Initializing AMReX (25.06-22-g1d307c2c661a-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.06-22-g1d307c2c661a-dirty) initialized Starting run at 05:17:43 UTC on 2025-08-25. Successfully read inputs file ... Castro git describe: 25.08-15-gbe8cc1969 AMReX git describe: 25.06-22-g1d307c2c6-dirty Microphysics git describe: 25.08-5-g5e63b7a9 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014483365 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.348859837 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.328909607 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.34201686 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.318081214 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.360192892 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.303438673 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.297907201 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.299448339 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.298896951 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.29922976 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.008081911 seconds Ending run at 05:17:47 UTC on 2025-08-25. Run time = 3.393044215 Run time without initialization = 3.20970881 Average number of zones advanced per microsecond: 0.817 Average number of zones advanced per microsecond per rank: 0.102 TinyProfiler total time across processes [min...avg...max]: 3.3921 ... 3.3927 ... 3.3931 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2188 2.2464 2.2935 67.59% Gravity::make_radial_gravity() 21 0.2893 0.3049 0.3341 9.85% Castro::initData() 1 0.03759 0.07502 0.1195 3.52% check_for_negative_density() 10 0.03674 0.08668 0.1158 3.41% Castro::estTimeStep() 21 0.02998 0.07044 0.1096 3.23% amrex::Copy() 193 0.0654 0.08634 0.1041 3.07% FabArray::ParallelCopy_finish() 41 0.03879 0.05097 0.0842 2.48% FabArray::setVal() 143 0.05552 0.06662 0.07339 2.16% Castro::reset_internal_energy(Fab) 1008 0.04348 0.04577 0.04993 1.47% Castro::normalize_species() 62 0.04526 0.04588 0.04669 1.38% FabArray::ParallelCopy_nowait() 41 0.0344 0.04106 0.04299 1.27% StateData::FillBoundary(geom) 41 0.02844 0.03216 0.03786 1.12% FillPatchIterator::Initialize 41 0.02797 0.0332 0.03525 1.04% Gravity::interpolate_monopole_grav() 21 0.02649 0.0269 0.02735 0.81% Castro::construct_new_gravity_source() 10 0.02237 0.02356 0.02486 0.73% Castro::computeTemp() 63 0.01754 0.01865 0.02243 0.66% Castro::initialize_do_advance() 10 0.01147 0.01603 0.01741 0.51% MultiFab::contains_nan() 20 0.01065 0.01242 0.01478 0.44% Castro::initialize_advance() 10 0.005266 0.01051 0.01368 0.40% FabArray::setDomainBndry() 41 0.006935 0.01083 0.01296 0.38% FabArray::Saxpy() 20 0.01053 0.01211 0.01278 0.38% Amr::writePlotFile() 2 0.007904 0.01052 0.01253 0.37% VisMF::Write(FabArray) 2 0.008893 0.009727 0.01216 0.36% Castro::construct_old_gravity_source() 10 0.006214 0.008624 0.009138 0.27% Castro::initMFs() 1 0.006569 0.00721 0.008275 0.24% Castro::construct_new_source() 50 0.005624 0.006037 0.006253 0.18% main() 1 0.004057 0.004122 0.004169 0.12% Gravity::get_new_grav_vector() 11 0.002758 0.003549 0.003914 0.12% Gravity::get_old_grav_vector() 10 0.001466 0.00234 0.002911 0.09% Amr::coarseTimeStep() 10 0.0008327 0.001443 0.001995 0.06% Castro::finalize_do_advance() 10 0.0005513 0.001113 0.001225 0.04% AmrLevel::FillPatch() 41 0.0007779 0.001051 0.001209 0.04% Amr::timeStep() 10 0.0001469 0.0001913 0.0004318 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002748 0.0002904 0.0003094 0.01% Castro::do_advance_ctu() 10 0.0001519 0.0001691 0.0001904 0.01% Castro::clean_state() 62 0.0001392 0.0001671 0.0001839 0.01% FillPatchIterator::FillFromLevel0() 41 9.629e-05 0.0001126 0.0001345 0.00% StateDataPhysBCFunct::() 41 0.000103 0.0001147 0.0001246 0.00% FabArray::ParallelCopy() 41 8.616e-05 9.614e-05 0.0001106 0.00% Castro::do_old_sources() 10 7.528e-05 8.93e-05 0.0001033 0.00% Castro::Castro() 1 5.073e-05 6.802e-05 8.196e-05 0.00% Castro::do_new_sources() 10 5.706e-05 6.551e-05 8.194e-05 0.00% Amr::FinalizeInit() 1 3.719e-06 1.369e-05 8.136e-05 0.00% FillPatchSingleLevel 41 6.516e-05 6.893e-05 7.76e-05 0.00% Castro::construct_old_source() 50 5.042e-05 6.537e-05 7.501e-05 0.00% Castro::apply_source_to_state() 20 4.015e-05 5.168e-05 5.969e-05 0.00% Amr::defBaseLevel() 1 4.215e-05 4.983e-05 5.918e-05 0.00% Castro::subcycle_advance_ctu() 10 4.124e-05 4.84e-05 5.739e-05 0.00% Castro::construct_old_gravity() 10 3.394e-05 4.274e-05 5.39e-05 0.00% Castro::construct_new_gravity() 10 3.137e-05 3.636e-05 5.018e-05 0.00% Castro::advance() 10 4.126e-05 4.511e-05 4.866e-05 0.00% Castro::expand_state() 10 2.176e-05 2.602e-05 3.159e-05 0.00% Castro::check_for_nan() 20 2.186e-05 2.528e-05 2.985e-05 0.00% Castro::post_timestep() 10 1.384e-05 1.624e-05 1.834e-05 0.00% Castro::post_init() 1 1.363e-05 1.54e-05 1.831e-05 0.00% Castro::computeNewDt() 9 9.075e-06 9.851e-06 1.112e-05 0.00% Amr::InitializeInit() 1 2.596e-06 3.475e-06 5.75e-06 0.00% Castro::computeInitialDt() 2 3.133e-06 3.771e-06 4.458e-06 0.00% Amr::initialInit() 1 1.483e-06 2.031e-06 2.813e-06 0.00% Amr::init() 1 2.08e-06 2.381e-06 2.725e-06 0.00% Other 261 0.01607 0.01853 0.02085 0.61% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.392 3.393 3.393 100.00% Amr::coarseTimeStep() 10 3.197 3.198 3.198 94.24% Amr::timeStep() 10 3.186 3.187 3.187 93.93% Castro::advance() 10 3.17 3.171 3.171 93.46% Castro::subcycle_advance_ctu() 10 3.096 3.1 3.115 91.79% Castro::do_advance_ctu() 10 3.096 3.1 3.114 91.79% Castro::construct_ctu_hydro_source() 10 2.351 2.354 2.358 69.49% Gravity::make_radial_gravity() 21 0.3058 0.3215 0.3466 10.21% Castro::construct_old_gravity() 10 0.1837 0.1971 0.2193 6.46% Gravity::get_old_grav_vector() 10 0.1826 0.1963 0.2187 6.45% AmrLevel::FillPatch() 41 0.1968 0.207 0.2138 6.30% Gravity::get_new_grav_vector() 11 0.2073 0.2082 0.2088 6.15% Castro::construct_new_gravity() 10 0.1852 0.1856 0.1862 5.49% Castro::initialize_do_advance() 10 0.1658 0.1735 0.1832 5.40% Amr::init() 1 0.1821 0.1826 0.183 5.39% FillPatchIterator::Initialize 41 0.1573 0.1687 0.1824 5.38% Amr::initialInit() 1 0.167 0.1679 0.1684 4.96% FillPatchIterator::FillFromLevel0() 41 0.1148 0.1247 0.1475 4.35% FillPatchSingleLevel 41 0.1147 0.1246 0.1474 4.35% Amr::InitializeInit() 1 0.05854 0.09603 0.1411 4.16% Amr::defBaseLevel() 1 0.05854 0.09602 0.1411 4.16% Castro::expand_state() 10 0.1123 0.1182 0.1275 3.76% Castro::initData() 1 0.04149 0.07874 0.1232 3.63% Castro::clean_state() 62 0.113 0.1161 0.1207 3.56% FabArray::ParallelCopy() 41 0.08127 0.09223 0.1188 3.50% check_for_negative_density() 10 0.03674 0.08668 0.1158 3.41% Amr::FinalizeInit() 1 0.02582 0.07188 0.1098 3.24% Castro::estTimeStep() 21 0.02998 0.07044 0.1096 3.23% amrex::Copy() 193 0.0654 0.08634 0.1041 3.07% Castro::do_old_sources() 10 0.09237 0.09567 0.09851 2.90% Castro::computeInitialDt() 2 0.00212 0.04773 0.08561 2.52% FabArray::ParallelCopy_finish() 41 0.03879 0.05097 0.0842 2.48% FabArray::setVal() 143 0.05552 0.06662 0.07339 2.16% Castro::initialize_advance() 10 0.05231 0.06699 0.07149 2.11% Castro::computeTemp() 63 0.06158 0.06471 0.06908 2.04% Castro::do_new_sources() 10 0.05756 0.06239 0.06644 1.96% Castro::reset_internal_energy(MultiFab) 63 0.04377 0.04606 0.05022 1.48% Castro::reset_internal_energy(Fab) 1008 0.04348 0.04577 0.04993 1.47% Castro::normalize_species() 62 0.04526 0.04588 0.04669 1.38% FabArray::ParallelCopy_nowait() 41 0.03452 0.04117 0.04308 1.27% StateDataPhysBCFunct::() 41 0.02855 0.03228 0.03798 1.12% StateData::FillBoundary(geom) 41 0.02844 0.03216 0.03786 1.12% Castro::construct_new_source() 50 0.02799 0.0296 0.031 0.91% Gravity::interpolate_monopole_grav() 21 0.02649 0.0269 0.02735 0.81% Castro::construct_new_gravity_source() 10 0.02237 0.02356 0.02486 0.73% Castro::post_init() 1 0.02344 0.02369 0.0238 0.70% Amr::writePlotFile() 2 0.02278 0.02289 0.02334 0.69% Castro::finalize_do_advance() 10 0.01121 0.01551 0.0201 0.59% Castro::post_timestep() 10 0.01525 0.01574 0.01635 0.48% Castro::check_for_nan() 20 0.01067 0.01245 0.01481 0.44% MultiFab::contains_nan() 20 0.01065 0.01242 0.01478 0.44% FabArray::setDomainBndry() 41 0.006935 0.01083 0.01296 0.38% Castro::apply_source_to_state() 20 0.01057 0.01216 0.01283 0.38% FabArray::Saxpy() 20 0.01053 0.01211 0.01278 0.38% VisMF::Write(FabArray) 2 0.008893 0.009727 0.01216 0.36% Castro::Castro() 1 0.01028 0.01098 0.01196 0.35% Castro::construct_old_source() 50 0.006264 0.008689 0.00921 0.27% Castro::construct_old_gravity_source() 10 0.006214 0.008624 0.009138 0.27% Castro::computeNewDt() 9 0.008315 0.008327 0.008335 0.25% Castro::initMFs() 1 0.006569 0.00721 0.008275 0.24% Other 261 0.02605 0.02958 0.033 0.97% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 29 B 36 B 41 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8663 KiB 8671 KiB 8673 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6745 KiB 6752 KiB 6756 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7134 KiB 7141 KiB 7142 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4558 KiB 4565 KiB 4588 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 221 KiB 232 KiB 244 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 14 KiB 16 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2800 KiB 2803 KiB 2804 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 229 KiB 241 KiB 260 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 36 KiB 41 KiB 55 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2028 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 78 KiB 78 KiB 79 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 69 KiB 74 KiB 82 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.06-22-g1d307c2c661a-dirty) finalized