Initializing AMReX (25.06-22-g1d307c2c661a-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.06-22-g1d307c2c661a-dirty) initialized Starting run at 05:17:51 UTC on 2025-08-26. Successfully read inputs file ... Castro git describe: 25.08-15-gbe8cc1969 AMReX git describe: 25.06-22-g1d307c2c6-dirty Microphysics git describe: 25.08-5-g5e63b7a9 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014673389 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.340944459 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.324365407 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.346913042 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.318896978 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.368672964 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.30925499 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.300181936 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.300332657 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.300487044 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.3016977 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007748348 seconds Ending run at 05:17:54 UTC on 2025-08-26. Run time = 3.391967196 Run time without initialization = 3.224587101 Average number of zones advanced per microsecond: 0.813 Average number of zones advanced per microsecond per rank: 0.102 TinyProfiler total time across processes [min...avg...max]: 3.3883 ... 3.3911 ... 3.3920 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1832 2.2401 2.3168 68.30% Gravity::make_radial_gravity() 21 0.2848 0.2931 0.312 9.20% check_for_negative_density() 10 0.02839 0.1076 0.1625 4.79% FabArray::ParallelCopy_finish() 41 0.03602 0.06133 0.1116 3.29% Castro::initData() 1 0.03874 0.07228 0.1025 3.02% amrex::Copy() 193 0.066 0.08122 0.09015 2.66% Castro::estTimeStep() 21 0.02128 0.05651 0.0853 2.51% FabArray::setVal() 143 0.05233 0.06577 0.07139 2.10% Castro::normalize_species() 62 0.04452 0.04655 0.05354 1.58% Castro::reset_internal_energy(Fab) 1008 0.04237 0.04574 0.05188 1.53% FabArray::ParallelCopy_nowait() 41 0.03434 0.04136 0.04369 1.29% FillPatchIterator::Initialize 41 0.02655 0.03431 0.03912 1.15% StateData::FillBoundary(geom) 41 0.02753 0.03137 0.03363 0.99% Gravity::interpolate_monopole_grav() 21 0.02629 0.02688 0.02768 0.82% Castro::construct_new_gravity_source() 10 0.02339 0.02437 0.02633 0.78% Castro::computeTemp() 63 0.01715 0.01787 0.01859 0.55% FabArray::setDomainBndry() 41 0.006856 0.01147 0.01789 0.53% Castro::initialize_do_advance() 10 0.01156 0.01647 0.01772 0.52% FabArray::Saxpy() 20 0.01077 0.01378 0.0174 0.51% Castro::construct_old_gravity_source() 10 0.007011 0.01128 0.01699 0.50% VisMF::Write(FabArray) 2 0.009311 0.009892 0.01347 0.40% Castro::initialize_advance() 10 0.005322 0.01045 0.01335 0.39% MultiFab::contains_nan() 20 0.01089 0.01156 0.01277 0.38% Amr::writePlotFile() 2 0.00751 0.009995 0.01048 0.31% Castro::initMFs() 1 0.006687 0.006976 0.008452 0.25% Castro::enforce_min_density() 62 0.005881 0.006085 0.006362 0.19% Castro::construct_new_source() 50 0.005538 0.006 0.006274 0.18% main() 1 0.003851 0.004215 0.004467 0.13% Gravity::get_new_grav_vector() 11 0.002799 0.00353 0.003888 0.11% Amr::coarseTimeStep() 10 0.001644 0.002319 0.002986 0.09% Gravity::get_old_grav_vector() 10 0.001392 0.002093 0.002581 0.08% AmrLevel::FillPatch() 41 0.0007255 0.001155 0.001452 0.04% Castro::finalize_do_advance() 10 0.0004942 0.001214 0.001341 0.04% Amr::timeStep() 10 0.0001222 0.0001797 0.0003685 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002772 0.0002967 0.0003201 0.01% Castro::do_advance_ctu() 10 0.000134 0.000164 0.0002001 0.01% Castro::clean_state() 62 0.0001449 0.0001578 0.0001764 0.01% StateDataPhysBCFunct::() 41 9.788e-05 0.0001152 0.0001335 0.00% FillPatchIterator::FillFromLevel0() 41 9.396e-05 0.0001081 0.0001279 0.00% Castro::construct_old_source() 50 4.406e-05 7.903e-05 0.0001259 0.00% Castro::do_old_sources() 10 6.952e-05 9.127e-05 0.0001158 0.00% FabArray::ParallelCopy() 41 8.688e-05 0.0001011 0.0001148 0.00% Castro::Castro() 1 5.455e-05 8.56e-05 0.0001034 0.00% Amr::FinalizeInit() 1 3.742e-06 1.524e-05 9.063e-05 0.00% FillPatchSingleLevel 41 6.27e-05 6.936e-05 8.319e-05 0.00% Castro::apply_source_to_state() 20 4.061e-05 5.903e-05 7.431e-05 0.00% Castro::do_new_sources() 10 5.337e-05 6.068e-05 6.854e-05 0.00% Castro::subcycle_advance_ctu() 10 3.826e-05 4.645e-05 5.809e-05 0.00% Amr::defBaseLevel() 1 3.689e-05 4.63e-05 5.464e-05 0.00% Castro::construct_old_gravity() 10 3.356e-05 3.861e-05 4.879e-05 0.00% Castro::advance() 10 3.191e-05 4.241e-05 4.763e-05 0.00% Castro::construct_new_gravity() 10 2.917e-05 3.41e-05 4.211e-05 0.00% Castro::expand_state() 10 2.134e-05 2.577e-05 3.231e-05 0.00% Castro::check_for_nan() 20 2.287e-05 2.562e-05 2.792e-05 0.00% Castro::post_timestep() 10 1.496e-05 1.65e-05 2.029e-05 0.00% Castro::post_init() 1 1.388e-05 1.543e-05 1.818e-05 0.00% Castro::computeNewDt() 9 8.921e-06 9.76e-06 1.103e-05 0.00% Amr::InitializeInit() 1 2.524e-06 3.731e-06 7.522e-06 0.00% Amr::init() 1 2.124e-06 2.849e-06 5.41e-06 0.00% Castro::computeInitialDt() 2 2.642e-06 3.618e-06 4.326e-06 0.00% Amr::initialInit() 1 1.708e-06 2.315e-06 3.09e-06 0.00% Other 199 0.009294 0.01428 0.01637 0.48% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.388 3.391 3.392 100.00% Amr::coarseTimeStep() 10 3.212 3.212 3.212 94.71% Amr::timeStep() 10 3.2 3.201 3.201 94.38% Castro::advance() 10 3.184 3.185 3.185 93.90% Castro::subcycle_advance_ctu() 10 3.109 3.114 3.128 92.21% Castro::do_advance_ctu() 10 3.109 3.114 3.128 92.21% Castro::construct_ctu_hydro_source() 10 2.365 2.369 2.374 69.98% Gravity::make_radial_gravity() 21 0.3019 0.3098 0.3247 9.57% AmrLevel::FillPatch() 41 0.2023 0.2147 0.2349 6.93% Gravity::get_new_grav_vector() 11 0.2043 0.207 0.2084 6.14% FillPatchIterator::Initialize 41 0.1648 0.1803 0.2073 6.11% Castro::construct_old_gravity() 10 0.1797 0.1844 0.1988 5.86% Gravity::get_old_grav_vector() 10 0.1789 0.1837 0.1982 5.84% Castro::construct_new_gravity() 10 0.1831 0.1847 0.1855 5.47% FillPatchIterator::FillFromLevel0() 41 0.1129 0.1346 0.1739 5.13% FillPatchSingleLevel 41 0.1128 0.1344 0.1738 5.13% Castro::initialize_do_advance() 10 0.1626 0.1662 0.1681 4.95% Amr::init() 1 0.164 0.1664 0.167 4.92% check_for_negative_density() 10 0.02839 0.1076 0.1625 4.79% Amr::initialInit() 1 0.1493 0.1518 0.1526 4.50% FabArray::ParallelCopy() 41 0.07909 0.1029 0.1461 4.31% Amr::InitializeInit() 1 0.05971 0.0957 0.126 3.72% Amr::defBaseLevel() 1 0.05971 0.09569 0.126 3.72% Castro::clean_state() 62 0.1102 0.1158 0.1208 3.56% Castro::expand_state() 10 0.1091 0.1131 0.119 3.51% Castro::do_old_sources() 10 0.111 0.1133 0.1183 3.49% FabArray::ParallelCopy_finish() 41 0.03602 0.06133 0.1116 3.29% Castro::initData() 1 0.04268 0.07624 0.1066 3.14% amrex::Copy() 193 0.066 0.08122 0.09015 2.66% Amr::FinalizeInit() 1 0.0263 0.05611 0.08958 2.64% Castro::estTimeStep() 21 0.02128 0.05651 0.0853 2.51% Castro::initialize_advance() 10 0.05321 0.0677 0.07277 2.15% FabArray::setVal() 143 0.05233 0.06577 0.07139 2.10% Castro::computeTemp() 63 0.05984 0.0639 0.07075 2.09% Castro::do_new_sources() 10 0.05952 0.06301 0.06756 1.99% Castro::computeInitialDt() 2 0.002074 0.03203 0.06565 1.94% Castro::normalize_species() 62 0.04452 0.04655 0.05354 1.58% Castro::reset_internal_energy(MultiFab) 63 0.04265 0.04603 0.05218 1.54% Castro::reset_internal_energy(Fab) 1008 0.04237 0.04574 0.05188 1.53% FabArray::ParallelCopy_nowait() 41 0.03447 0.04146 0.04379 1.29% StateDataPhysBCFunct::() 41 0.02765 0.03149 0.03374 0.99% StateData::FillBoundary(geom) 41 0.02753 0.03137 0.03363 0.99% Castro::construct_new_source() 50 0.02922 0.03037 0.0326 0.96% Gravity::interpolate_monopole_grav() 21 0.02629 0.02688 0.02768 0.82% Castro::construct_new_gravity_source() 10 0.02339 0.02437 0.02633 0.78% Castro::post_init() 1 0.02254 0.02347 0.02378 0.70% Amr::writePlotFile() 2 0.02228 0.02241 0.0227 0.67% Castro::finalize_do_advance() 10 0.0121 0.01726 0.02136 0.63% FabArray::setDomainBndry() 41 0.006856 0.01147 0.01789 0.53% Castro::apply_source_to_state() 20 0.01081 0.01384 0.01748 0.52% FabArray::Saxpy() 20 0.01077 0.01378 0.0174 0.51% Castro::construct_old_source() 50 0.007055 0.01135 0.01712 0.50% Castro::construct_old_gravity_source() 10 0.007011 0.01128 0.01699 0.50% Castro::post_timestep() 10 0.01492 0.01554 0.01676 0.49% VisMF::Write(FabArray) 2 0.009311 0.009892 0.01347 0.40% Castro::check_for_nan() 20 0.01092 0.01159 0.01279 0.38% MultiFab::contains_nan() 20 0.01089 0.01156 0.01277 0.38% Castro::Castro() 1 0.01097 0.01131 0.0121 0.36% Castro::computeNewDt() 9 0.00844 0.008451 0.008474 0.25% Castro::initMFs() 1 0.006687 0.006976 0.008452 0.25% Castro::enforce_min_density() 62 0.005881 0.006085 0.006362 0.19% Other 199 0.01947 0.02731 0.03133 0.92% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 31 B 45 B 100 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 15 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8655 KiB 8666 KiB 8675 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6783 KiB 6785 KiB 6791 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7129 KiB 7137 KiB 7143 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4580 KiB 4587 KiB 4604 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 224 KiB 236 KiB 257 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 16 KiB 16 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2813 KiB 2817 KiB 2819 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 226 KiB 232 KiB 244 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 35 KiB 45 KiB 65 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2026 KiB 2028 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 77 KiB 78 KiB 78 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 67 KiB 69 KiB 75 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.06-22-g1d307c2c661a-dirty) finalized