Initializing AMReX (25.06-22-g1d307c2c661a-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.06-22-g1d307c2c661a-dirty) initialized Starting run at 05:17:39 UTC on 2025-08-20. Successfully read inputs file ... Castro git describe: 25.08-12-gf8a308cc1 AMReX git describe: 25.06-22-g1d307c2c6-dirty Microphysics git describe: 25.08-5-g5e63b7a9 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015372517 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.346042789 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.344164716 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.331395367 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.32965059 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.398641446 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.312964888 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.306866993 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.305720354 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.307935348 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.305279205 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.008597484 seconds Ending run at 05:17:43 UTC on 2025-08-20. Run time = 3.468282975 Run time without initialization = 3.303164318 Average number of zones advanced per microsecond: 0.794 Average number of zones advanced per microsecond per rank: 0.099 TinyProfiler total time across processes [min...avg...max]: 3.4663 ... 3.4676 ... 3.4685 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1963 2.2536 2.3538 67.86% Gravity::make_radial_gravity() 21 0.2945 0.313 0.3334 9.61% check_for_negative_density() 10 0.01945 0.1255 0.1857 5.35% Castro::initData() 1 0.03705 0.07017 0.1009 2.91% amrex::Copy() 193 0.07381 0.08588 0.09703 2.80% Castro::estTimeStep() 21 0.02607 0.05983 0.0946 2.73% FabArray::ParallelCopy_finish() 41 0.05456 0.06797 0.08952 2.58% FabArray::setVal() 143 0.06943 0.07326 0.08027 2.31% Castro::reset_internal_energy(Fab) 1008 0.04318 0.04687 0.05346 1.54% Castro::normalize_species() 62 0.04516 0.04635 0.04728 1.36% FabArray::ParallelCopy_nowait() 41 0.03584 0.04195 0.0461 1.33% FillPatchIterator::Initialize 41 0.0272 0.0342 0.03791 1.09% StateData::FillBoundary(geom) 41 0.02829 0.03306 0.03779 1.09% Gravity::interpolate_monopole_grav() 21 0.02674 0.02706 0.02794 0.81% Castro::construct_new_gravity_source() 10 0.02372 0.02489 0.02751 0.79% Castro::computeTemp() 63 0.01767 0.01863 0.02069 0.60% Castro::initialize_do_advance() 10 0.01535 0.01725 0.01836 0.53% MultiFab::contains_nan() 20 0.01128 0.01243 0.01488 0.43% Castro::initialize_advance() 10 0.01041 0.01234 0.01461 0.42% FabArray::setDomainBndry() 41 0.006452 0.01138 0.01444 0.42% FabArray::Saxpy() 20 0.0109 0.01254 0.01378 0.40% VisMF::Write(FabArray) 2 0.009442 0.01011 0.01368 0.39% Amr::writePlotFile() 2 0.007856 0.01078 0.01164 0.34% Castro::construct_old_gravity_source() 10 0.008027 0.009201 0.009967 0.29% Gravity::get_old_grav_vector() 10 0.001681 0.003182 0.009536 0.27% Castro::initMFs() 1 0.006589 0.006724 0.006841 0.20% Castro::construct_new_source() 50 0.005896 0.006219 0.006417 0.19% main() 1 0.003227 0.004674 0.005467 0.16% Gravity::get_new_grav_vector() 11 0.002849 0.003747 0.004549 0.13% Amr::coarseTimeStep() 10 0.0008722 0.001606 0.002487 0.07% Castro::finalize_do_advance() 10 0.001277 0.001421 0.001842 0.05% AmrLevel::FillPatch() 41 0.0009054 0.001076 0.001261 0.04% Amr::timeStep() 10 0.0001483 0.0001994 0.0004551 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002778 0.0002976 0.0003338 0.01% Castro::do_advance_ctu() 10 0.000156 0.000188 0.0002255 0.01% Castro::clean_state() 62 0.0001452 0.0001631 0.0001779 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001106 0.0001193 0.0001333 0.00% StateDataPhysBCFunct::() 41 0.000106 0.0001145 0.0001198 0.00% Castro::Castro() 1 7.987e-05 9.556e-05 0.0001144 0.00% Castro::do_old_sources() 10 8.759e-05 9.855e-05 0.0001131 0.00% FabArray::ParallelCopy() 41 9.083e-05 9.95e-05 0.0001131 0.00% Amr::FinalizeInit() 1 3.678e-06 1.613e-05 9.994e-05 0.00% Castro::construct_old_source() 50 6.073e-05 7.143e-05 8.118e-05 0.00% Castro::do_new_sources() 10 5.763e-05 6.822e-05 8.041e-05 0.00% FillPatchSingleLevel 41 7.21e-05 7.545e-05 8.02e-05 0.00% Castro::advance() 10 4.25e-05 5.528e-05 7.374e-05 0.00% Castro::apply_source_to_state() 20 4.701e-05 5.698e-05 6.921e-05 0.00% Castro::construct_old_gravity() 10 4e-05 4.847e-05 6.29e-05 0.00% Castro::subcycle_advance_ctu() 10 4.199e-05 5.225e-05 5.892e-05 0.00% Castro::construct_new_gravity() 10 3.349e-05 3.872e-05 5.715e-05 0.00% Amr::defBaseLevel() 1 4.168e-05 4.592e-05 5.236e-05 0.00% Castro::check_for_nan() 20 2.157e-05 2.828e-05 3.61e-05 0.00% Castro::expand_state() 10 2.225e-05 2.416e-05 2.843e-05 0.00% Castro::post_init() 1 1.607e-05 1.859e-05 2.331e-05 0.00% Castro::post_timestep() 10 1.473e-05 1.698e-05 2.033e-05 0.00% Castro::computeNewDt() 9 9.105e-06 1.093e-05 1.758e-05 0.00% Amr::InitializeInit() 1 2.452e-06 4.097e-06 1.146e-05 0.00% Castro::computeInitialDt() 2 3.077e-06 3.773e-06 4.37e-06 0.00% Amr::init() 1 2.002e-06 2.832e-06 3.793e-06 0.00% Amr::initialInit() 1 1.655e-06 1.962e-06 2.349e-06 0.00% Other 261 0.01651 0.01861 0.01973 0.57% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.466 3.468 3.469 100.00% Amr::coarseTimeStep() 10 3.289 3.289 3.289 94.83% Amr::timeStep() 10 3.276 3.277 3.278 94.51% Castro::advance() 10 3.261 3.261 3.262 94.03% Castro::subcycle_advance_ctu() 10 3.177 3.184 3.19 91.98% Castro::do_advance_ctu() 10 3.176 3.184 3.19 91.97% Castro::construct_ctu_hydro_source() 10 2.396 2.401 2.406 69.35% Gravity::make_radial_gravity() 21 0.3115 0.3302 0.347 10.00% AmrLevel::FillPatch() 41 0.2065 0.2241 0.2387 6.88% Gravity::get_new_grav_vector() 11 0.2138 0.2155 0.2168 6.25% Castro::construct_old_gravity() 10 0.187 0.2022 0.2159 6.22% Gravity::get_old_grav_vector() 10 0.1861 0.2015 0.2152 6.20% FillPatchIterator::Initialize 41 0.18 0.1891 0.2021 5.83% Castro::initialize_do_advance() 10 0.1688 0.1817 0.194 5.59% Castro::construct_new_gravity() 10 0.1911 0.1923 0.1931 5.57% check_for_negative_density() 10 0.01945 0.1255 0.1857 5.35% Amr::init() 1 0.1644 0.1648 0.165 4.76% FillPatchIterator::FillFromLevel0() 41 0.1353 0.1435 0.1549 4.47% FillPatchSingleLevel 41 0.1352 0.1434 0.1548 4.46% Amr::initialInit() 1 0.149 0.1495 0.1498 4.32% Castro::expand_state() 10 0.1155 0.1244 0.1344 3.87% FabArray::ParallelCopy() 41 0.1008 0.1101 0.1256 3.62% Castro::clean_state() 62 0.1128 0.1177 0.1251 3.61% Amr::InitializeInit() 1 0.05829 0.09168 0.1227 3.54% Amr::defBaseLevel() 1 0.05829 0.09168 0.1227 3.54% Castro::do_old_sources() 10 0.09905 0.1051 0.1107 3.19% Castro::initData() 1 0.0409 0.07415 0.105 3.03% amrex::Copy() 193 0.07381 0.08588 0.09703 2.80% Castro::estTimeStep() 21 0.02607 0.05983 0.0946 2.73% Amr::FinalizeInit() 1 0.02705 0.05783 0.09127 2.63% FabArray::ParallelCopy_finish() 41 0.05456 0.06797 0.08952 2.58% Castro::initialize_advance() 10 0.06772 0.07375 0.08141 2.35% FabArray::setVal() 143 0.06943 0.07326 0.08027 2.31% Castro::computeTemp() 63 0.06112 0.0658 0.07448 2.15% Castro::do_new_sources() 10 0.0633 0.06526 0.07055 2.03% Castro::computeInitialDt() 2 0.002684 0.03349 0.0668 1.93% Castro::reset_internal_energy(MultiFab) 63 0.04345 0.04717 0.05379 1.55% Castro::reset_internal_energy(Fab) 1008 0.04318 0.04687 0.05346 1.54% Castro::normalize_species() 62 0.04516 0.04635 0.04728 1.36% FabArray::ParallelCopy_nowait() 41 0.03596 0.04206 0.04619 1.33% StateDataPhysBCFunct::() 41 0.02841 0.03318 0.03791 1.09% StateData::FillBoundary(geom) 41 0.02829 0.03306 0.03779 1.09% Castro::construct_new_source() 50 0.02983 0.03111 0.03392 0.98% Gravity::interpolate_monopole_grav() 21 0.02674 0.02706 0.02794 0.81% Castro::construct_new_gravity_source() 10 0.02372 0.02489 0.02751 0.79% Castro::post_init() 1 0.02391 0.02436 0.02456 0.71% Amr::writePlotFile() 2 0.02378 0.02395 0.02423 0.70% Castro::finalize_do_advance() 10 0.01232 0.0191 0.02149 0.62% Castro::post_timestep() 10 0.01514 0.01575 0.01626 0.47% Castro::check_for_nan() 20 0.0113 0.01245 0.01492 0.43% MultiFab::contains_nan() 20 0.01128 0.01243 0.01488 0.43% FabArray::setDomainBndry() 41 0.006452 0.01138 0.01444 0.42% Castro::apply_source_to_state() 20 0.01096 0.0126 0.01384 0.40% FabArray::Saxpy() 20 0.0109 0.01254 0.01378 0.40% VisMF::Write(FabArray) 2 0.009442 0.01011 0.01368 0.39% Castro::Castro() 1 0.01136 0.01148 0.01178 0.34% Castro::construct_old_source() 50 0.008088 0.009273 0.01005 0.29% Castro::construct_old_gravity_source() 10 0.008027 0.009201 0.009967 0.29% Castro::computeNewDt() 9 0.008669 0.008677 0.008689 0.25% Castro::initMFs() 1 0.006589 0.006724 0.006841 0.20% Other 261 0.02665 0.02952 0.03122 0.90% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 29 B 35 B 60 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 13 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8660 KiB 8670 KiB 8672 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6786 KiB 6793 KiB 6795 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7130 KiB 7139 KiB 7143 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4576 KiB 4586 KiB 4590 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 225 KiB 244 KiB 261 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 16 KiB 17 KiB 21 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2817 KiB 2820 KiB 2821 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 228 KiB 242 KiB 254 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 43 KiB 48 KiB 54 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 79 KiB 79 KiB 80 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 68 KiB 74 KiB 79 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.06-22-g1d307c2c661a-dirty) finalized