Initializing AMReX (25.06-22-g1d307c2c661a-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.06-22-g1d307c2c661a-dirty) initialized Starting run at 05:17:32 UTC on 2025-09-03. Successfully read inputs file ... Castro git describe: 25.08-15-gbe8cc1969 AMReX git describe: 25.06-22-g1d307c2c6-dirty Microphysics git describe: 25.09 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014761928 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.355923752 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.342834312 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.316765289 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.315745107 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.364061647 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.303779594 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.294033329 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.295174628 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.296391721 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.295778056 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.0073807 seconds Ending run at 05:17:35 UTC on 2025-09-03. Run time = 3.357180219 Run time without initialization = 3.193262416 Average number of zones advanced per microsecond: 0.821 Average number of zones advanced per microsecond per rank: 0.103 TinyProfiler total time across processes [min...avg...max]: 3.3558 ... 3.3565 ... 3.3572 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1591 2.2231 2.2820 67.97% Gravity::make_radial_gravity() 21 0.2857 0.2943 0.3122 9.30% check_for_negative_density() 10 0.03457 0.1014 0.1727 5.14% Castro::initData() 1 0.03699 0.07103 0.1009 3.01% FabArray::ParallelCopy_finish() 41 0.04008 0.05713 0.09849 2.93% Castro::estTimeStep() 21 0.02338 0.05809 0.0947 2.82% amrex::Copy() 193 0.06168 0.07851 0.08713 2.60% FabArray::setVal() 143 0.05257 0.06573 0.07151 2.13% FabArray::ParallelCopy_nowait() 41 0.03534 0.04282 0.05531 1.65% Castro::reset_internal_energy(Fab) 1008 0.04375 0.04591 0.04955 1.48% Castro::normalize_species() 62 0.04465 0.04544 0.04813 1.43% FillPatchIterator::Initialize 41 0.02743 0.03291 0.03848 1.15% StateData::FillBoundary(geom) 41 0.02779 0.03113 0.03496 1.04% Gravity::interpolate_monopole_grav() 21 0.02636 0.02668 0.02703 0.81% Castro::construct_new_gravity_source() 10 0.02343 0.02475 0.02667 0.79% Castro::computeTemp() 63 0.01762 0.01887 0.02347 0.70% Castro::initialize_do_advance() 10 0.0115 0.01633 0.01795 0.53% Castro::initialize_advance() 10 0.005297 0.0107 0.01361 0.41% FabArray::Saxpy() 20 0.01049 0.0124 0.01356 0.40% Castro::enforce_min_density() 62 0.005871 0.007042 0.01342 0.40% MultiFab::contains_nan() 20 0.01088 0.01163 0.01319 0.39% VisMF::Write(FabArray) 2 0.009267 0.00979 0.0131 0.39% FabArray::setDomainBndry() 41 0.007102 0.01024 0.01235 0.37% Amr::writePlotFile() 2 0.00748 0.009564 0.009934 0.30% Castro::construct_old_gravity_source() 10 0.006981 0.009375 0.009885 0.29% Castro::initMFs() 1 0.006537 0.006876 0.008576 0.26% Castro::construct_new_source() 50 0.005438 0.005871 0.006113 0.18% main() 1 0.00398 0.00427 0.004682 0.14% Gravity::get_new_grav_vector() 11 0.002771 0.003471 0.003813 0.11% Amr::coarseTimeStep() 10 0.0009317 0.002013 0.002708 0.08% Gravity::get_old_grav_vector() 10 0.00148 0.002015 0.002497 0.07% Castro::finalize_do_advance() 10 0.0005379 0.001174 0.001569 0.05% AmrLevel::FillPatch() 41 0.0008028 0.001086 0.001243 0.04% Amr::timeStep() 10 0.0001419 0.0001811 0.0003767 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002677 0.0002855 0.0003021 0.01% Castro::do_advance_ctu() 10 0.0001482 0.0001779 0.0002104 0.01% Castro::clean_state() 62 0.0001404 0.0001585 0.0001716 0.01% StateDataPhysBCFunct::() 41 0.0001071 0.0001162 0.0001395 0.00% FillPatchIterator::FillFromLevel0() 41 9.139e-05 0.0001107 0.0001344 0.00% FabArray::ParallelCopy() 41 7.891e-05 9.661e-05 0.0001144 0.00% Castro::do_old_sources() 10 7.378e-05 9.133e-05 0.0001138 0.00% Castro::Castro() 1 6.144e-05 8.61e-05 0.0001119 0.00% FillPatchSingleLevel 41 6.317e-05 7.235e-05 8.905e-05 0.00% Amr::FinalizeInit() 1 3.188e-06 1.386e-05 8.105e-05 0.00% Castro::construct_old_source() 50 4.909e-05 6.574e-05 7.687e-05 0.00% Castro::do_new_sources() 10 5.717e-05 6.068e-05 7.011e-05 0.00% Amr::defBaseLevel() 1 4.655e-05 5.718e-05 6.792e-05 0.00% Castro::apply_source_to_state() 20 4.346e-05 5.324e-05 6.742e-05 0.00% Castro::advance() 10 3.219e-05 4.691e-05 6.144e-05 0.00% Castro::subcycle_advance_ctu() 10 4.064e-05 4.825e-05 5.833e-05 0.00% Castro::construct_old_gravity() 10 3.77e-05 4.282e-05 5.232e-05 0.00% Castro::construct_new_gravity() 10 3.064e-05 3.639e-05 4.368e-05 0.00% Castro::check_for_nan() 20 2.431e-05 2.59e-05 2.83e-05 0.00% Castro::expand_state() 10 1.981e-05 2.373e-05 2.682e-05 0.00% Castro::post_timestep() 10 1.398e-05 1.62e-05 2.065e-05 0.00% Castro::post_init() 1 1.497e-05 1.65e-05 1.855e-05 0.00% Castro::computeNewDt() 9 8.82e-06 9.795e-06 1.123e-05 0.00% Amr::InitializeInit() 1 2.638e-06 3.987e-06 6.598e-06 0.00% Amr::init() 1 2.191e-06 3.09e-06 5.699e-06 0.00% Castro::computeInitialDt() 2 3.172e-06 3.417e-06 3.921e-06 0.00% Amr::initialInit() 1 1.53e-06 2.001e-06 2.63e-06 0.00% Other 199 0.009297 0.01293 0.01471 0.44% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.356 3.357 3.357 100.00% Amr::coarseTimeStep() 10 3.181 3.181 3.181 94.76% Amr::timeStep() 10 3.169 3.17 3.171 94.44% Castro::advance() 10 3.153 3.154 3.154 93.95% Castro::subcycle_advance_ctu() 10 3.077 3.082 3.098 92.27% Castro::do_advance_ctu() 10 3.077 3.082 3.097 92.26% Castro::construct_ctu_hydro_source() 10 2.336 2.346 2.353 70.08% Gravity::make_radial_gravity() 21 0.3012 0.3105 0.3251 9.68% AmrLevel::FillPatch() 41 0.1875 0.2073 0.2198 6.55% Gravity::get_new_grav_vector() 11 0.2073 0.2085 0.2094 6.24% FillPatchIterator::Initialize 41 0.1547 0.1747 0.1966 5.86% Castro::construct_old_gravity() 10 0.176 0.1821 0.1942 5.79% Gravity::get_old_grav_vector() 10 0.1753 0.1815 0.1937 5.77% Castro::construct_new_gravity() 10 0.1856 0.1862 0.1875 5.58% check_for_negative_density() 10 0.03457 0.1014 0.1727 5.14% Castro::initialize_do_advance() 10 0.1563 0.1625 0.1661 4.95% Amr::init() 1 0.1622 0.1633 0.1636 4.87% FillPatchIterator::FillFromLevel0() 41 0.1157 0.1316 0.1621 4.83% FillPatchSingleLevel 41 0.1156 0.1315 0.162 4.83% Amr::initialInit() 1 0.1472 0.1488 0.1492 4.44% FabArray::ParallelCopy() 41 0.0861 0.1001 0.134 3.99% Castro::clean_state() 62 0.112 0.1169 0.1299 3.87% Amr::InitializeInit() 1 0.05906 0.09288 0.123 3.66% Amr::defBaseLevel() 1 0.05905 0.09288 0.123 3.66% Castro::expand_state() 10 0.1024 0.1092 0.1187 3.53% Castro::do_old_sources() 10 0.1038 0.1078 0.1147 3.42% Castro::initData() 1 0.0409 0.07494 0.1049 3.12% FabArray::ParallelCopy_finish() 41 0.04008 0.05713 0.09849 2.93% Castro::estTimeStep() 21 0.02338 0.05809 0.0947 2.82% Amr::FinalizeInit() 1 0.0262 0.05593 0.0901 2.68% amrex::Copy() 193 0.06168 0.07851 0.08713 2.60% Castro::initialize_advance() 10 0.05224 0.06842 0.07393 2.20% FabArray::setVal() 143 0.05257 0.06573 0.07151 2.13% Castro::computeTemp() 63 0.06164 0.06507 0.06893 2.05% Castro::do_new_sources() 10 0.05964 0.06299 0.06783 2.02% Castro::computeInitialDt() 2 0.002078 0.03189 0.06598 1.97% FabArray::ParallelCopy_nowait() 41 0.03546 0.04292 0.05542 1.65% Castro::reset_internal_energy(MultiFab) 63 0.04402 0.0462 0.04984 1.48% Castro::reset_internal_energy(Fab) 1008 0.04375 0.04591 0.04955 1.48% Castro::normalize_species() 62 0.04465 0.04544 0.04813 1.43% StateDataPhysBCFunct::() 41 0.0279 0.03124 0.03508 1.05% StateData::FillBoundary(geom) 41 0.02779 0.03113 0.03496 1.04% Castro::construct_new_source() 50 0.02928 0.03062 0.03275 0.98% Gravity::interpolate_monopole_grav() 21 0.02636 0.02668 0.02703 0.81% Castro::construct_new_gravity_source() 10 0.02343 0.02475 0.02667 0.79% Castro::post_init() 1 0.02312 0.02354 0.02366 0.70% Castro::finalize_do_advance() 10 0.01255 0.01879 0.02273 0.68% Amr::writePlotFile() 2 0.02185 0.02195 0.02239 0.67% Castro::post_timestep() 10 0.01516 0.01576 0.01641 0.49% Castro::apply_source_to_state() 20 0.01053 0.01245 0.01362 0.41% FabArray::Saxpy() 20 0.01049 0.0124 0.01356 0.40% Castro::enforce_min_density() 62 0.005871 0.007042 0.01342 0.40% Castro::check_for_nan() 20 0.01091 0.01166 0.01322 0.39% MultiFab::contains_nan() 20 0.01088 0.01163 0.01319 0.39% VisMF::Write(FabArray) 2 0.009267 0.00979 0.0131 0.39% FabArray::setDomainBndry() 41 0.007102 0.01024 0.01235 0.37% Castro::Castro() 1 0.01065 0.01112 0.01194 0.36% Castro::construct_old_source() 50 0.00703 0.009441 0.009954 0.30% Castro::construct_old_gravity_source() 10 0.006981 0.009375 0.009885 0.29% Castro::computeNewDt() 9 0.008585 0.008599 0.008623 0.26% Castro::initMFs() 1 0.006537 0.006876 0.008576 0.26% Other 199 0.01924 0.02443 0.02739 0.82% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 29 B 38 B 66 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8658 KiB 8668 KiB 8671 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6786 KiB 6788 KiB 6788 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7132 KiB 7139 KiB 7140 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4579 KiB 4586 KiB 4607 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 209 KiB 230 KiB 247 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 16 KiB 17 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2815 KiB 2817 KiB 2819 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 228 KiB 235 KiB 247 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 39 KiB 44 KiB 61 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2029 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 79 KiB 79 KiB 80 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 67 KiB 69 KiB 74 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.06-22-g1d307c2c661a-dirty) finalized