_gravity_source() 10 0.02199 0.02368 0.02562 0.75% Castro::computeTemp() 63 0.01723 0.01794 0.01903 0.56% Castro::initialize_do_advance() 10 0.01147 0.01542 0.01656 0.49% MultiFab::contains_nan() 20 0.0106 0.01251 0.01456 0.43% Castro::initialize_advance() 10 0.005286 0.01057 0.01356 0.40% FabArray::Saxpy() 20 0.01038 0.012 0.01299 0.38% VisMF::Write(FabArray) 2 0.009102 0.009762 0.01297 0.38% FabArray::setDomainBndry() 41 0.006868 0.01048 0.0126 0.37% Amr::writePlotFile() 2 0.00756 0.009645 0.01011 0.30% Castro::construct_old_gravity_source() 10 0.006361 0.008772 0.009271 0.27% Castro::initMFs() 1 0.006437 0.007043 0.00783 0.23% Castro::construct_new_source() 50 0.00554 0.005997 0.006286 0.18% main() 1 0.003462 0.003994 0.004637 0.14% Gravity::get_new_grav_vector() 11 0.002975 0.003424 0.003789 0.11% Amr::coarseTimeStep() 10 0.002008 0.002853 0.003418 0.10% Gravity::get_old_grav_vector() 10 0.001467 0.001917 0.002241 0.07% Castro::finalize_do_advance() 10 0.0005441 0.001174 0.0013 0.04% AmrLevel::FillPatch() 41 0.0007493 0.001089 0.001183 0.03% Amr::timeStep() 10 0.0001354 0.0001848 0.0003994 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002723 0.0002827 0.0002905 0.01% Castro::do_advance_ctu() 10 0.0001443 0.0001732 0.0001967 0.01% Castro::clean_state() 62 0.000141 0.0001538 0.0001688 0.00% StateDataPhysBCFunct::() 41 9.435e-05 0.0001188 0.0001424 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001007 0.0001102 0.000119 0.00% FabArray::ParallelCopy() 41 8.558e-05 9.536e-05 0.0001092 0.00% Castro::do_old_sources() 10 7.849e-05 8.851e-05 9.534e-05 0.00% Castro::Castro() 1 5.436e-05 6.729e-05 8.045e-05 0.00% FillPatchSingleLevel 41 6.437e-05 7.002e-05 7.855e-05 0.00% Castro::construct_old_source() 50 5.208e-05 6.348e-05 7.132e-05 0.00% Castro::do_new_sources() 10 5.289e-05 6.003e-05 6.869e-05 0.00% Castro::apply_source_to_state() 20 4.547e-05 5.367e-05 6.435e-05 0.00% Amr::defBaseLevel() 1 4.197e-05 4.919e-05 6.295e-05 0.00% Amr::FinalizeInit() 1 3.131e-06 1.135e-05 6.228e-05 0.00% Castro::construct_old_gravity() 10 3.756e-05 4.66e-05 5.785e-05 0.00% Castro::subcycle_advance_ctu() 10 4.157e-05 4.666e-05 5.158e-05 0.00% Castro::advance() 10 3.848e-05 4.439e-05 4.968e-05 0.00% Castro::construct_new_gravity() 10 3.137e-05 3.713e-05 4.476e-05 0.00% Castro::check_for_nan() 20 2.303e-05 2.508e-05 2.686e-05 0.00% Castro::expand_state() 10 2.103e-05 2.299e-05 2.488e-05 0.00% Castro::post_timestep() 10 1.341e-05 1.714e-05 1.969e-05 0.00% Castro::post_init() 1 1.397e-05 1.608e-05 1.841e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.053e-05 1.258e-05 1.54e-05 0.00% Castro::computeNewDt() 9 9.135e-06 9.956e-06 1.191e-05 0.00% Amr::InitializeInit() 1 2.844e-06 3.712e-06 6.484e-06 0.00% Amr::initialInit() 1 1.726e-06 2.497e-06 5.247e-06 0.00% Castro::computeInitialDt() 2 2.963e-06 3.532e-06 3.978e-06 0.00% Amr::init() 1 1.995e-06 2.502e-06 2.806e-06 0.00% Other 260 0.01522 0.01902 0.02104 0.62% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.407 3.408 3.408 100.00% Amr::coarseTimeStep() 10 3.214 3.214 3.214 94.32% Amr::timeStep() 10 3.201 3.202 3.202 93.97% Castro::advance() 10 3.185 3.186 3.186 93.48% Castro::subcycle_advance_ctu() 10 3.108 3.114 3.128 91.79% Castro::do_advance_ctu() 10 3.108 3.114 3.128 91.79% Castro::construct_ctu_hydro_source() 10 2.36 2.362 2.367 69.46% Gravity::make_radial_gravity() 21 0.3077 0.3258 0.3399 9.97% check_for_negative_density() 10 0.02873 0.1139 0.218 6.40% AmrLevel::FillPatch() 41 0.2 0.2098 0.2169 6.37% Gravity::get_new_grav_vector() 11 0.2081 0.2107 0.2118 6.21% Castro::construct_old_gravity() 10 0.1818 0.1972 0.2111 6.20% Gravity::get_old_grav_vector() 10 0.1807 0.1964 0.2101 6.17% FillPatchIterator::Initialize 41 0.1626 0.1754 0.1912 5.61% Castro::construct_new_gravity() 10 0.1856 0.1879 0.1891 5.55% Castro::initialize_do_advance() 10 0.1708 0.1764 0.1868 5.48% Amr::init() 1 0.1807 0.1813 0.182 5.34% Amr::initialInit() 1 0.166 0.167 0.1678 4.92% FillPatchIterator::FillFromLevel0() 41 0.1171 0.1308 0.1577 4.63% FillPatchSingleLevel 41 0.117 0.1307 0.1576 4.62% Amr::InitializeInit() 1 0.06318 0.09544 0.1404 4.12% Amr::defBaseLevel() 1 0.06318 0.09544 0.1404 4.12% Castro::expand_state() 10 0.1182 0.1234 0.1313 3.85% FabArray::ParallelCopy() 41 0.08688 0.09939 0.1297 3.80% Castro::initData() 1 0.04628 0.07773 0.122 3.58% Castro::clean_state() 62 0.1129 0.1156 0.1197 3.51% Amr::FinalizeInit() 1 0.02648 0.07152 0.1045 3.07% Castro::estTimeStep() 21 0.02453 0.07294 0.1042 3.06% Castro::do_old_sources() 10 0.09051 0.09445 0.09752 2.86% FabArray::ParallelCopy_finish() 41 0.04452 0.05873 0.09521 2.79% amrex::Copy() 193 0.06257 0.08006 0.09153 2.69% Castro::computeInitialDt() 2 0.002084 0.04725 0.08021 2.35% FabArray::setVal() 143 0.05648 0.06708 0.07487 2.20% Castro::initialize_advance() 10 0.05325 0.06821 0.07387 2.17% Castro::do_new_sources() 10 0.05828 0.0625 0.06669 1.96% Castro::computeTemp() 63 0.05901 0.06331 0.06616 1.94% Castro::normalize_species() 62 0.04472 0.04696 0.05551 1.63% Castro::reset_internal_energy(MultiFab) 63 0.04178 0.04538 0.04713 1.38% Castro::reset_internal_energy(Fab) 1008 0.04149 0.04509 0.04684 1.37% FabArray::ParallelCopy_nowait() 41 0.03436 0.04057 0.04226 1.24% StateDataPhysBCFunct::() 41 0.02782 0.03126 0.03464 1.02% StateData::FillBoundary(geom) 41 0.0277 0.03114 0.03453 1.01% Castro::construct_new_source() 50 0.02753 0.02968 0.03176 0.93% Gravity::interpolate_monopole_grav() 21 0.02648 0.02699 0.02838 0.83% Castro::construct_new_gravity_source() 10 0.02199 0.02368 0.02562 0.75% Castro::post_init() 1 0.0233 0.0237 0.02387 0.70% Castro::finalize_do_advance() 10 0.01237 0.01793 0.02247 0.66% Amr::writePlotFile() 2 0.02186 0.02198 0.02235 0.66% Castro::post_timestep() 10 0.01533 0.0159 0.01715 0.50% Castro::check_for_nan() 20 0.01063 0.01254 0.01459 0.43% MultiFab::contains_nan() 20 0.0106 0.01251 0.01456 0.43% Castro::apply_source_to_state() 20 0.01042 0.01206 0.01306 0.38% FabArray::Saxpy() 20 0.01038 0.012 0.01299 0.38% VisMF::Write(FabArray) 2 0.009102 0.009762 0.01297 0.38% FabArray::setDomainBndry() 41 0.006868 0.01048 0.0126 0.37% Castro::Castro() 1 0.00989 0.01089 0.0118 0.35% Castro::construct_old_source() 50 0.006413 0.008835 0.009342 0.27% Castro::construct_old_gravity_source() 10 0.006361 0.008772 0.009271 0.27% Castro::computeNewDt() 9 0.008912 0.008945 0.008967 0.26% Castro::initMFs() 1 0.006437 0.007043 0.00783 0.23% AmrLevel::AmrLevel(dm) 1 0.005606 0.006121 0.006575 0.19% Other 260 0.01988 0.02455 0.02752 0.81% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 33 B 37 B 40 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 13 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8658 KiB 8669 KiB 8672 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6752 KiB 6755 KiB 6757 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7131 KiB 7139 KiB 7142 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4556 KiB 4564 KiB 4582 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 225 KiB 235 KiB 245 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 15 KiB 16 KiB 19 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2800 KiB 2803 KiB 2804 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 230 KiB 243 KiB 254 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 40 KiB 45 KiB 61 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 78 KiB 79 KiB 79 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 68 KiB 74 KiB 79 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.06-22-g1d307c2c661a-dirty) finalized