Initializing AMReX (25.06-22-g1d307c2c661a-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.06-22-g1d307c2c661a-dirty) initialized Starting run at 05:17:41 UTC on 2025-09-01. Successfully read inputs file ... Castro git describe: 25.08-15-gbe8cc1969 AMReX git describe: 25.06-22-g1d307c2c6-dirty Microphysics git describe: 25.08-5-g5e63b7a9 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.01481517 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.351374942 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.340077445 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.324187187 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.323789838 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.388027825 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.308084035 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.300013778 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.297127058 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.298891946 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.298123734 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007374759 seconds Ending run at 05:17:44 UTC on 2025-09-01. Run time = 3.432893731 Run time without initialization = 3.24205217 Average number of zones advanced per microsecond: 0.809 Average number of zones advanced per microsecond per rank: 0.101 TinyProfiler total time across processes [min...avg...max]: 3.4275 ... 3.4314 ... 3.4330 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1824 2.2313 2.2890 66.68% Gravity::make_radial_gravity() 21 0.2934 0.3123 0.3265 9.51% check_for_negative_density() 10 0.04269 0.1055 0.1603 4.67% Castro::initData() 1 0.03718 0.07344 0.1171 3.41% Castro::estTimeStep() 21 0.03429 0.07677 0.116 3.38% FabArray::ParallelCopy_finish() 41 0.04722 0.07151 0.1117 3.25% amrex::Copy() 193 0.06272 0.08143 0.09575 2.79% FabArray::setVal() 143 0.05595 0.06699 0.07597 2.21% Castro::normalize_species() 62 0.04458 0.04661 0.05415 1.58% Castro::reset_internal_energy(Fab) 1008 0.04548 0.04664 0.04817 1.40% FabArray::ParallelCopy_nowait() 41 0.03572 0.04109 0.04432 1.29% FillPatchIterator::Initialize 41 0.02709 0.0336 0.03835 1.12% StateData::FillBoundary(geom) 41 0.0284 0.03151 0.03463 1.01% Gravity::interpolate_monopole_grav() 21 0.02654 0.02689 0.02715 0.79% Castro::construct_new_gravity_source() 10 0.02215 0.02402 0.02618 0.76% Castro::initialize_do_advance() 10 0.01156 0.01709 0.02461 0.72% Castro::computeTemp() 63 0.01804 0.01839 0.01908 0.56% MultiFab::contains_nan() 20 0.01056 0.01246 0.01502 0.44% Castro::initialize_advance() 10 0.005427 0.01072 0.01375 0.40% FabArray::Saxpy() 20 0.01072 0.0121 0.0134 0.39% Amr::writePlotFile() 2 0.007507 0.01032 0.01298 0.38% FabArray::setDomainBndry() 41 0.00714 0.0107 0.01276 0.37% VisMF::Write(FabArray) 2 0.008381 0.009647 0.01223 0.36% Castro::initMFs() 1 0.006515 0.007671 0.01096 0.32% Castro::construct_old_gravity_source() 10 0.006381 0.008743 0.009199 0.27% StateData::define() 4 0.005354 0.006187 0.008359 0.24% Castro::construct_new_source() 50 0.005704 0.006005 0.0063 0.18% main() 1 0.003655 0.004108 0.004343 0.13% Gravity::get_new_grav_vector() 11 0.002739 0.00351 0.003836 0.11% Gravity::get_old_grav_vector() 10 0.001573 0.002052 0.002567 0.07% Amr::coarseTimeStep() 10 0.001315 0.001438 0.002039 0.06% Castro::finalize_do_advance() 10 0.0005361 0.001144 0.001379 0.04% AmrLevel::FillPatch() 41 0.0008213 0.001147 0.001289 0.04% Amr::timeStep() 10 0.0001364 0.0001993 0.0004827 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002752 0.0002908 0.0003006 0.01% Castro::do_advance_ctu() 10 0.0001611 0.0001821 0.0002068 0.01% Castro::clean_state() 62 0.0001448 0.0001642 0.0001874 0.01% StateDataPhysBCFunct::() 41 0.0001074 0.0001347 0.0001699 0.00% FillPatchIterator::FillFromLevel0() 41 9.976e-05 0.0001126 0.0001316 0.00% Castro::do_old_sources() 10 7.794e-05 9.576e-05 0.0001209 0.00% FabArray::ParallelCopy() 41 9.103e-05 9.83e-05 0.0001115 0.00% FillPatchSingleLevel 41 6.478e-05 7.591e-05 8.515e-05 0.00% Castro::Castro() 1 5.598e-05 6.822e-05 8.295e-05 0.00% Amr::FinalizeInit() 1 3.5e-06 1.347e-05 7.726e-05 0.00% Castro::construct_old_source() 50 5.012e-05 6.624e-05 7.668e-05 0.00% Castro::do_new_sources() 10 5.393e-05 6.558e-05 7.079e-05 0.00% Amr::defBaseLevel() 1 4.371e-05 5.034e-05 6.439e-05 0.00% Castro::subcycle_advance_ctu() 10 4.084e-05 4.83e-05 5.839e-05 0.00% Castro::advance() 10 4.207e-05 4.763e-05 5.819e-05 0.00% Castro::apply_source_to_state() 20 4.731e-05 5.114e-05 5.685e-05 0.00% Castro::construct_old_gravity() 10 3.781e-05 4.562e-05 5.487e-05 0.00% Castro::expand_state() 10 2.24e-05 2.886e-05 4.406e-05 0.00% Castro::construct_new_gravity() 10 3.009e-05 3.575e-05 4.236e-05 0.00% Castro::check_for_nan() 20 2.23e-05 2.673e-05 3.374e-05 0.00% Castro::post_timestep() 10 1.58e-05 1.936e-05 3.188e-05 0.00% Castro::post_init() 1 1.412e-05 1.775e-05 2.365e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.007e-05 1.369e-05 2.04e-05 0.00% Castro::computeNewDt() 9 9.001e-06 1.022e-05 1.143e-05 0.00% Amr::InitializeInit() 1 2.79e-06 3.494e-06 5.304e-06 0.00% Castro::computeInitialDt() 2 3.004e-06 3.478e-06 4.137e-06 0.00% Amr::init() 1 2.09e-06 2.591e-06 3.425e-06 0.00% Amr::initialInit() 1 1.386e-06 2.102e-06 2.596e-06 0.00% Other 256 0.01069 0.01629 0.01965 0.57% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.427 3.431 3.433 100.00% Amr::coarseTimeStep() 10 3.23 3.23 3.23 94.10% Amr::timeStep() 10 3.219 3.219 3.219 93.78% Castro::advance() 10 3.202 3.203 3.203 93.31% Castro::subcycle_advance_ctu() 10 3.127 3.131 3.145 91.62% Castro::do_advance_ctu() 10 3.127 3.131 3.145 91.62% Castro::construct_ctu_hydro_source() 10 2.354 2.358 2.365 68.89% Gravity::make_radial_gravity() 21 0.3104 0.3289 0.3396 9.89% AmrLevel::FillPatch() 41 0.2137 0.2231 0.2358 6.87% Castro::construct_old_gravity() 10 0.1887 0.2036 0.2111 6.15% FillPatchIterator::Initialize 41 0.1764 0.1889 0.2106 6.14% Gravity::get_old_grav_vector() 10 0.1876 0.2027 0.2104 6.13% Gravity::get_new_grav_vector() 11 0.2073 0.2085 0.2094 6.10% Amr::init() 1 0.1853 0.1891 0.1906 5.55% Castro::initialize_do_advance() 10 0.1711 0.178 0.1902 5.54% Castro::construct_new_gravity() 10 0.1849 0.186 0.1868 5.44% FillPatchIterator::FillFromLevel0() 41 0.1253 0.1446 0.1764 5.14% FillPatchSingleLevel 41 0.1252 0.1445 0.1763 5.13% Amr::initialInit() 1 0.1698 0.1741 0.1756 5.12% check_for_negative_density() 10 0.04269 0.1055 0.1603 4.67% FabArray::ParallelCopy() 41 0.09173 0.1128 0.1476 4.30% Amr::InitializeInit() 1 0.06226 0.09899 0.1441 4.20% Amr::defBaseLevel() 1 0.06225 0.09898 0.1441 4.20% Castro::expand_state() 10 0.1139 0.1229 0.1343 3.91% Castro::clean_state() 62 0.1143 0.1174 0.1271 3.70% Castro::initData() 1 0.04097 0.07718 0.1205 3.51% Castro::estTimeStep() 21 0.03429 0.07677 0.116 3.38% Amr::FinalizeInit() 1 0.02566 0.07509 0.1133 3.30% FabArray::ParallelCopy_finish() 41 0.04722 0.07151 0.1117 3.25% Castro::do_old_sources() 10 0.1047 0.1085 0.1114 3.24% amrex::Copy() 193 0.06272 0.08143 0.09575 2.79% Castro::computeInitialDt() 2 0.002073 0.05105 0.08923 2.60% FabArray::setVal() 143 0.05595 0.06699 0.07597 2.21% Castro::initialize_advance() 10 0.05367 0.06839 0.07289 2.12% Castro::do_new_sources() 10 0.05751 0.06296 0.06805 1.98% Castro::computeTemp() 63 0.06386 0.06532 0.06755 1.97% Castro::normalize_species() 62 0.04458 0.04661 0.05415 1.58% Castro::reset_internal_energy(MultiFab) 63 0.04577 0.04693 0.04847 1.41% Castro::reset_internal_energy(Fab) 1008 0.04548 0.04664 0.04817 1.40% FabArray::ParallelCopy_nowait() 41 0.03585 0.04119 0.04442 1.29% StateDataPhysBCFunct::() 41 0.02854 0.03165 0.03478 1.01% StateData::FillBoundary(geom) 41 0.0284 0.03151 0.03463 1.01% Castro::construct_new_source() 50 0.02786 0.03002 0.03238 0.94% Gravity::interpolate_monopole_grav() 21 0.02654 0.02689 0.02715 0.79% Castro::construct_new_gravity_source() 10 0.02215 0.02402 0.02618 0.76% Castro::finalize_do_advance() 10 0.01198 0.01821 0.02411 0.70% Castro::post_init() 1 0.02333 0.02356 0.02369 0.69% Amr::writePlotFile() 2 0.02242 0.02253 0.02297 0.67% Castro::post_timestep() 10 0.01582 0.01601 0.01619 0.47% Castro::Castro() 1 0.0104 0.01166 0.01516 0.44% Castro::check_for_nan() 20 0.01059 0.01249 0.01504 0.44% MultiFab::contains_nan() 20 0.01056 0.01246 0.01502 0.44% Castro::apply_source_to_state() 20 0.01076 0.01215 0.01346 0.39% FabArray::Saxpy() 20 0.01072 0.0121 0.0134 0.39% FabArray::setDomainBndry() 41 0.00714 0.0107 0.01276 0.37% VisMF::Write(FabArray) 2 0.008381 0.009647 0.01223 0.36% Castro::initMFs() 1 0.006515 0.007671 0.01096 0.32% Castro::construct_old_source() 50 0.006431 0.008809 0.009275 0.27% Castro::construct_old_gravity_source() 10 0.006381 0.008743 0.009199 0.27% Castro::computeNewDt() 9 0.008638 0.008661 0.008686 0.25% AmrLevel::AmrLevel(dm) 1 0.005365 0.0062 0.008378 0.24% StateData::define() 4 0.005354 0.006187 0.008359 0.24% Other 256 0.01522 0.02508 0.03025 0.88% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 28 B 41 B 72 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 13 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8651 KiB 8660 KiB 8663 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6733 KiB 6742 KiB 6753 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7124 KiB 7133 KiB 7141 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4551 KiB 4558 KiB 4586 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 234 KiB 246 KiB 265 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 13 KiB 16 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2795 KiB 2799 KiB 2803 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 230 KiB 244 KiB 252 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 41 KiB 50 KiB 68 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2025 KiB 2027 KiB 2028 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 77 KiB 78 KiB 78 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 70 KiB 75 KiB 78 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.06-22-g1d307c2c661a-dirty) finalized