Initializing AMReX (25.06-22-g1d307c2c661a-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.06-22-g1d307c2c661a-dirty) initialized Starting run at 05:17:37 UTC on 2025-09-05. Successfully read inputs file ... Castro git describe: 25.08-16-g5f039d4a2 AMReX git describe: 25.06-22-g1d307c2c6-dirty Microphysics git describe: 25.09 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015523643 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.346391159 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.340607846 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.315451128 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.318054562 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.361841945 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.30769165 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.298613438 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.299689745 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.298764502 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.298906746 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007497026 seconds Ending run at 05:17:40 UTC on 2025-09-05. Run time = 3.367675941 Run time without initialization = 3.198724206 Average number of zones advanced per microsecond: 0.820 Average number of zones advanced per microsecond per rank: 0.102 TinyProfiler total time across processes [min...avg...max]: 3.3659 ... 3.3669 ... 3.3678 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1512 2.2411 2.3186 68.85% Gravity::make_radial_gravity() 21 0.2933 0.3031 0.3168 9.41% check_for_negative_density() 10 0.01925 0.1017 0.1907 5.66% Castro::initData() 1 0.03925 0.07294 0.1013 3.01% Castro::estTimeStep() 21 0.02059 0.05589 0.09308 2.76% FabArray::ParallelCopy_finish() 41 0.03775 0.04923 0.08764 2.60% amrex::Copy() 193 0.06309 0.07614 0.08457 2.51% FabArray::setVal() 143 0.0534 0.06564 0.072 2.14% Castro::reset_internal_energy(Fab) 1008 0.04008 0.04423 0.04886 1.45% Castro::normalize_species() 62 0.04502 0.04593 0.04707 1.40% FabArray::ParallelCopy_nowait() 41 0.03487 0.04057 0.04207 1.25% FillPatchIterator::Initialize 41 0.02707 0.03201 0.03486 1.04% StateData::FillBoundary(geom) 41 0.0298 0.03096 0.03309 0.98% Gravity::interpolate_monopole_grav() 21 0.02657 0.02688 0.02725 0.81% Castro::construct_new_gravity_source() 10 0.02308 0.02457 0.02643 0.78% Castro::computeTemp() 63 0.01675 0.01775 0.01915 0.57% Castro::initialize_do_advance() 10 0.01161 0.01646 0.0181 0.54% FabArray::Saxpy() 20 0.01059 0.01266 0.01405 0.42% Castro::initialize_advance() 10 0.005251 0.01061 0.01369 0.41% Amr::writePlotFile() 2 0.008015 0.01082 0.01305 0.39% MultiFab::contains_nan() 20 0.01077 0.0116 0.01274 0.38% VisMF::Write(FabArray) 2 0.00837 0.009792 0.01265 0.38% Castro::construct_old_gravity_source() 10 0.006993 0.009564 0.01006 0.30% FabArray::setDomainBndry() 41 0.007037 0.009228 0.009836 0.29% Castro::initMFs() 1 0.006615 0.007053 0.008047 0.24% Castro::construct_new_source() 50 0.005612 0.006015 0.006438 0.19% main() 1 0.003714 0.00409 0.004363 0.13% Gravity::get_new_grav_vector() 11 0.002595 0.003303 0.003747 0.11% Amr::coarseTimeStep() 10 0.001364 0.002073 0.003598 0.11% Gravity::get_old_grav_vector() 10 0.001447 0.002008 0.00257 0.08% Castro::finalize_do_advance() 10 0.0004864 0.00112 0.001251 0.04% AmrLevel::FillPatch() 41 0.0007234 0.0009377 0.001036 0.03% Amr::timeStep() 10 0.0001351 0.0001975 0.0004787 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002753 0.0002843 0.0002994 0.01% Castro::do_advance_ctu() 10 0.0001403 0.0001659 0.0001838 0.01% Castro::clean_state() 62 0.0001455 0.000161 0.0001718 0.01% StateDataPhysBCFunct::() 41 0.0001014 0.000117 0.0001392 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001 0.0001075 0.0001151 0.00% FabArray::ParallelCopy() 41 7.898e-05 9.202e-05 0.0001099 0.00% Castro::do_old_sources() 10 6.771e-05 9.185e-05 0.000105 0.00% Castro::Castro() 1 5.19e-05 6.962e-05 9.359e-05 0.00% Castro::do_new_sources() 10 4.949e-05 6.23e-05 8.219e-05 0.00% Amr::FinalizeInit() 1 3.262e-06 1.382e-05 8.102e-05 0.00% Castro::construct_old_source() 50 5.195e-05 6.716e-05 7.959e-05 0.00% FillPatchSingleLevel 41 6.288e-05 6.986e-05 7.437e-05 0.00% Castro::apply_source_to_state() 20 3.5e-05 5.452e-05 6.786e-05 0.00% Castro::advance() 10 4.097e-05 4.875e-05 6.664e-05 0.00% Amr::defBaseLevel() 1 4.613e-05 5.315e-05 6.015e-05 0.00% Castro::construct_old_gravity() 10 3.191e-05 3.893e-05 5.165e-05 0.00% Castro::subcycle_advance_ctu() 10 4.092e-05 4.641e-05 5.009e-05 0.00% Castro::construct_new_gravity() 10 2.981e-05 3.614e-05 4.457e-05 0.00% Castro::check_for_nan() 20 2.351e-05 2.708e-05 3.344e-05 0.00% Castro::expand_state() 10 2.091e-05 2.432e-05 2.987e-05 0.00% Castro::post_init() 1 1.443e-05 1.729e-05 2.175e-05 0.00% Castro::post_timestep() 10 1.397e-05 1.631e-05 1.899e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.014e-05 1.245e-05 1.504e-05 0.00% Castro::computeNewDt() 9 8.108e-06 9.591e-06 1.022e-05 0.00% Amr::InitializeInit() 1 2.631e-06 3.445e-06 5.847e-06 0.00% Castro::computeInitialDt() 2 2.671e-06 3.271e-06 3.779e-06 0.00% Amr::init() 1 2.153e-06 2.601e-06 3.682e-06 0.00% Amr::initialInit() 1 1.584e-06 1.915e-06 2.111e-06 0.00% Other 260 0.01619 0.01896 0.02158 0.64% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.366 3.367 3.368 100.00% Amr::coarseTimeStep() 10 3.187 3.187 3.187 94.63% Amr::timeStep() 10 3.174 3.175 3.176 94.31% Castro::advance() 10 3.159 3.16 3.16 93.83% Castro::subcycle_advance_ctu() 10 3.083 3.089 3.104 92.16% Castro::do_advance_ctu() 10 3.083 3.089 3.104 92.16% Castro::construct_ctu_hydro_source() 10 2.36 2.364 2.368 70.32% Gravity::make_radial_gravity() 21 0.3083 0.3181 0.3299 9.80% AmrLevel::FillPatch() 41 0.1809 0.1937 0.2118 6.29% Gravity::get_new_grav_vector() 11 0.2074 0.2091 0.211 6.26% Castro::construct_old_gravity() 10 0.1838 0.1893 0.1982 5.89% Gravity::get_old_grav_vector() 10 0.183 0.1886 0.1976 5.87% check_for_negative_density() 10 0.01925 0.1017 0.1907 5.66% FillPatchIterator::Initialize 41 0.1511 0.1625 0.1874 5.56% Castro::construct_new_gravity() 10 0.1827 0.1837 0.185 5.49% Amr::init() 1 0.1673 0.168 0.1686 5.01% Castro::initialize_do_advance() 10 0.1553 0.1622 0.1684 5.00% FillPatchIterator::FillFromLevel0() 41 0.1112 0.1212 0.1533 4.55% FillPatchSingleLevel 41 0.1111 0.1211 0.1532 4.55% Amr::initialInit() 1 0.1517 0.1525 0.1531 4.55% Amr::InitializeInit() 1 0.06037 0.09442 0.1229 3.65% Amr::defBaseLevel() 1 0.06036 0.09441 0.1229 3.65% Castro::expand_state() 10 0.1024 0.109 0.1228 3.65% FabArray::ParallelCopy() 41 0.07993 0.08999 0.1227 3.64% Castro::clean_state() 62 0.1077 0.1138 0.1205 3.58% Castro::initData() 1 0.0434 0.07686 0.1053 3.13% Castro::do_old_sources() 10 0.08895 0.09275 0.09701 2.88% Castro::estTimeStep() 21 0.02059 0.05589 0.09308 2.76% Amr::FinalizeInit() 1 0.02915 0.05804 0.09241 2.74% FabArray::ParallelCopy_finish() 41 0.03775 0.04923 0.08764 2.60% amrex::Copy() 193 0.06309 0.07614 0.08457 2.51% Castro::initialize_advance() 10 0.05192 0.06757 0.07352 2.18% FabArray::setVal() 143 0.0534 0.06564 0.072 2.14% Castro::do_new_sources() 10 0.05915 0.06362 0.06974 2.07% Castro::computeTemp() 63 0.05711 0.06226 0.0683 2.03% Castro::computeInitialDt() 2 0.002251 0.03099 0.06548 1.94% Castro::reset_internal_energy(MultiFab) 63 0.04036 0.04451 0.04915 1.46% Castro::reset_internal_energy(Fab) 1008 0.04008 0.04423 0.04886 1.45% Castro::normalize_species() 62 0.04502 0.04593 0.04707 1.40% FabArray::ParallelCopy_nowait() 41 0.03499 0.04067 0.04217 1.25% StateDataPhysBCFunct::() 41 0.0299 0.03108 0.03319 0.99% StateData::FillBoundary(geom) 41 0.0298 0.03096 0.03309 0.98% Castro::construct_new_source() 50 0.02901 0.03059 0.03273 0.97% Gravity::interpolate_monopole_grav() 21 0.02657 0.02688 0.02725 0.81% Castro::post_init() 1 0.02643 0.02663 0.02681 0.80% Castro::construct_new_gravity_source() 10 0.02308 0.02457 0.02643 0.78% Amr::writePlotFile() 2 0.02286 0.02314 0.02328 0.69% Castro::finalize_do_advance() 10 0.01109 0.01767 0.02196 0.65% Castro::post_timestep() 10 0.01471 0.01555 0.01627 0.48% Castro::apply_source_to_state() 20 0.01063 0.01272 0.01412 0.42% FabArray::Saxpy() 20 0.01059 0.01266 0.01405 0.42% Castro::check_for_nan() 20 0.01079 0.01163 0.01276 0.38% MultiFab::contains_nan() 20 0.01077 0.0116 0.01274 0.38% VisMF::Write(FabArray) 2 0.00837 0.009792 0.01265 0.38% Castro::Castro() 1 0.0103 0.01093 0.01185 0.35% Castro::construct_old_source() 50 0.007045 0.009631 0.01014 0.30% Castro::construct_old_gravity_source() 10 0.006993 0.009564 0.01006 0.30% FabArray::setDomainBndry() 41 0.007037 0.009228 0.009836 0.29% Castro::computeNewDt() 9 0.00836 0.008372 0.008389 0.25% Castro::initMFs() 1 0.006615 0.007053 0.008047 0.24% AmrLevel::AmrLevel(dm) 1 0.005429 0.005892 0.006524 0.19% Other 260 0.02084 0.02451 0.02814 0.84% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 29 B 35 B 41 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 15 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8660 KiB 8670 KiB 8671 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6772 KiB 6779 KiB 6785 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7132 KiB 7140 KiB 7143 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4575 KiB 4583 KiB 4608 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 203 KiB 217 KiB 241 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 14 KiB 17 KiB 21 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2811 KiB 2814 KiB 2815 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 233 KiB 240 KiB 250 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 36 KiB 41 KiB 58 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 79 KiB 79 KiB 80 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 69 KiB 71 KiB 75 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.06-22-g1d307c2c661a-dirty) finalized