Initializing AMReX (25.06-22-g1d307c2c661a-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.06-22-g1d307c2c661a-dirty) initialized Starting run at 05:17:34 UTC on 2025-09-11. Successfully read inputs file ... Castro git describe: 25.09.1-5-gbb1a3961a AMReX git describe: 25.06-22-g1d307c2c6-dirty Microphysics git describe: 25.09-1-gf9ae8719 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014580119 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.338286722 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.347446481 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.313648902 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.312425156 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.371408624 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.306897973 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.297984484 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.301001139 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.298101313 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.298570378 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.00742188 seconds Ending run at 05:17:38 UTC on 2025-09-11. Run time = 3.372713181 Run time without initialization = 3.197957247 Average number of zones advanced per microsecond: 0.820 Average number of zones advanced per microsecond per rank: 0.102 TinyProfiler total time across processes [min...avg...max]: 3.3669 ... 3.3707 ... 3.3731 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1686 2.2308 2.2768 67.50% Gravity::make_radial_gravity() 21 0.2897 0.2952 0.308 9.13% check_for_negative_density() 10 0.05262 0.09952 0.1632 4.84% Castro::initData() 1 0.03695 0.07113 0.1068 3.17% Castro::estTimeStep() 21 0.02335 0.06294 0.1033 3.06% FabArray::ParallelCopy_finish() 41 0.04651 0.05827 0.09405 2.79% amrex::Copy() 193 0.06352 0.07884 0.08503 2.52% FabArray::setVal() 143 0.05525 0.06553 0.07083 2.10% FabArray::ParallelCopy_nowait() 41 0.03544 0.04179 0.04796 1.42% Castro::reset_internal_energy(Fab) 1008 0.04119 0.04482 0.04766 1.41% Castro::normalize_species() 62 0.04489 0.04568 0.0468 1.39% FillPatchIterator::Initialize 41 0.02779 0.03234 0.03519 1.04% StateData::FillBoundary(geom) 41 0.02871 0.03097 0.03256 0.97% Gravity::interpolate_monopole_grav() 21 0.02651 0.02751 0.03222 0.96% Castro::construct_new_gravity_source() 10 0.02274 0.02477 0.0273 0.81% Castro::computeTemp() 63 0.01673 0.01778 0.01859 0.55% Castro::initialize_do_advance() 10 0.01185 0.01637 0.01823 0.54% Castro::initialize_advance() 10 0.005378 0.01069 0.0135 0.40% FabArray::Saxpy() 20 0.01071 0.01245 0.01334 0.40% MultiFab::contains_nan() 20 0.01065 0.01151 0.01303 0.39% FabArray::setDomainBndry() 41 0.006956 0.01032 0.01294 0.38% Amr::writePlotFile() 2 0.007573 0.01003 0.0125 0.37% VisMF::Write(FabArray) 2 0.008309 0.009549 0.01194 0.35% Castro::initMFs() 1 0.006443 0.007807 0.01061 0.31% Castro::construct_old_gravity_source() 10 0.007027 0.009378 0.009978 0.30% StateData::define() 4 0.005429 0.006591 0.008463 0.25% Castro::construct_new_source() 50 0.005767 0.006003 0.006263 0.19% main() 1 0.003864 0.004242 0.004379 0.13% Gravity::get_new_grav_vector() 11 0.002843 0.003433 0.003832 0.11% Amr::coarseTimeStep() 10 0.0006148 0.002028 0.00304 0.09% Gravity::get_old_grav_vector() 10 0.001667 0.00206 0.002497 0.07% Castro::finalize_do_advance() 10 0.0004834 0.001105 0.001329 0.04% AmrLevel::FillPatch() 41 0.0007269 0.001008 0.001178 0.03% Amr::timeStep() 10 0.0001271 0.0001893 0.0004067 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002696 0.0002864 0.000309 0.01% Castro::do_advance_ctu() 10 0.0001383 0.0001767 0.0001992 0.01% Castro::clean_state() 62 0.0001434 0.0001572 0.0001748 0.01% StateDataPhysBCFunct::() 41 0.0001006 0.0001182 0.0001484 0.00% FillPatchIterator::FillFromLevel0() 41 8.912e-05 0.0001096 0.0001234 0.00% Castro::do_old_sources() 10 6.548e-05 8.852e-05 0.0001064 0.00% FabArray::ParallelCopy() 41 8.433e-05 9.652e-05 0.0001053 0.00% Amr::FinalizeInit() 1 3.225e-06 1.418e-05 8.601e-05 0.00% Castro::construct_old_source() 50 4.394e-05 6.528e-05 7.908e-05 0.00% FillPatchSingleLevel 41 6.67e-05 7.216e-05 7.815e-05 0.00% Castro::Castro() 1 4.465e-05 6.103e-05 7.245e-05 0.00% Castro::do_new_sources() 10 5.256e-05 6.266e-05 7.141e-05 0.00% Amr::defBaseLevel() 1 4.09e-05 4.94e-05 6.539e-05 0.00% Castro::advance() 10 3.632e-05 4.509e-05 5.81e-05 0.00% Castro::subcycle_advance_ctu() 10 4.323e-05 4.801e-05 5.573e-05 0.00% Castro::apply_source_to_state() 20 3.34e-05 5.074e-05 5.537e-05 0.00% Castro::construct_old_gravity() 10 3.294e-05 3.91e-05 4.69e-05 0.00% Castro::construct_new_gravity() 10 2.977e-05 3.529e-05 4.231e-05 0.00% Castro::check_for_nan() 20 2.257e-05 2.6e-05 3.027e-05 0.00% Castro::expand_state() 10 2.105e-05 2.391e-05 2.834e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.1e-05 1.389e-05 2.036e-05 0.00% Castro::post_timestep() 10 1.364e-05 1.639e-05 1.938e-05 0.00% Castro::post_init() 1 1.314e-05 1.472e-05 1.654e-05 0.00% Castro::computeNewDt() 9 8.386e-06 9.649e-06 1.15e-05 0.00% Castro::computeInitialDt() 2 2.892e-06 4.138e-06 9.208e-06 0.00% Amr::InitializeInit() 1 2.853e-06 3.741e-06 7.413e-06 0.00% Amr::initialInit() 1 1.547e-06 2.108e-06 3.044e-06 0.00% Amr::init() 1 1.866e-06 2.505e-06 2.821e-06 0.00% Other 256 0.01061 0.01634 0.02006 0.59% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.367 3.371 3.373 100.00% Amr::coarseTimeStep() 10 3.186 3.186 3.186 94.46% Amr::timeStep() 10 3.173 3.174 3.176 94.15% Castro::advance() 10 3.158 3.159 3.159 93.66% Castro::subcycle_advance_ctu() 10 3.082 3.087 3.101 91.92% Castro::do_advance_ctu() 10 3.082 3.087 3.101 91.92% Castro::construct_ctu_hydro_source() 10 2.344 2.351 2.358 69.91% Gravity::make_radial_gravity() 21 0.3059 0.3113 0.321 9.52% AmrLevel::FillPatch() 41 0.1994 0.2069 0.2182 6.47% Gravity::get_new_grav_vector() 11 0.2069 0.2086 0.2095 6.21% Castro::construct_old_gravity() 10 0.184 0.1887 0.198 5.87% Gravity::get_old_grav_vector() 10 0.1833 0.188 0.1974 5.85% FillPatchIterator::Initialize 41 0.1635 0.1742 0.1935 5.74% Castro::construct_new_gravity() 10 0.1857 0.1864 0.1869 5.54% Amr::init() 1 0.1686 0.1724 0.1746 5.18% Castro::initialize_do_advance() 10 0.1563 0.1623 0.1666 4.94% check_for_negative_density() 10 0.05262 0.09952 0.1632 4.84% Amr::initialInit() 1 0.1535 0.1577 0.1599 4.74% FillPatchIterator::FillFromLevel0() 41 0.1219 0.1315 0.1587 4.71% FillPatchSingleLevel 41 0.1218 0.1314 0.1586 4.70% Amr::InitializeInit() 1 0.06221 0.09678 0.1329 3.94% Amr::defBaseLevel() 1 0.0622 0.09678 0.1329 3.94% FabArray::ParallelCopy() 41 0.0892 0.1003 0.1297 3.84% Castro::clean_state() 62 0.1091 0.1141 0.1189 3.52% Castro::expand_state() 10 0.1018 0.1094 0.1185 3.51% Castro::initData() 1 0.0404 0.07467 0.1101 3.26% Castro::do_old_sources() 10 0.09653 0.1002 0.1051 3.12% Castro::estTimeStep() 21 0.02335 0.06294 0.1033 3.06% Amr::FinalizeInit() 1 0.02619 0.06096 0.09682 2.87% FabArray::ParallelCopy_finish() 41 0.04651 0.05827 0.09405 2.79% amrex::Copy() 193 0.06352 0.07884 0.08503 2.52% Castro::initialize_advance() 10 0.05423 0.06831 0.07364 2.18% Castro::computeInitialDt() 2 0.002128 0.03691 0.07263 2.15% FabArray::setVal() 143 0.05525 0.06553 0.07083 2.10% Castro::do_new_sources() 10 0.06 0.06363 0.06936 2.06% Castro::computeTemp() 63 0.05826 0.06288 0.0663 1.97% FabArray::ParallelCopy_nowait() 41 0.03555 0.04189 0.04805 1.42% Castro::reset_internal_energy(MultiFab) 63 0.04146 0.0451 0.04795 1.42% Castro::reset_internal_energy(Fab) 1008 0.04119 0.04482 0.04766 1.41% Castro::normalize_species() 62 0.04489 0.04568 0.0468 1.39% Castro::construct_new_source() 50 0.02873 0.03077 0.03347 0.99% StateDataPhysBCFunct::() 41 0.02886 0.03109 0.03266 0.97% StateData::FillBoundary(geom) 41 0.02871 0.03097 0.03256 0.97% Gravity::interpolate_monopole_grav() 21 0.02651 0.02751 0.03222 0.96% Castro::construct_new_gravity_source() 10 0.02274 0.02477 0.0273 0.81% Castro::post_init() 1 0.02329 0.0236 0.02375 0.70% Castro::finalize_do_advance() 10 0.0123 0.01849 0.02317 0.69% Amr::writePlotFile() 2 0.02204 0.0222 0.02262 0.67% Castro::post_timestep() 10 0.01476 0.01552 0.01653 0.49% Castro::Castro() 1 0.009855 0.01161 0.01483 0.44% Castro::apply_source_to_state() 20 0.01074 0.0125 0.01339 0.40% FabArray::Saxpy() 20 0.01071 0.01245 0.01334 0.40% Castro::check_for_nan() 20 0.01068 0.01153 0.01305 0.39% MultiFab::contains_nan() 20 0.01065 0.01151 0.01303 0.39% FabArray::setDomainBndry() 41 0.006956 0.01032 0.01294 0.38% VisMF::Write(FabArray) 2 0.008309 0.009549 0.01194 0.35% Castro::initMFs() 1 0.006443 0.007807 0.01061 0.31% Castro::construct_old_source() 50 0.007071 0.009443 0.01006 0.30% Castro::construct_old_gravity_source() 10 0.007027 0.009378 0.009978 0.30% Castro::computeNewDt() 9 0.008636 0.008664 0.008684 0.26% AmrLevel::AmrLevel(dm) 1 0.00544 0.006605 0.008482 0.25% StateData::define() 4 0.005429 0.006591 0.008463 0.25% Other 256 0.01509 0.02497 0.03121 0.93% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 33 B 41 B 60 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8646 KiB 8658 KiB 8664 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6759 KiB 6770 KiB 6781 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7121 KiB 7133 KiB 7140 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4564 KiB 4575 KiB 4602 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 215 KiB 226 KiB 241 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 14 KiB 16 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2806 KiB 2810 KiB 2814 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 231 KiB 235 KiB 243 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 39 KiB 43 KiB 58 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2024 KiB 2027 KiB 2028 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 78 KiB 79 KiB 79 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 69 KiB 71 KiB 75 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.06-22-g1d307c2c661a-dirty) finalized