Initializing AMReX (25.06-22-g1d307c2c661a-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.06-22-g1d307c2c661a-dirty) initialized Starting run at 05:17:37 UTC on 2025-08-28. Successfully read inputs file ... Castro git describe: 25.08-15-gbe8cc1969 AMReX git describe: 25.06-22-g1d307c2c6-dirty Microphysics git describe: 25.08-5-g5e63b7a9 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.01512129 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.341343612 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.330102605 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.315070387 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.313003185 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.362839227 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.308522802 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.298679205 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.299655831 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.300419096 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.299373561 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007487189 seconds Ending run at 05:17:40 UTC on 2025-08-28. Run time = 3.346018146 Run time without initialization = 3.181498231 Average number of zones advanced per microsecond: 0.824 Average number of zones advanced per microsecond per rank: 0.103 TinyProfiler total time across processes [min...avg...max]: 3.3448 ... 3.3455 ... 3.3460 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1652 2.2307 2.3012 68.77% Gravity::make_radial_gravity() 21 0.287 0.2927 0.3111 9.30% check_for_negative_density() 10 0.02514 0.09779 0.1686 5.04% Castro::initData() 1 0.03711 0.07155 0.1014 3.03% Castro::estTimeStep() 21 0.02189 0.05821 0.0955 2.85% amrex::Copy() 193 0.06301 0.07852 0.08828 2.64% FabArray::ParallelCopy_finish() 41 0.03592 0.04622 0.08417 2.52% FabArray::setVal() 143 0.05099 0.06542 0.07068 2.11% Castro::normalize_species() 62 0.04535 0.04659 0.04928 1.47% Castro::reset_internal_energy(Fab) 1008 0.04225 0.04582 0.04819 1.44% FabArray::ParallelCopy_nowait() 41 0.03663 0.04148 0.04319 1.29% StateData::FillBoundary(geom) 41 0.02709 0.03086 0.03386 1.01% FillPatchIterator::Initialize 41 0.0276 0.03178 0.0338 1.01% Castro::construct_new_gravity_source() 10 0.02331 0.02476 0.02781 0.83% Gravity::interpolate_monopole_grav() 21 0.02627 0.02657 0.02689 0.80% Castro::computeTemp() 63 0.0172 0.01823 0.01888 0.56% Castro::initialize_do_advance() 10 0.0115 0.01591 0.0172 0.51% FabArray::Saxpy() 20 0.01063 0.01243 0.01356 0.41% Castro::initialize_advance() 10 0.005281 0.01071 0.01335 0.40% VisMF::Write(FabArray) 2 0.009158 0.00973 0.01277 0.38% MultiFab::contains_nan() 20 0.01023 0.01129 0.01252 0.37% FabArray::setDomainBndry() 41 0.006942 0.01019 0.01229 0.37% Amr::writePlotFile() 2 0.007992 0.01001 0.01057 0.32% Castro::construct_old_gravity_source() 10 0.006814 0.009665 0.01044 0.31% Castro::initMFs() 1 0.006563 0.007117 0.008697 0.26% Castro::enforce_min_density() 62 0.005888 0.006177 0.006541 0.20% Castro::construct_new_source() 50 0.005421 0.006 0.006359 0.19% main() 1 0.003765 0.004015 0.004398 0.13% Gravity::get_new_grav_vector() 11 0.002991 0.003509 0.00385 0.12% Amr::coarseTimeStep() 10 0.001333 0.002175 0.002915 0.09% Gravity::get_old_grav_vector() 10 0.001501 0.002051 0.002389 0.07% AmrLevel::FillPatch() 41 0.0007657 0.001277 0.001396 0.04% Castro::finalize_do_advance() 10 0.0005136 0.00115 0.001265 0.04% Amr::timeStep() 10 0.0001344 0.0001863 0.0004014 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002749 0.000292 0.0003216 0.01% Castro::do_advance_ctu() 10 0.0001371 0.000177 0.0002168 0.01% Castro::clean_state() 62 0.0001397 0.0001601 0.0001758 0.01% StateDataPhysBCFunct::() 41 9.986e-05 0.0001171 0.0001407 0.00% Castro::do_old_sources() 10 7.368e-05 9.731e-05 0.0001212 0.00% FillPatchIterator::FillFromLevel0() 41 9.979e-05 0.0001057 0.0001105 0.00% Castro::Castro() 1 4.687e-05 7.387e-05 0.0001081 0.00% FabArray::ParallelCopy() 41 8.246e-05 9.406e-05 0.0001044 0.00% Castro::construct_old_source() 50 4.643e-05 7.147e-05 8.518e-05 0.00% FillPatchSingleLevel 41 6.359e-05 6.847e-05 7.739e-05 0.00% Castro::do_new_sources() 10 4.957e-05 6.383e-05 7.46e-05 0.00% Amr::FinalizeInit() 1 3.413e-06 1.158e-05 6.492e-05 0.00% Castro::advance() 10 3.41e-05 5.101e-05 6.338e-05 0.00% Castro::apply_source_to_state() 20 4.28e-05 5.452e-05 6.083e-05 0.00% Castro::subcycle_advance_ctu() 10 4.574e-05 5.021e-05 5.979e-05 0.00% Amr::defBaseLevel() 1 4.029e-05 4.693e-05 5.589e-05 0.00% Castro::construct_old_gravity() 10 3.485e-05 4.206e-05 5.102e-05 0.00% Castro::construct_new_gravity() 10 3.134e-05 3.582e-05 4.406e-05 0.00% Castro::expand_state() 10 2.143e-05 2.687e-05 3.477e-05 0.00% Castro::check_for_nan() 20 2.199e-05 2.511e-05 2.738e-05 0.00% Castro::post_init() 1 1.48e-05 1.676e-05 2.55e-05 0.00% Castro::post_timestep() 10 1.392e-05 1.609e-05 1.784e-05 0.00% Castro::computeNewDt() 9 9.425e-06 1.004e-05 1.197e-05 0.00% Amr::InitializeInit() 1 2.559e-06 3.428e-06 6.386e-06 0.00% Amr::init() 1 2.037e-06 2.831e-06 5.846e-06 0.00% Castro::computeInitialDt() 2 2.844e-06 3.408e-06 3.965e-06 0.00% Amr::initialInit() 1 1.513e-06 2.009e-06 2.558e-06 0.00% Other 199 0.009418 0.01288 0.01474 0.44% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.345 3.345 3.346 100.00% Amr::coarseTimeStep() 10 3.17 3.17 3.17 94.73% Amr::timeStep() 10 3.156 3.157 3.158 94.37% Castro::advance() 10 3.14 3.141 3.141 93.87% Castro::subcycle_advance_ctu() 10 3.065 3.069 3.086 92.22% Castro::do_advance_ctu() 10 3.065 3.069 3.086 92.22% Castro::construct_ctu_hydro_source() 10 2.345 2.35 2.355 70.37% Gravity::make_radial_gravity() 21 0.3042 0.309 0.3248 9.71% Gravity::get_new_grav_vector() 11 0.2067 0.2079 0.2098 6.27% AmrLevel::FillPatch() 41 0.1818 0.1932 0.2064 6.17% Castro::construct_old_gravity() 10 0.176 0.1812 0.1949 5.82% Gravity::get_old_grav_vector() 10 0.1753 0.1806 0.1942 5.81% Castro::construct_new_gravity() 10 0.1842 0.185 0.1872 5.59% FillPatchIterator::Initialize 41 0.1502 0.161 0.1829 5.47% check_for_negative_density() 10 0.02514 0.09779 0.1686 5.04% Castro::initialize_do_advance() 10 0.156 0.1617 0.1648 4.92% Amr::init() 1 0.1631 0.164 0.1644 4.91% Amr::initialInit() 1 0.1478 0.1491 0.1501 4.49% FillPatchIterator::FillFromLevel0() 41 0.1135 0.119 0.1484 4.44% FillPatchSingleLevel 41 0.1134 0.1189 0.1483 4.43% Amr::InitializeInit() 1 0.05841 0.09301 0.1226 3.67% Amr::defBaseLevel() 1 0.05841 0.09301 0.1226 3.67% FabArray::ParallelCopy() 41 0.07932 0.08789 0.121 3.62% Castro::clean_state() 62 0.1105 0.1164 0.1208 3.61% Castro::expand_state() 10 0.1018 0.1089 0.118 3.53% Castro::initData() 1 0.04104 0.07531 0.1055 3.15% Castro::do_old_sources() 10 0.09122 0.09305 0.09597 2.87% Castro::estTimeStep() 21 0.02189 0.05821 0.0955 2.85% Amr::FinalizeInit() 1 0.02684 0.05612 0.09113 2.72% amrex::Copy() 193 0.06301 0.07852 0.08828 2.64% FabArray::ParallelCopy_finish() 41 0.03592 0.04622 0.08417 2.52% Castro::initialize_advance() 10 0.05079 0.06832 0.07206 2.15% FabArray::setVal() 143 0.05099 0.06542 0.07068 2.11% Castro::do_new_sources() 10 0.05959 0.06399 0.07041 2.10% Castro::computeTemp() 63 0.05974 0.06434 0.0674 2.01% Castro::computeInitialDt() 2 0.002106 0.03142 0.06644 1.99% Castro::normalize_species() 62 0.04535 0.04659 0.04928 1.47% Castro::reset_internal_energy(MultiFab) 63 0.04254 0.04611 0.04852 1.45% Castro::reset_internal_energy(Fab) 1008 0.04225 0.04582 0.04819 1.44% FabArray::ParallelCopy_nowait() 41 0.03676 0.04158 0.0433 1.29% Castro::construct_new_source() 50 0.02923 0.03076 0.03414 1.02% StateDataPhysBCFunct::() 41 0.02722 0.03098 0.034 1.02% StateData::FillBoundary(geom) 41 0.02709 0.03086 0.03386 1.01% Castro::construct_new_gravity_source() 10 0.02331 0.02476 0.02781 0.83% Gravity::interpolate_monopole_grav() 21 0.02627 0.02657 0.02689 0.80% Castro::post_init() 1 0.02342 0.02412 0.02467 0.74% Amr::writePlotFile() 2 0.02179 0.02241 0.02288 0.68% Castro::finalize_do_advance() 10 0.01146 0.01835 0.02264 0.68% Castro::post_timestep() 10 0.01513 0.01607 0.01663 0.50% Castro::apply_source_to_state() 20 0.01067 0.01248 0.01361 0.41% FabArray::Saxpy() 20 0.01063 0.01243 0.01356 0.41% VisMF::Write(FabArray) 2 0.009158 0.00973 0.01277 0.38% Castro::check_for_nan() 20 0.01025 0.01132 0.01254 0.37% MultiFab::contains_nan() 20 0.01023 0.01129 0.01252 0.37% FabArray::setDomainBndry() 41 0.006942 0.01019 0.01229 0.37% Castro::Castro() 1 0.01051 0.01103 0.01197 0.36% Castro::construct_old_source() 50 0.006861 0.009737 0.01053 0.31% Castro::construct_old_gravity_source() 10 0.006814 0.009665 0.01044 0.31% Castro::computeNewDt() 9 0.009588 0.009606 0.009623 0.29% Castro::initMFs() 1 0.006563 0.007117 0.008697 0.26% Castro::enforce_min_density() 62 0.005888 0.006177 0.006541 0.20% Other 199 0.01954 0.02448 0.02771 0.83% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 35 B 43 B 51 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 15 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8659 KiB 8669 KiB 8673 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6783 KiB 6785 KiB 6787 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7132 KiB 7139 KiB 7142 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4577 KiB 4582 KiB 4604 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 204 KiB 218 KiB 235 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 16 KiB 17 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2812 KiB 2815 KiB 2816 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 231 KiB 235 KiB 247 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 36 KiB 40 KiB 57 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 79 KiB 79 KiB 80 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 67 KiB 69 KiB 74 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.06-22-g1d307c2c661a-dirty) finalized