Initializing AMReX (25.06-22-g1d307c2c661a-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.06-22-g1d307c2c661a-dirty) initialized Starting run at 05:19:28 UTC on 2025-09-09. Successfully read inputs file ... Castro git describe: 25.09.1-4-g9afd1197f AMReX git describe: 25.06-22-g1d307c2c6-dirty Microphysics git describe: 25.09-1-gf9ae8719 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015442883 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.348846048 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.338151955 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.322555348 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.315903861 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.364587706 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.30524206 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.298531948 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.298682847 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.300407591 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.298907246 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.008125061 seconds Ending run at 05:19:31 UTC on 2025-09-09. Run time = 3.391068052 Run time without initialization = 3.204727077 Average number of zones advanced per microsecond: 0.818 Average number of zones advanced per microsecond per rank: 0.102 TinyProfiler total time across processes [min...avg...max]: 3.3861 ... 3.3896 ... 3.3911 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1889 2.2211 2.2494 66.33% Gravity::make_radial_gravity() 21 0.297 0.306 0.3191 9.41% check_for_negative_density() 10 0.06637 0.09751 0.1304 3.85% Castro::initData() 1 0.03712 0.07371 0.1091 3.22% Castro::estTimeStep() 21 0.02747 0.06668 0.1075 3.17% FabArray::ParallelCopy_finish() 41 0.04309 0.06362 0.1067 3.15% amrex::Copy() 193 0.06692 0.08197 0.09558 2.82% FabArray::setVal() 143 0.05128 0.06584 0.07357 2.17% Castro::normalize_species() 62 0.04529 0.04733 0.0508 1.50% FabArray::ParallelCopy_nowait() 41 0.03584 0.04207 0.04775 1.41% Castro::reset_internal_energy(Fab) 1008 0.04493 0.0463 0.04759 1.40% FillPatchIterator::Initialize 41 0.02733 0.03357 0.03758 1.11% StateData::FillBoundary(geom) 41 0.02869 0.03144 0.03399 1.00% Gravity::interpolate_monopole_grav() 21 0.02619 0.02725 0.02865 0.84% Castro::construct_new_gravity_source() 10 0.02247 0.02373 0.02484 0.73% Castro::computeTemp() 63 0.01808 0.01845 0.01874 0.55% Castro::initialize_do_advance() 10 0.01168 0.0166 0.01829 0.54% Amr::writePlotFile() 2 0.008704 0.01205 0.01427 0.42% FabArray::Saxpy() 20 0.01043 0.0121 0.01311 0.39% Castro::initialize_advance() 10 0.005275 0.01043 0.01286 0.38% MultiFab::contains_nan() 20 0.0104 0.01144 0.01272 0.37% VisMF::Write(FabArray) 2 0.008425 0.009515 0.01267 0.37% FabArray::setDomainBndry() 41 0.007885 0.01044 0.0125 0.37% Castro::initMFs() 1 0.006469 0.007655 0.01062 0.31% Castro::construct_old_gravity_source() 10 0.006723 0.00879 0.009283 0.27% StateData::define() 4 0.005459 0.006291 0.008401 0.25% Castro::construct_new_source() 50 0.005925 0.006112 0.006364 0.19% main() 1 0.0037 0.004067 0.004349 0.13% Gravity::get_new_grav_vector() 11 0.002758 0.00343 0.003952 0.12% Gravity::get_old_grav_vector() 10 0.001624 0.002068 0.002539 0.07% Amr::coarseTimeStep() 10 0.00128 0.001716 0.001995 0.06% Castro::finalize_do_advance() 10 0.0005474 0.001095 0.001196 0.04% AmrLevel::FillPatch() 41 0.0008084 0.0009492 0.001034 0.03% Amr::timeStep() 10 0.0001356 0.000194 0.0004573 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002776 0.0002946 0.0003187 0.01% Castro::do_advance_ctu() 10 0.0001576 0.000181 0.0001979 0.01% Castro::clean_state() 62 0.0001465 0.0001636 0.0001812 0.01% StateDataPhysBCFunct::() 41 9.952e-05 0.0001221 0.0001546 0.00% FillPatchIterator::FillFromLevel0() 41 9.792e-05 0.0001084 0.0001192 0.00% FabArray::ParallelCopy() 41 9.103e-05 9.586e-05 0.0001046 0.00% Castro::do_old_sources() 10 8.178e-05 9.073e-05 0.0001034 0.00% Castro::Castro() 1 4.115e-05 6.427e-05 8.558e-05 0.00% FillPatchSingleLevel 41 6.476e-05 6.967e-05 7.762e-05 0.00% Amr::FinalizeInit() 1 3.331e-06 1.314e-05 7.474e-05 0.00% Amr::defBaseLevel() 1 3.922e-05 5.775e-05 7.084e-05 0.00% Castro::construct_old_source() 50 5.394e-05 6.228e-05 7.041e-05 0.00% Castro::do_new_sources() 10 5.314e-05 6.26e-05 6.879e-05 0.00% Castro::apply_source_to_state() 20 4.413e-05 5.444e-05 6.326e-05 0.00% Castro::subcycle_advance_ctu() 10 4.203e-05 4.997e-05 6.119e-05 0.00% Castro::construct_old_gravity() 10 3.425e-05 4.064e-05 5.459e-05 0.00% Castro::advance() 10 4.043e-05 4.724e-05 5.333e-05 0.00% Castro::construct_new_gravity() 10 3.069e-05 3.731e-05 4.945e-05 0.00% Castro::expand_state() 10 2.06e-05 2.581e-05 3.008e-05 0.00% Castro::check_for_nan() 20 2.501e-05 2.669e-05 2.989e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.051e-05 1.531e-05 2.903e-05 0.00% Castro::post_timestep() 10 1.279e-05 1.646e-05 2.121e-05 0.00% Castro::post_init() 1 1.446e-05 1.64e-05 1.968e-05 0.00% Amr::init() 1 1.85e-06 5.599e-06 1.911e-05 0.00% Castro::computeNewDt() 9 9.248e-06 9.92e-06 1.11e-05 0.00% Amr::InitializeInit() 1 2.616e-06 4.153e-06 7.951e-06 0.00% Castro::computeInitialDt() 2 2.976e-06 3.568e-06 4.051e-06 0.00% Amr::initialInit() 1 1.752e-06 2.143e-06 2.6e-06 0.00% Other 256 0.01072 0.01631 0.01942 0.57% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.386 3.39 3.391 100.00% Amr::coarseTimeStep() 10 3.192 3.192 3.192 94.14% Amr::timeStep() 10 3.181 3.181 3.181 93.82% Castro::advance() 10 3.164 3.165 3.165 93.33% Castro::subcycle_advance_ctu() 10 3.089 3.093 3.107 91.63% Castro::do_advance_ctu() 10 3.089 3.093 3.107 91.63% Castro::construct_ctu_hydro_source() 10 2.338 2.34 2.345 69.16% Gravity::make_radial_gravity() 21 0.3138 0.322 0.332 9.79% AmrLevel::FillPatch() 41 0.1935 0.2142 0.2392 7.06% FillPatchIterator::Initialize 41 0.1641 0.1817 0.2105 6.21% Gravity::get_new_grav_vector() 11 0.2071 0.2086 0.2102 6.20% Castro::construct_old_gravity() 10 0.1926 0.199 0.2085 6.15% Gravity::get_old_grav_vector() 10 0.1918 0.1984 0.2078 6.13% Amr::init() 1 0.1809 0.1847 0.1861 5.49% Castro::construct_new_gravity() 10 0.1823 0.1835 0.1847 5.45% Castro::initialize_do_advance() 10 0.1655 0.1711 0.1753 5.17% FillPatchIterator::FillFromLevel0() 41 0.1193 0.1376 0.1743 5.14% FillPatchSingleLevel 41 0.1192 0.1375 0.1742 5.14% Amr::initialInit() 1 0.1653 0.1688 0.1704 5.03% FabArray::ParallelCopy() 41 0.0867 0.1059 0.1428 4.21% Amr::InitializeInit() 1 0.06213 0.09924 0.1364 4.02% Amr::defBaseLevel() 1 0.06212 0.09924 0.1364 4.02% check_for_negative_density() 10 0.06637 0.09751 0.1304 3.85% Castro::expand_state() 10 0.1112 0.1171 0.1278 3.77% Castro::clean_state() 62 0.1147 0.1179 0.1203 3.55% Castro::initData() 1 0.04095 0.07751 0.1126 3.32% Castro::do_old_sources() 10 0.0926 0.1014 0.1085 3.20% Amr::FinalizeInit() 1 0.02914 0.06955 0.108 3.19% Castro::estTimeStep() 21 0.02747 0.06668 0.1075 3.17% FabArray::ParallelCopy_finish() 41 0.04309 0.06362 0.1067 3.15% amrex::Copy() 193 0.06692 0.08197 0.09558 2.82% Castro::computeInitialDt() 2 0.002264 0.04275 0.0813 2.40% FabArray::setVal() 143 0.05128 0.06584 0.07357 2.17% Castro::initialize_advance() 10 0.05348 0.06801 0.07227 2.13% Castro::computeTemp() 63 0.06334 0.06504 0.06647 1.96% Castro::do_new_sources() 10 0.06034 0.06287 0.06627 1.95% Castro::normalize_species() 62 0.04529 0.04733 0.0508 1.50% Castro::reset_internal_energy(MultiFab) 63 0.04525 0.04659 0.0479 1.41% FabArray::ParallelCopy_nowait() 41 0.03597 0.04218 0.04784 1.41% Castro::reset_internal_energy(Fab) 1008 0.04493 0.0463 0.04759 1.40% StateDataPhysBCFunct::() 41 0.02882 0.03157 0.03411 1.01% StateData::FillBoundary(geom) 41 0.02869 0.03144 0.03399 1.00% Castro::construct_new_source() 50 0.0284 0.02984 0.0312 0.92% Gravity::interpolate_monopole_grav() 21 0.02619 0.02725 0.02865 0.84% Castro::post_init() 1 0.02595 0.0263 0.02655 0.78% Castro::construct_new_gravity_source() 10 0.02247 0.02373 0.02484 0.73% Amr::writePlotFile() 2 0.02382 0.02413 0.02453 0.72% Castro::finalize_do_advance() 10 0.0123 0.0166 0.01958 0.58% Castro::post_timestep() 10 0.01565 0.01613 0.01665 0.49% Castro::Castro() 1 0.01032 0.01153 0.01482 0.44% Castro::apply_source_to_state() 20 0.01049 0.01215 0.01317 0.39% FabArray::Saxpy() 20 0.01043 0.0121 0.01311 0.39% Castro::check_for_nan() 20 0.01043 0.01147 0.01274 0.38% MultiFab::contains_nan() 20 0.0104 0.01144 0.01272 0.37% VisMF::Write(FabArray) 2 0.008425 0.009515 0.01267 0.37% FabArray::setDomainBndry() 41 0.007885 0.01044 0.0125 0.37% Castro::initMFs() 1 0.006469 0.007655 0.01062 0.31% Castro::construct_old_source() 50 0.006777 0.008853 0.009353 0.28% Castro::construct_old_gravity_source() 10 0.006723 0.00879 0.009283 0.27% Castro::computeNewDt() 9 0.008427 0.008437 0.008453 0.25% AmrLevel::AmrLevel(dm) 1 0.00547 0.006306 0.008422 0.25% StateData::define() 4 0.005459 0.006291 0.008401 0.25% Other 256 0.0155 0.02515 0.03016 0.89% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 32 B 39 B 57 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8647 KiB 8659 KiB 8663 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6744 KiB 6746 KiB 6753 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7130 KiB 7133 KiB 7140 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4551 KiB 4559 KiB 4580 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 216 KiB 236 KiB 264 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 14 KiB 16 KiB 21 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2799 KiB 2800 KiB 2803 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 235 KiB 242 KiB 250 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 40 KiB 47 KiB 64 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2025 KiB 2027 KiB 2028 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 78 KiB 79 KiB 79 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 72 KiB 75 KiB 78 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.06-22-g1d307c2c661a-dirty) finalized