Initializing AMReX (25.06-22-g1d307c2c661a-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.06-22-g1d307c2c661a-dirty) initialized Starting run at 05:30:54 UTC on 2025-09-02. Successfully read inputs file ... Castro git describe: 25.08-15-gbe8cc1969 AMReX git describe: 25.06-22-g1d307c2c6-dirty Microphysics git describe: 25.09 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.040087231 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.743223672 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.605328731 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.5894028 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.592312242 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.59168092 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.588176336 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.589567803 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.592920776 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.59237266 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.592173096 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.012558898 seconds Ending run at 05:31:00 UTC on 2025-09-02. Run time = 6.571645193 Run time without initialization = 6.100332751 Average number of zones advanced per microsecond: 0.430 Average number of zones advanced per microsecond per rank: 0.054 TinyProfiler total time across processes [min...avg...max]: 6.5528 ... 6.5631 ... 6.5723 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 3.7991 4.1374 4.4339 67.46% check_for_negative_density() 10 0.07747 0.375 0.725 11.03% Gravity::make_radial_gravity() 21 0.6083 0.6399 0.68 10.35% Castro::estTimeStep() 21 0.05028 0.1702 0.2808 4.27% Castro::initData() 1 0.09894 0.1717 0.2636 4.01% FabArray::ParallelCopy_finish() 41 0.09768 0.141 0.1939 2.95% amrex::Copy() 193 0.084 0.1121 0.1353 2.06% FabArray::setVal() 143 0.06646 0.08656 0.1054 1.60% Castro::normalize_species() 62 0.07935 0.08753 0.09683 1.47% Castro::reset_internal_energy(Fab) 1008 0.07285 0.08519 0.09668 1.47% StateData::FillBoundary(geom) 41 0.05848 0.0659 0.07617 1.16% Castro::construct_new_gravity_source() 10 0.03479 0.05067 0.06846 1.04% FabArray::ParallelCopy_nowait() 41 0.05632 0.05913 0.06638 1.01% FillPatchIterator::Initialize 41 0.04212 0.04681 0.0528 0.80% Gravity::interpolate_monopole_grav() 21 0.03724 0.04219 0.04734 0.72% Amr::writePlotFile() 2 0.02317 0.03742 0.04645 0.71% Castro::computeTemp() 63 0.03043 0.03684 0.04429 0.67% VisMF::Write(FabArray) 2 0.01218 0.01734 0.0329 0.50% Castro::initialize_do_advance() 10 0.01912 0.02241 0.03024 0.46% Castro::initMFs() 1 0.008723 0.01817 0.02255 0.34% MultiFab::contains_nan() 20 0.01888 0.02008 0.02176 0.33% DistributionMapping::LeastUsedCPUs() 1 3.587e-05 0.01085 0.02039 0.31% FabArray::setDomainBndry() 41 0.01234 0.01469 0.01798 0.27% FabArray::Saxpy() 20 0.01417 0.01572 0.01691 0.26% StateData::define() 4 0.0073 0.0143 0.01665 0.25% Castro::enforce_min_density() 62 0.01078 0.01171 0.01503 0.23% Castro::initialize_advance() 10 0.008207 0.01152 0.01501 0.23% main() 1 0.008139 0.009392 0.01281 0.19% Castro::construct_new_source() 50 0.007721 0.00883 0.01007 0.15% Gravity::get_new_grav_vector() 11 0.003592 0.006181 0.00976 0.15% Amr::coarseTimeStep() 10 0.001431 0.005712 0.009171 0.14% Gravity::get_old_grav_vector() 10 0.002031 0.003087 0.006214 0.09% Amr::timeStep() 10 0.0002014 0.0005216 0.002388 0.04% Castro::finalize_do_advance() 10 0.001669 0.001728 0.001786 0.03% AmrLevel::FillPatch() 41 0.001284 0.001359 0.001417 0.02% Castro::reset_internal_energy(MultiFab) 63 0.0005907 0.0006591 0.0007667 0.01% Amr::FinalizeInit() 1 4.556e-06 0.0001019 0.0007474 0.01% Castro::post_init() 1 1.765e-05 5.922e-05 0.0003151 0.00% Castro::do_advance_ctu() 10 0.0002456 0.0002677 0.0002949 0.00% Castro::clean_state() 62 0.0002425 0.000264 0.0002863 0.00% StateDataPhysBCFunct::() 41 0.0001825 0.0001948 0.0002144 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001532 0.0001721 0.0001965 0.00% Castro::do_old_sources() 10 0.0001298 0.0001502 0.0001723 0.00% FabArray::ParallelCopy() 41 0.0001519 0.0001602 0.0001711 0.00% FillPatchSingleLevel 41 0.0001247 0.0001358 0.0001455 0.00% Castro::do_new_sources() 10 8.467e-05 0.0001098 0.0001348 0.00% Castro::construct_new_gravity() 10 5.108e-05 7.285e-05 0.0001128 0.00% Castro::construct_old_gravity() 10 5.281e-05 6.519e-05 9.325e-05 0.00% Castro::subcycle_advance_ctu() 10 6.198e-05 7.236e-05 8.42e-05 0.00% Amr::defBaseLevel() 1 5.634e-05 6.495e-05 8.315e-05 0.00% Castro::Castro() 1 4.845e-05 6.313e-05 7.509e-05 0.00% Castro::advance() 10 5.154e-05 6.135e-05 7.438e-05 0.00% Castro::apply_source_to_state() 20 5.351e-05 5.781e-05 6.655e-05 0.00% Castro::check_for_nan() 20 3.661e-05 4.535e-05 5.514e-05 0.00% Castro::expand_state() 10 3.601e-05 4.153e-05 4.863e-05 0.00% Castro::post_timestep() 10 2.099e-05 2.757e-05 4.507e-05 0.00% Castro::computeInitialDt() 2 4.094e-06 9.854e-06 3.821e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.718e-05 2.252e-05 2.506e-05 0.00% Amr::init() 1 2.757e-06 5.618e-06 2.168e-05 0.00% Castro::computeNewDt() 9 1.791e-05 1.942e-05 2.114e-05 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 4.883e-06 6.753e-06 9.492e-06 0.00% Amr::InitializeInit() 1 3.022e-06 4.361e-06 6.045e-06 0.00% Amr::initialInit() 1 2.063e-06 2.663e-06 4.216e-06 0.00% Other 252 0.01665 0.02108 0.03253 0.49% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 6.553 6.563 6.572 100.00% Amr::coarseTimeStep() 10 6.075 6.078 6.079 92.49% Amr::timeStep() 10 6.048 6.051 6.055 92.14% Castro::advance() 10 6.019 6.021 6.022 91.62% Castro::subcycle_advance_ctu() 10 5.897 5.915 5.937 90.34% Castro::do_advance_ctu() 10 5.897 5.915 5.937 90.33% Castro::construct_ctu_hydro_source() 10 4.543 4.552 4.561 69.39% check_for_negative_density() 10 0.07747 0.375 0.725 11.03% Gravity::make_radial_gravity() 21 0.6284 0.6606 0.7009 10.66% Amr::init() 1 0.453 0.4625 0.4712 7.17% Gravity::get_new_grav_vector() 11 0.4138 0.4185 0.4256 6.48% Amr::initialInit() 1 0.4078 0.4168 0.4252 6.47% Castro::construct_old_gravity() 10 0.3623 0.3897 0.4151 6.32% Gravity::get_old_grav_vector() 10 0.3615 0.3889 0.4143 6.30% AmrLevel::FillPatch() 41 0.3506 0.3779 0.4059 6.18% FillPatchIterator::Initialize 41 0.2922 0.3283 0.3662 5.57% Castro::construct_new_gravity() 10 0.3316 0.3367 0.3411 5.19% Amr::InitializeInit() 1 0.1439 0.2279 0.3249 4.94% Amr::defBaseLevel() 1 0.1439 0.2279 0.3249 4.94% FillPatchIterator::FillFromLevel0() 41 0.2296 0.2668 0.3111 4.73% FillPatchSingleLevel 41 0.2295 0.2667 0.3109 4.73% Castro::initialize_do_advance() 10 0.2823 0.2965 0.3024 4.60% Castro::estTimeStep() 21 0.05028 0.1702 0.2808 4.27% Amr::FinalizeInit() 1 0.08999 0.1889 0.279 4.25% Castro::initData() 1 0.1041 0.1794 0.2692 4.10% FabArray::ParallelCopy() 41 0.1643 0.2004 0.2507 3.82% Castro::clean_state() 62 0.1935 0.2201 0.2442 3.71% Castro::expand_state() 10 0.1992 0.2071 0.2181 3.32% Castro::computeInitialDt() 2 0.009978 0.1074 0.1976 3.01% FabArray::ParallelCopy_finish() 41 0.09768 0.141 0.1939 2.95% Castro::do_old_sources() 10 0.1545 0.1604 0.1671 2.54% Castro::computeTemp() 63 0.1039 0.1227 0.1397 2.13% Castro::do_new_sources() 10 0.08675 0.1094 0.1365 2.08% amrex::Copy() 193 0.084 0.1121 0.1353 2.06% Castro::initialize_advance() 10 0.07927 0.1007 0.1171 1.78% FabArray::setVal() 143 0.06646 0.08656 0.1054 1.60% Castro::reset_internal_energy(MultiFab) 63 0.07344 0.08585 0.09744 1.48% Castro::normalize_species() 62 0.07935 0.08753 0.09683 1.47% Castro::reset_internal_energy(Fab) 1008 0.07285 0.08519 0.09668 1.47% Castro::post_init() 1 0.07672 0.08317 0.08878 1.35% Castro::construct_new_source() 50 0.04258 0.0595 0.07831 1.19% StateDataPhysBCFunct::() 41 0.05867 0.06609 0.07636 1.16% StateData::FillBoundary(geom) 41 0.05848 0.0659 0.07617 1.16% Castro::finalize_do_advance() 10 0.02099 0.0486 0.07338 1.12% Castro::construct_new_gravity_source() 10 0.03479 0.05067 0.06846 1.04% FabArray::ParallelCopy_nowait() 41 0.05646 0.05927 0.06649 1.01% Amr::writePlotFile() 2 0.05497 0.05846 0.0631 0.96% Gravity::interpolate_monopole_grav() 21 0.03724 0.04219 0.04734 0.72% Castro::post_timestep() 10 0.02682 0.02956 0.03331 0.51% VisMF::Write(FabArray) 2 0.01218 0.01734 0.0329 0.50% Castro::Castro() 1 0.01203 0.02324 0.03082 0.47% Castro::initMFs() 1 0.008723 0.01817 0.02255 0.34% Castro::check_for_nan() 20 0.01891 0.02013 0.02181 0.33% MultiFab::contains_nan() 20 0.01888 0.02008 0.02176 0.33% DistributionMapping::SFCProcessorMapDoIt() 1 4.26e-05 0.01086 0.02039 0.31% DistributionMapping::LeastUsedCPUs() 1 3.587e-05 0.01085 0.02039 0.31% FabArray::setDomainBndry() 41 0.01234 0.01469 0.01798 0.27% Castro::apply_source_to_state() 20 0.01422 0.01577 0.01697 0.26% FabArray::Saxpy() 20 0.01417 0.01572 0.01691 0.26% AmrLevel::AmrLevel(dm) 1 0.007317 0.01432 0.01667 0.25% StateData::define() 4 0.0073 0.0143 0.01665 0.25% Castro::computeNewDt() 9 0.01591 0.01596 0.01599 0.24% Castro::enforce_min_density() 62 0.01078 0.01171 0.01503 0.23% Other 252 0.03253 0.03982 0.05788 0.88% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 20 B 24 B 28 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 12 MiB 13 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8626 KiB 8649 KiB 8657 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6616 KiB 6629 KiB 6641 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7112 KiB 7128 KiB 7139 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4488 KiB 4503 KiB 4517 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 203 KiB 214 KiB 228 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 10 KiB 15 KiB 22 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2745 KiB 2751 KiB 2756 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 244 KiB 256 KiB 272 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 39 KiB 46 KiB 57 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2020 KiB 2025 KiB 2027 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 80 KiB 81 KiB 83 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 70 KiB 76 KiB 80 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.06-22-g1d307c2c661a-dirty) finalized