Initializing AMReX (25.06-22-g1d307c2c661a-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.06-22-g1d307c2c661a-dirty) initialized Starting run at 05:17:40 UTC on 2025-09-04. Successfully read inputs file ... Castro git describe: 25.08-15-gbe8cc1969 AMReX git describe: 25.06-22-g1d307c2c6-dirty Microphysics git describe: 25.09 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014053907 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.340492817 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.347088213 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.315242233 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.316699497 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.357446633 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.305035839 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.296808733 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.297744974 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.295606107 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.297124355 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.00764539 seconds Ending run at 05:17:43 UTC on 2025-09-04. Run time = 3.347310879 Run time without initialization = 3.182655872 Average number of zones advanced per microsecond: 0.824 Average number of zones advanced per microsecond per rank: 0.103 TinyProfiler total time across processes [min...avg...max]: 3.3450 ... 3.3466 ... 3.3477 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1898 2.2373 2.2972 68.62% Gravity::make_radial_gravity() 21 0.2836 0.2936 0.309 9.23% check_for_negative_density() 10 0.02006 0.08379 0.1309 3.91% Castro::initData() 1 0.03723 0.07202 0.1019 3.05% Castro::estTimeStep() 21 0.02108 0.0571 0.09538 2.85% FabArray::ParallelCopy_finish() 41 0.03691 0.05053 0.09353 2.79% amrex::Copy() 193 0.06553 0.07997 0.08961 2.68% FabArray::setVal() 143 0.05198 0.06539 0.07118 2.13% Castro::reset_internal_energy(Fab) 1008 0.04346 0.04584 0.04839 1.45% Castro::normalize_species() 62 0.04509 0.04623 0.04718 1.41% FabArray::ParallelCopy_nowait() 41 0.03546 0.04176 0.0439 1.31% FillPatchIterator::Initialize 41 0.02781 0.0333 0.03597 1.07% StateData::FillBoundary(geom) 41 0.02913 0.03139 0.03425 1.02% Gravity::interpolate_monopole_grav() 21 0.02651 0.02677 0.02716 0.81% Castro::construct_new_gravity_source() 10 0.02333 0.02475 0.0265 0.79% Castro::computeTemp() 63 0.01765 0.01816 0.0189 0.56% Castro::initialize_do_advance() 10 0.01167 0.01681 0.01816 0.54% FabArray::Saxpy() 20 0.01074 0.01268 0.014 0.42% Castro::initialize_advance() 10 0.005279 0.01052 0.01309 0.39% FabArray::setDomainBndry() 41 0.007223 0.01072 0.01266 0.38% MultiFab::contains_nan() 20 0.01009 0.01123 0.01234 0.37% Amr::writePlotFile() 2 0.007403 0.01006 0.01202 0.36% VisMF::Write(FabArray) 2 0.008666 0.009411 0.01188 0.35% Castro::construct_old_gravity_source() 10 0.007155 0.009718 0.0105 0.31% Castro::initMFs() 1 0.006675 0.007075 0.008416 0.25% Castro::construct_new_source() 50 0.005685 0.006007 0.006253 0.19% main() 1 0.003135 0.004691 0.005355 0.16% Gravity::get_new_grav_vector() 11 0.002877 0.003489 0.003933 0.12% Gravity::get_old_grav_vector() 10 0.00168 0.002151 0.002515 0.08% Amr::coarseTimeStep() 10 0.001 0.001399 0.002363 0.07% AmrLevel::FillPatch() 41 0.0008652 0.001169 0.001388 0.04% Castro::finalize_do_advance() 10 0.0005557 0.00108 0.001264 0.04% Amr::timeStep() 10 0.0001379 0.0001922 0.0004306 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002855 0.000298 0.0003265 0.01% Castro::do_advance_ctu() 10 0.0001535 0.0001717 0.0002177 0.01% Castro::clean_state() 62 0.0001404 0.0001633 0.0001813 0.01% StateDataPhysBCFunct::() 41 9.419e-05 0.00012 0.0001431 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001048 0.0001198 0.0001373 0.00% FabArray::ParallelCopy() 41 8.472e-05 9.781e-05 0.0001099 0.00% Castro::Castro() 1 4.868e-05 8.482e-05 0.0001096 0.00% Castro::do_old_sources() 10 8.412e-05 9.576e-05 0.0001065 0.00% FillPatchSingleLevel 41 7.017e-05 7.611e-05 9.071e-05 0.00% Amr::FinalizeInit() 1 2.814e-06 1.427e-05 8.163e-05 0.00% Castro::construct_old_source() 50 5.997e-05 6.865e-05 7.623e-05 0.00% Castro::do_new_sources() 10 5.754e-05 6.271e-05 6.706e-05 0.00% Castro::apply_source_to_state() 20 4.953e-05 5.628e-05 6.641e-05 0.00% Castro::subcycle_advance_ctu() 10 4.242e-05 5.093e-05 6.247e-05 0.00% Castro::advance() 10 4.185e-05 5.001e-05 5.747e-05 0.00% Amr::defBaseLevel() 1 4.143e-05 4.743e-05 5.322e-05 0.00% Castro::construct_old_gravity() 10 3.669e-05 4.135e-05 4.935e-05 0.00% Castro::construct_new_gravity() 10 3.049e-05 3.526e-05 4.528e-05 0.00% Castro::expand_state() 10 2.32e-05 2.788e-05 3.597e-05 0.00% Castro::check_for_nan() 20 2.457e-05 2.64e-05 2.734e-05 0.00% Castro::post_init() 1 1.511e-05 1.779e-05 2.231e-05 0.00% Castro::post_timestep() 10 1.38e-05 1.695e-05 2.073e-05 0.00% Amr::init() 1 1.456e-06 4.554e-06 1.921e-05 0.00% Castro::computeNewDt() 9 8.918e-06 9.884e-06 1.108e-05 0.00% Amr::InitializeInit() 1 2.61e-06 3.357e-06 5.489e-06 0.00% Castro::computeInitialDt() 2 2.981e-06 3.424e-06 4.132e-06 0.00% Amr::initialInit() 1 1.649e-06 1.895e-06 2.103e-06 0.00% Other 261 0.01612 0.01851 0.02068 0.62% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.345 3.347 3.348 100.00% Amr::coarseTimeStep() 10 3.17 3.17 3.17 94.68% Amr::timeStep() 10 3.158 3.159 3.159 94.37% Castro::advance() 10 3.142 3.143 3.143 93.89% Castro::subcycle_advance_ctu() 10 3.068 3.072 3.087 92.21% Castro::do_advance_ctu() 10 3.068 3.072 3.087 92.21% Castro::construct_ctu_hydro_source() 10 2.339 2.342 2.347 70.10% Gravity::make_radial_gravity() 21 0.3013 0.3101 0.3227 9.64% AmrLevel::FillPatch() 41 0.1916 0.2013 0.2193 6.55% Gravity::get_new_grav_vector() 11 0.205 0.206 0.2069 6.18% Castro::construct_old_gravity() 10 0.1805 0.186 0.196 5.86% Gravity::get_old_grav_vector() 10 0.1798 0.1853 0.1954 5.84% FillPatchIterator::Initialize 41 0.1602 0.1682 0.1938 5.79% Castro::construct_new_gravity() 10 0.1827 0.1835 0.184 5.50% Castro::initialize_do_advance() 10 0.1616 0.1672 0.1718 5.13% Amr::init() 1 0.1637 0.1641 0.1645 4.91% FillPatchIterator::FillFromLevel0() 41 0.1136 0.1242 0.1587 4.74% FillPatchSingleLevel 41 0.1135 0.1241 0.1586 4.74% Amr::initialInit() 1 0.149 0.1498 0.1503 4.49% check_for_negative_density() 10 0.02006 0.08379 0.1309 3.91% FabArray::ParallelCopy() 41 0.08022 0.09251 0.1292 3.86% Castro::expand_state() 10 0.1074 0.1135 0.125 3.73% Amr::InitializeInit() 1 0.05865 0.09336 0.1234 3.69% Amr::defBaseLevel() 1 0.05865 0.09335 0.1234 3.69% Castro::clean_state() 62 0.1129 0.1161 0.1202 3.59% Castro::initData() 1 0.04124 0.07584 0.106 3.17% Castro::do_old_sources() 10 0.09334 0.09572 0.09924 2.96% Castro::estTimeStep() 21 0.02108 0.0571 0.09538 2.85% FabArray::ParallelCopy_finish() 41 0.03691 0.05053 0.09353 2.79% Amr::FinalizeInit() 1 0.02637 0.05649 0.09132 2.73% amrex::Copy() 193 0.06553 0.07997 0.08961 2.68% Castro::initialize_advance() 10 0.0519 0.06731 0.07189 2.15% FabArray::setVal() 143 0.05198 0.06539 0.07118 2.13% Castro::do_new_sources() 10 0.06062 0.06416 0.06952 2.08% Castro::computeTemp() 63 0.06141 0.0643 0.06759 2.02% Castro::computeInitialDt() 2 0.002138 0.03231 0.06707 2.00% Castro::reset_internal_energy(MultiFab) 63 0.04375 0.04613 0.04869 1.45% Castro::reset_internal_energy(Fab) 1008 0.04346 0.04584 0.04839 1.45% Castro::normalize_species() 62 0.04509 0.04623 0.04718 1.41% FabArray::ParallelCopy_nowait() 41 0.0356 0.04188 0.044 1.31% StateDataPhysBCFunct::() 41 0.02925 0.03151 0.03438 1.03% StateData::FillBoundary(geom) 41 0.02913 0.03139 0.03425 1.02% Castro::construct_new_source() 50 0.02932 0.03076 0.03272 0.98% Gravity::interpolate_monopole_grav() 21 0.02651 0.02677 0.02716 0.81% Castro::construct_new_gravity_source() 10 0.02333 0.02475 0.0265 0.79% Castro::post_init() 1 0.02326 0.02367 0.02379 0.71% Amr::writePlotFile() 2 0.0219 0.02204 0.02248 0.67% Castro::finalize_do_advance() 10 0.01159 0.01736 0.02122 0.63% Castro::post_timestep() 10 0.01512 0.01587 0.01636 0.49% Castro::apply_source_to_state() 20 0.01079 0.01274 0.01406 0.42% FabArray::Saxpy() 20 0.01074 0.01268 0.014 0.42% FabArray::setDomainBndry() 41 0.007223 0.01072 0.01266 0.38% Castro::check_for_nan() 20 0.01012 0.01125 0.01237 0.37% MultiFab::contains_nan() 20 0.01009 0.01123 0.01234 0.37% Castro::Castro() 1 0.01067 0.01123 0.01207 0.36% VisMF::Write(FabArray) 2 0.008666 0.009411 0.01188 0.35% Castro::construct_old_source() 50 0.007216 0.009786 0.01058 0.32% Castro::construct_old_gravity_source() 10 0.007155 0.009718 0.0105 0.31% Castro::computeNewDt() 9 0.008504 0.008524 0.008554 0.26% Castro::initMFs() 1 0.006675 0.007075 0.008416 0.25% Other 261 0.02619 0.02956 0.03289 0.98% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 30 B 39 B 65 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 15 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8659 KiB 8668 KiB 8671 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6776 KiB 6784 KiB 6788 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7130 KiB 7139 KiB 7142 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4579 KiB 4585 KiB 4610 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 215 KiB 227 KiB 250 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 14 KiB 16 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2813 KiB 2816 KiB 2817 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 229 KiB 236 KiB 246 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 37 KiB 42 KiB 61 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2029 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 78 KiB 79 KiB 79 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 69 KiB 71 KiB 75 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.06-22-g1d307c2c661a-dirty) finalized