Initializing AMReX (25.06-22-g1d307c2c661a-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.06-22-g1d307c2c661a-dirty) initialized Starting run at 05:17:39 UTC on 2025-09-08. Successfully read inputs file ... Castro git describe: 25.09.1-1-g1e755b3cd AMReX git describe: 25.06-22-g1d307c2c6-dirty Microphysics git describe: 25.09 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014792182 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.329127052 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.317597114 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.330608901 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.315501315 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.35952677 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.30847476 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.297263403 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.29607362 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.295531254 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.304056791 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007595859 seconds Ending run at 05:17:42 UTC on 2025-09-08. Run time = 3.355475665 Run time without initialization = 3.166237936 Average number of zones advanced per microsecond: 0.828 Average number of zones advanced per microsecond per rank: 0.103 TinyProfiler total time across processes [min...avg...max]: 3.3535 ... 3.3544 ... 3.3556 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1926 2.2274 2.3000 68.54% Gravity::make_radial_gravity() 21 0.2837 0.2921 0.303 9.03% check_for_negative_density() 10 0.01684 0.09508 0.1318 3.93% Castro::initData() 1 0.0371 0.07374 0.121 3.61% Castro::estTimeStep() 21 0.03035 0.07536 0.1143 3.41% amrex::Copy() 193 0.06437 0.07774 0.08605 2.56% FabArray::ParallelCopy_finish() 41 0.03506 0.04693 0.0828 2.47% FabArray::setVal() 143 0.05521 0.06512 0.07042 2.10% Castro::reset_internal_energy(Fab) 1008 0.0432 0.04557 0.04753 1.42% Castro::normalize_species() 62 0.04474 0.04538 0.0464 1.38% FabArray::ParallelCopy_nowait() 41 0.03544 0.04079 0.04233 1.26% FillPatchIterator::Initialize 41 0.02749 0.03197 0.03458 1.03% StateData::FillBoundary(geom) 41 0.02847 0.03119 0.0345 1.03% Gravity::interpolate_monopole_grav() 21 0.02626 0.02651 0.02691 0.80% Castro::construct_new_gravity_source() 10 0.0233 0.02458 0.02654 0.79% Castro::computeTemp() 63 0.01739 0.01807 0.01847 0.55% Castro::initialize_do_advance() 10 0.01199 0.01595 0.01715 0.51% FabArray::Saxpy() 20 0.0106 0.01253 0.01352 0.40% Castro::initialize_advance() 10 0.005256 0.01051 0.01316 0.39% Amr::writePlotFile() 2 0.007722 0.01054 0.01279 0.38% FabArray::setDomainBndry() 41 0.007165 0.01012 0.01254 0.37% VisMF::Write(FabArray) 2 0.008575 0.009621 0.01221 0.36% MultiFab::contains_nan() 20 0.01023 0.01102 0.01173 0.35% Castro::construct_old_gravity_source() 10 0.007028 0.009528 0.0102 0.30% Castro::initMFs() 1 0.006409 0.007123 0.007951 0.24% Castro::construct_new_source() 50 0.00579 0.006086 0.006382 0.19% main() 1 0.003727 0.004028 0.004255 0.13% Gravity::get_new_grav_vector() 11 0.00291 0.003524 0.003915 0.12% Gravity::get_old_grav_vector() 10 0.001599 0.001974 0.002393 0.07% Amr::coarseTimeStep() 10 0.0008663 0.001328 0.001733 0.05% Castro::finalize_do_advance() 10 0.0005194 0.000977 0.001183 0.04% AmrLevel::FillPatch() 41 0.0007976 0.001014 0.001128 0.03% Amr::timeStep() 10 0.00014 0.0001917 0.0004513 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002711 0.0002891 0.000343 0.01% Castro::do_advance_ctu() 10 0.0001483 0.0001719 0.0002045 0.01% Castro::clean_state() 62 0.0001478 0.000164 0.0002013 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001028 0.0001114 0.0001327 0.00% StateDataPhysBCFunct::() 41 0.0001037 0.0001145 0.0001324 0.00% Castro::do_old_sources() 10 7.871e-05 9.353e-05 0.0001066 0.00% FabArray::ParallelCopy() 41 8.329e-05 9.266e-05 0.0001061 0.00% FillPatchSingleLevel 41 6.152e-05 6.871e-05 8.461e-05 0.00% Castro::construct_old_source() 50 5.44e-05 7.011e-05 8.2e-05 0.00% Castro::do_new_sources() 10 5.564e-05 6.501e-05 7.626e-05 0.00% Castro::apply_source_to_state() 20 4.642e-05 5.653e-05 7.01e-05 0.00% Amr::FinalizeInit() 1 2.916e-06 1.186e-05 6.95e-05 0.00% Castro::Castro() 1 4.754e-05 5.883e-05 6.739e-05 0.00% Castro::advance() 10 4.1e-05 4.77e-05 6.296e-05 0.00% Castro::subcycle_advance_ctu() 10 4.392e-05 4.952e-05 5.787e-05 0.00% Amr::defBaseLevel() 1 4.557e-05 4.957e-05 5.602e-05 0.00% Castro::construct_old_gravity() 10 3.499e-05 4.033e-05 4.966e-05 0.00% Castro::construct_new_gravity() 10 3.126e-05 3.596e-05 4.177e-05 0.00% Castro::expand_state() 10 2.231e-05 2.568e-05 3.191e-05 0.00% Castro::check_for_nan() 20 2.228e-05 2.547e-05 2.722e-05 0.00% Castro::post_timestep() 10 1.377e-05 1.73e-05 2.481e-05 0.00% Castro::post_init() 1 1.471e-05 1.81e-05 2.308e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.089e-05 1.161e-05 1.269e-05 0.00% Castro::computeNewDt() 9 8.281e-06 9.54e-06 1.057e-05 0.00% Amr::InitializeInit() 1 2.819e-06 3.497e-06 6.984e-06 0.00% Castro::computeInitialDt() 2 3.1e-06 3.544e-06 4.204e-06 0.00% Amr::init() 1 1.759e-06 2.228e-06 2.903e-06 0.00% Amr::initialInit() 1 1.567e-06 1.954e-06 2.538e-06 0.00% Other 260 0.01585 0.01905 0.02177 0.65% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.354 3.354 3.356 100.00% Amr::coarseTimeStep() 10 3.154 3.155 3.155 94.01% Amr::timeStep() 10 3.143 3.144 3.144 93.70% Castro::advance() 10 3.127 3.128 3.128 93.22% Castro::subcycle_advance_ctu() 10 3.052 3.057 3.071 91.50% Castro::do_advance_ctu() 10 3.052 3.057 3.07 91.50% Castro::construct_ctu_hydro_source() 10 2.338 2.343 2.346 69.92% Gravity::make_radial_gravity() 21 0.3009 0.3085 0.3164 9.43% AmrLevel::FillPatch() 41 0.1784 0.1932 0.2115 6.30% Gravity::get_new_grav_vector() 11 0.2046 0.206 0.2072 6.17% Amr::init() 1 0.1871 0.1879 0.1887 5.62% Castro::construct_old_gravity() 10 0.1769 0.1819 0.1884 5.62% Gravity::get_old_grav_vector() 10 0.1763 0.1813 0.1878 5.60% FillPatchIterator::Initialize 41 0.1483 0.1615 0.1861 5.54% Castro::construct_new_gravity() 10 0.1801 0.1809 0.1813 5.40% Amr::initialInit() 1 0.1719 0.1729 0.1738 5.18% Castro::initialize_do_advance() 10 0.1552 0.1614 0.1685 5.02% FillPatchIterator::FillFromLevel0() 41 0.1113 0.1194 0.1514 4.51% FillPatchSingleLevel 41 0.1112 0.1193 0.1513 4.51% Amr::InitializeInit() 1 0.05672 0.09511 0.1436 4.28% Amr::defBaseLevel() 1 0.05672 0.09511 0.1436 4.28% check_for_negative_density() 10 0.01684 0.09508 0.1318 3.93% Castro::initData() 1 0.04084 0.0775 0.1253 3.73% Castro::expand_state() 10 0.1017 0.109 0.1208 3.60% FabArray::ParallelCopy() 41 0.07745 0.08793 0.1185 3.53% Castro::clean_state() 62 0.1118 0.1147 0.1167 3.48% Amr::FinalizeInit() 1 0.02954 0.07774 0.1157 3.45% Castro::estTimeStep() 21 0.03035 0.07536 0.1143 3.41% Castro::do_old_sources() 10 0.08876 0.09263 0.09598 2.86% Castro::computeInitialDt() 2 0.00232 0.05089 0.08901 2.65% amrex::Copy() 193 0.06437 0.07774 0.08605 2.56% FabArray::ParallelCopy_finish() 41 0.03506 0.04693 0.0828 2.47% Castro::initialize_advance() 10 0.05358 0.0675 0.07269 2.17% FabArray::setVal() 143 0.05521 0.06512 0.07042 2.10% Castro::do_new_sources() 10 0.06105 0.06407 0.06917 2.06% Castro::computeTemp() 63 0.06086 0.06392 0.06629 1.98% Castro::reset_internal_energy(MultiFab) 63 0.04348 0.04585 0.04782 1.43% Castro::reset_internal_energy(Fab) 1008 0.0432 0.04557 0.04753 1.42% Castro::normalize_species() 62 0.04474 0.04538 0.0464 1.38% FabArray::ParallelCopy_nowait() 41 0.03558 0.0409 0.04242 1.26% StateDataPhysBCFunct::() 41 0.02858 0.0313 0.03462 1.03% StateData::FillBoundary(geom) 41 0.02847 0.03119 0.0345 1.03% Castro::construct_new_source() 50 0.02932 0.03067 0.03292 0.98% Gravity::interpolate_monopole_grav() 21 0.02626 0.02651 0.02691 0.80% Castro::post_init() 1 0.0261 0.02632 0.02665 0.79% Castro::construct_new_gravity_source() 10 0.0233 0.02458 0.02654 0.79% Amr::writePlotFile() 2 0.02236 0.02272 0.02314 0.69% Castro::finalize_do_advance() 10 0.01248 0.01709 0.02067 0.62% Castro::post_timestep() 10 0.01502 0.01569 0.01605 0.48% Castro::apply_source_to_state() 20 0.01064 0.01259 0.01358 0.40% FabArray::Saxpy() 20 0.0106 0.01253 0.01352 0.40% FabArray::setDomainBndry() 41 0.007165 0.01012 0.01254 0.37% VisMF::Write(FabArray) 2 0.008575 0.009621 0.01221 0.36% Castro::Castro() 1 0.009671 0.01076 0.01187 0.35% Castro::check_for_nan() 20 0.01025 0.01105 0.01175 0.35% MultiFab::contains_nan() 20 0.01023 0.01102 0.01173 0.35% Castro::construct_old_source() 50 0.007095 0.009598 0.01027 0.31% Castro::construct_old_gravity_source() 10 0.007028 0.009528 0.0102 0.30% Castro::computeNewDt() 9 0.008359 0.008364 0.008374 0.25% Castro::initMFs() 1 0.006409 0.007123 0.007951 0.24% AmrLevel::AmrLevel(dm) 1 0.005308 0.005932 0.006513 0.19% Other 260 0.02041 0.02478 0.02882 0.86% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 33 B 43 B 85 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 15 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8659 KiB 8669 KiB 8674 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6728 KiB 6736 KiB 6739 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7131 KiB 7140 KiB 7142 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4546 KiB 4553 KiB 4574 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 202 KiB 218 KiB 240 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 14 KiB 16 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2793 KiB 2797 KiB 2798 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 228 KiB 234 KiB 240 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 35 KiB 40 KiB 55 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 78 KiB 78 KiB 79 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 67 KiB 69 KiB 71 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.06-22-g1d307c2c661a-dirty) finalized