Initializing AMReX (25.06-22-g1d307c2c661a-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.06-22-g1d307c2c661a-dirty) initialized Starting run at 05:24:12 UTC on 2025-08-22. Successfully read inputs file ... Castro git describe: 25.08-15-gbe8cc1969 AMReX git describe: 25.06-22-g1d307c2c6-dirty Microphysics git describe: 25.08-5-g5e63b7a9 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014455792 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.350237467 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.3349048 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.314556723 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.312953776 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.357021444 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.306241121 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.297289023 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.29718776 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.297420847 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.297508227 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007605216 seconds Ending run at 05:24:16 UTC on 2025-08-22. Run time = 3.350482849 Run time without initialization = 3.178049174 Average number of zones advanced per microsecond: 0.825 Average number of zones advanced per microsecond per rank: 0.103 TinyProfiler total time across processes [min...avg...max]: 3.3495 ... 3.3500 ... 3.3505 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1592 2.2324 2.2872 68.26% Gravity::make_radial_gravity() 21 0.2905 0.2989 0.317 9.46% check_for_negative_density() 10 0.0318 0.08885 0.1645 4.91% Castro::initData() 1 0.037 0.07315 0.1088 3.25% Castro::estTimeStep() 21 0.02331 0.06465 0.1045 3.12% FabArray::ParallelCopy_finish() 41 0.03738 0.0462 0.08686 2.59% amrex::Copy() 193 0.06339 0.07815 0.08566 2.56% FabArray::setVal() 143 0.05242 0.06516 0.07131 2.13% Castro::reset_internal_energy(Fab) 1008 0.04443 0.04613 0.04812 1.44% Castro::normalize_species() 62 0.0445 0.04513 0.04626 1.38% FabArray::ParallelCopy_nowait() 41 0.03557 0.04117 0.04265 1.27% FillPatchIterator::Initialize 41 0.02773 0.0321 0.03456 1.03% StateData::FillBoundary(geom) 41 0.02755 0.03085 0.0323 0.96% Castro::construct_new_gravity_source() 10 0.02325 0.02474 0.02692 0.80% Gravity::interpolate_monopole_grav() 21 0.02624 0.02656 0.02682 0.80% Castro::computeTemp() 63 0.01786 0.01829 0.01888 0.56% Castro::initialize_do_advance() 10 0.01156 0.01616 0.01769 0.53% Castro::initialize_advance() 10 0.005285 0.01076 0.01413 0.42% FabArray::Saxpy() 20 0.01065 0.01255 0.01385 0.41% VisMF::Write(FabArray) 2 0.009034 0.009734 0.01296 0.39% MultiFab::contains_nan() 20 0.01066 0.01139 0.01269 0.38% FabArray::setDomainBndry() 41 0.007276 0.01022 0.01225 0.37% Amr::writePlotFile() 2 0.007423 0.009633 0.01032 0.31% Castro::construct_old_gravity_source() 10 0.00675 0.009537 0.01028 0.31% Castro::initMFs() 1 0.006398 0.006997 0.008061 0.24% Castro::enforce_min_density() 62 0.00602 0.006267 0.006627 0.20% Castro::construct_new_source() 50 0.00551 0.005974 0.006257 0.19% main() 1 0.003252 0.004108 0.004548 0.14% Gravity::get_new_grav_vector() 11 0.002781 0.003462 0.003789 0.11% Amr::coarseTimeStep() 10 0.0008034 0.001916 0.002569 0.08% Gravity::get_old_grav_vector() 10 0.001426 0.002007 0.002474 0.07% Castro::finalize_do_advance() 10 0.0005423 0.001129 0.001417 0.04% AmrLevel::FillPatch() 41 0.0007788 0.0009813 0.001072 0.03% Amr::timeStep() 10 0.0001436 0.0001876 0.0003996 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002699 0.0002875 0.0003157 0.01% Castro::do_advance_ctu() 10 0.0001471 0.0001721 0.0002035 0.01% Castro::clean_state() 62 0.000148 0.0001574 0.0001676 0.01% StateDataPhysBCFunct::() 41 9.99e-05 0.0001188 0.0001487 0.00% FillPatchIterator::FillFromLevel0() 41 9.038e-05 0.000102 0.0001142 0.00% Castro::do_old_sources() 10 6.765e-05 9.264e-05 0.0001123 0.00% FabArray::ParallelCopy() 41 8.358e-05 9.316e-05 0.000104 0.00% Amr::FinalizeInit() 1 3.456e-06 1.523e-05 9.363e-05 0.00% Castro::Castro() 1 5.064e-05 6.399e-05 8.165e-05 0.00% Castro::construct_old_source() 50 4.133e-05 6.87e-05 8.161e-05 0.00% Castro::do_new_sources() 10 5.899e-05 6.624e-05 7.436e-05 0.00% FillPatchSingleLevel 41 6.211e-05 6.856e-05 7.38e-05 0.00% Castro::apply_source_to_state() 20 4.251e-05 5.402e-05 6.812e-05 0.00% Castro::advance() 10 3.581e-05 4.735e-05 6.196e-05 0.00% Amr::defBaseLevel() 1 4.531e-05 5.091e-05 5.988e-05 0.00% Castro::subcycle_advance_ctu() 10 4.262e-05 4.985e-05 5.706e-05 0.00% Castro::construct_old_gravity() 10 3.556e-05 4.115e-05 4.867e-05 0.00% Castro::construct_new_gravity() 10 2.911e-05 3.763e-05 4.438e-05 0.00% Castro::check_for_nan() 20 2.22e-05 2.689e-05 4.1e-05 0.00% Castro::expand_state() 10 2.063e-05 2.382e-05 3.036e-05 0.00% Castro::post_timestep() 10 1.465e-05 1.675e-05 2.021e-05 0.00% Castro::post_init() 1 1.342e-05 1.72e-05 2.019e-05 0.00% Castro::computeNewDt() 9 9.073e-06 9.431e-06 1.023e-05 0.00% Amr::InitializeInit() 1 2.38e-06 3.517e-06 6.824e-06 0.00% Amr::init() 1 2.146e-06 2.867e-06 5.055e-06 0.00% Castro::computeInitialDt() 2 2.872e-06 3.294e-06 3.823e-06 0.00% Amr::initialInit() 1 1.523e-06 2.172e-06 2.722e-06 0.00% Other 199 0.009262 0.0128 0.01475 0.44% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.349 3.35 3.35 100.00% Amr::coarseTimeStep() 10 3.166 3.166 3.166 94.49% Amr::timeStep() 10 3.154 3.154 3.156 94.18% Castro::advance() 10 3.138 3.138 3.139 93.68% Castro::subcycle_advance_ctu() 10 3.062 3.067 3.083 92.01% Castro::do_advance_ctu() 10 3.062 3.067 3.083 92.01% Castro::construct_ctu_hydro_source() 10 2.34 2.342 2.344 69.97% Gravity::make_radial_gravity() 21 0.3067 0.3151 0.33 9.85% Gravity::get_new_grav_vector() 11 0.2089 0.2094 0.2103 6.28% AmrLevel::FillPatch() 41 0.1815 0.1929 0.2094 6.25% Castro::construct_old_gravity() 10 0.1792 0.1852 0.1977 5.90% Gravity::get_old_grav_vector() 10 0.1784 0.1845 0.1971 5.88% Castro::construct_new_gravity() 10 0.1863 0.1872 0.1879 5.61% FillPatchIterator::Initialize 41 0.1504 0.161 0.1855 5.54% Amr::init() 1 0.1712 0.172 0.1725 5.15% Castro::initialize_do_advance() 10 0.1574 0.1622 0.1657 4.94% check_for_negative_density() 10 0.0318 0.08885 0.1645 4.91% Amr::initialInit() 1 0.1566 0.1577 0.1583 4.72% FillPatchIterator::FillFromLevel0() 41 0.1106 0.1187 0.1505 4.49% FillPatchSingleLevel 41 0.1104 0.1186 0.1504 4.49% Amr::InitializeInit() 1 0.05728 0.09423 0.1311 3.91% Amr::defBaseLevel() 1 0.05728 0.09423 0.1311 3.91% FabArray::ParallelCopy() 41 0.07893 0.08757 0.1226 3.66% Castro::clean_state() 62 0.113 0.1154 0.1195 3.57% Castro::expand_state() 10 0.1031 0.1093 0.119 3.55% Castro::initData() 1 0.04048 0.07691 0.1128 3.37% Castro::estTimeStep() 21 0.02331 0.06465 0.1045 3.12% Amr::FinalizeInit() 1 0.02615 0.06344 0.1001 2.99% Castro::do_old_sources() 10 0.08981 0.09244 0.09429 2.81% FabArray::ParallelCopy_finish() 41 0.03738 0.0462 0.08686 2.59% amrex::Copy() 193 0.06339 0.07815 0.08566 2.56% Castro::computeInitialDt() 2 0.002086 0.03941 0.07605 2.27% Castro::initialize_advance() 10 0.05166 0.06824 0.07323 2.19% FabArray::setVal() 143 0.05242 0.06516 0.07131 2.13% Castro::do_new_sources() 10 0.05919 0.0638 0.06939 2.07% Castro::computeTemp() 63 0.06256 0.06471 0.06729 2.01% Castro::reset_internal_energy(MultiFab) 63 0.0447 0.04642 0.04841 1.44% Castro::reset_internal_energy(Fab) 1008 0.04443 0.04613 0.04812 1.44% Castro::normalize_species() 62 0.0445 0.04513 0.04626 1.38% FabArray::ParallelCopy_nowait() 41 0.0357 0.04128 0.04276 1.28% Castro::construct_new_source() 50 0.02922 0.03072 0.03316 0.99% StateDataPhysBCFunct::() 41 0.02765 0.03097 0.0324 0.97% StateData::FillBoundary(geom) 41 0.02755 0.03085 0.0323 0.96% Castro::construct_new_gravity_source() 10 0.02325 0.02474 0.02692 0.80% Gravity::interpolate_monopole_grav() 21 0.02624 0.02656 0.02682 0.80% Castro::post_init() 1 0.02304 0.02347 0.02368 0.71% Amr::writePlotFile() 2 0.0219 0.02202 0.02232 0.67% Castro::finalize_do_advance() 10 0.01168 0.01783 0.02187 0.65% Castro::post_timestep() 10 0.01546 0.0159 0.01661 0.50% Castro::apply_source_to_state() 20 0.0107 0.01261 0.01391 0.42% FabArray::Saxpy() 20 0.01065 0.01255 0.01385 0.41% VisMF::Write(FabArray) 2 0.009034 0.009734 0.01296 0.39% Castro::check_for_nan() 20 0.01068 0.01142 0.01272 0.38% MultiFab::contains_nan() 20 0.01066 0.01139 0.01269 0.38% FabArray::setDomainBndry() 41 0.007276 0.01022 0.01225 0.37% Castro::Castro() 1 0.01003 0.01068 0.0115 0.34% Castro::construct_old_source() 50 0.006791 0.009606 0.01035 0.31% Castro::construct_old_gravity_source() 10 0.00675 0.009537 0.01028 0.31% Castro::computeNewDt() 9 0.008541 0.008553 0.008562 0.26% Castro::initMFs() 1 0.006398 0.006997 0.008061 0.24% Castro::enforce_min_density() 62 0.00602 0.006267 0.006627 0.20% Other 199 0.01913 0.02418 0.02738 0.82% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 33 B 37 B 50 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 15 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8658 KiB 8669 KiB 8672 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6766 KiB 6769 KiB 6770 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7132 KiB 7139 KiB 7142 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4566 KiB 4573 KiB 4593 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 205 KiB 218 KiB 238 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 16 KiB 16 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2806 KiB 2809 KiB 2810 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 233 KiB 239 KiB 251 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 36 KiB 40 KiB 57 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 80 KiB 80 KiB 80 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 68 KiB 70 KiB 75 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.06-22-g1d307c2c661a-dirty) finalized