Initializing AMReX (25.06-22-g1d307c2c661a-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.06-22-g1d307c2c661a-dirty) initialized Starting run at 05:17:56 UTC on 2025-09-12. Successfully read inputs file ... Castro git describe: 25.09.1-5-gbb1a3961a AMReX git describe: 25.06-22-g1d307c2c6-dirty Microphysics git describe: 25.09-2-g324ea159 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014167893 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.347783253 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.327464115 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.319347696 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.318297859 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.354070525 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.317123792 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.308315055 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.308978398 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.306967292 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.305088058 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007614855 seconds Ending run at 05:17:59 UTC on 2025-09-12. Run time = 3.393877659 Run time without initialization = 3.226209265 Average number of zones advanced per microsecond: 0.813 Average number of zones advanced per microsecond per rank: 0.102 TinyProfiler total time across processes [min...avg...max]: 3.3923 ... 3.3936 ... 3.3943 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2205 2.2669 2.3393 68.92% Gravity::make_radial_gravity() 21 0.2858 0.2925 0.3134 9.23% check_for_negative_density() 10 0.0185 0.09619 0.146 4.30% Castro::initData() 1 0.03718 0.07231 0.1041 3.07% FabArray::ParallelCopy_finish() 41 0.03551 0.04889 0.09373 2.76% amrex::Copy() 193 0.06362 0.08137 0.09019 2.66% Castro::estTimeStep() 21 0.0222 0.05899 0.08958 2.64% FabArray::setVal() 143 0.0509 0.06525 0.07112 2.10% Castro::normalize_species() 62 0.04585 0.04891 0.05245 1.55% Castro::reset_internal_energy(Fab) 1008 0.04498 0.0463 0.04718 1.39% FabArray::ParallelCopy_nowait() 41 0.03631 0.04234 0.04416 1.30% StateData::FillBoundary(geom) 41 0.02836 0.03158 0.03557 1.05% FillPatchIterator::Initialize 41 0.02801 0.03295 0.03504 1.03% Gravity::interpolate_monopole_grav() 21 0.02599 0.02651 0.0269 0.79% Castro::construct_new_gravity_source() 10 0.02346 0.02468 0.02601 0.77% Castro::computeTemp() 63 0.01804 0.01839 0.01919 0.57% Castro::initialize_do_advance() 10 0.01052 0.01625 0.01783 0.53% FabArray::Saxpy() 20 0.01067 0.01269 0.01392 0.41% Castro::initialize_advance() 10 0.005315 0.0105 0.01326 0.39% VisMF::Write(FabArray) 2 0.00906 0.009632 0.01264 0.37% FabArray::setDomainBndry() 41 0.006726 0.01065 0.01236 0.36% MultiFab::contains_nan() 20 0.01032 0.0112 0.01229 0.36% Castro::construct_old_gravity_source() 10 0.00702 0.009535 0.01022 0.30% Amr::writePlotFile() 2 0.007422 0.009369 0.009832 0.29% Castro::initMFs() 1 0.006464 0.007223 0.00868 0.26% Castro::construct_new_source() 50 0.005906 0.006206 0.006425 0.19% main() 1 0.003968 0.004399 0.004677 0.14% Gravity::get_new_grav_vector() 11 0.002884 0.003531 0.003826 0.11% Amr::coarseTimeStep() 10 0.0009652 0.001908 0.002904 0.09% Gravity::get_old_grav_vector() 10 0.0015 0.002177 0.00268 0.08% Castro::finalize_do_advance() 10 0.0005202 0.001105 0.00126 0.04% AmrLevel::FillPatch() 41 0.0009265 0.001052 0.001153 0.03% Amr::timeStep() 10 0.0001438 0.0002079 0.0005683 0.02% Castro::reset_internal_energy(MultiFab) 63 0.0002731 0.0002939 0.0003403 0.01% Castro::clean_state() 62 0.0001359 0.0001693 0.0002084 0.01% Castro::do_advance_ctu() 10 0.0001561 0.0001765 0.0001972 0.01% StateDataPhysBCFunct::() 41 0.0001083 0.0001229 0.0001447 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001021 0.0001107 0.0001306 0.00% Castro::do_old_sources() 10 8.332e-05 9.586e-05 0.0001058 0.00% FabArray::ParallelCopy() 41 8.792e-05 9.496e-05 0.000104 0.00% FillPatchSingleLevel 41 6.992e-05 7.529e-05 9.212e-05 0.00% Amr::FinalizeInit() 1 3.598e-06 1.406e-05 8.285e-05 0.00% Castro::apply_source_to_state() 20 5.328e-05 5.786e-05 7.485e-05 0.00% Castro::construct_old_source() 50 6.265e-05 7.017e-05 7.482e-05 0.00% Castro::advance() 10 4.387e-05 5.207e-05 7.283e-05 0.00% Castro::subcycle_advance_ctu() 10 4.837e-05 5.579e-05 7.012e-05 0.00% Castro::do_new_sources() 10 5.343e-05 6.156e-05 6.853e-05 0.00% Castro::Castro() 1 4.375e-05 5.532e-05 6.274e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.056e-05 1.745e-05 5.453e-05 0.00% Castro::construct_old_gravity() 10 3.321e-05 4.388e-05 5.31e-05 0.00% Amr::defBaseLevel() 1 4.089e-05 4.678e-05 4.994e-05 0.00% Castro::construct_new_gravity() 10 3.135e-05 3.668e-05 4.201e-05 0.00% Castro::expand_state() 10 2.249e-05 2.799e-05 3.259e-05 0.00% Castro::check_for_nan() 20 2.398e-05 2.692e-05 3.228e-05 0.00% Castro::post_init() 1 1.412e-05 1.762e-05 2.357e-05 0.00% Castro::post_timestep() 10 1.481e-05 1.644e-05 1.876e-05 0.00% Castro::computeNewDt() 9 8.604e-06 1.026e-05 1.272e-05 0.00% Amr::InitializeInit() 1 2.797e-06 3.662e-06 6.674e-06 0.00% Amr::init() 1 2.02e-06 3.255e-06 6.587e-06 0.00% Castro::computeInitialDt() 2 2.786e-06 3.35e-06 4.171e-06 0.00% Amr::initialInit() 1 1.786e-06 2.228e-06 3.389e-06 0.00% Other 260 0.01517 0.02007 0.02336 0.69% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.392 3.394 3.394 100.00% Amr::coarseTimeStep() 10 3.214 3.214 3.214 94.69% Amr::timeStep() 10 3.201 3.202 3.203 94.37% Castro::advance() 10 3.185 3.185 3.186 93.86% Castro::subcycle_advance_ctu() 10 3.108 3.113 3.131 92.25% Castro::do_advance_ctu() 10 3.108 3.113 3.131 92.25% Castro::construct_ctu_hydro_source() 10 2.38 2.385 2.388 70.35% Gravity::make_radial_gravity() 21 0.3032 0.3095 0.3266 9.62% AmrLevel::FillPatch() 41 0.1921 0.2007 0.2183 6.43% Gravity::get_new_grav_vector() 11 0.2082 0.2088 0.2094 6.17% Castro::construct_old_gravity() 10 0.1778 0.1819 0.1959 5.77% Gravity::get_old_grav_vector() 10 0.1771 0.1812 0.1952 5.75% FillPatchIterator::Initialize 41 0.1595 0.1669 0.1938 5.71% Castro::construct_new_gravity() 10 0.1852 0.1862 0.1871 5.51% Castro::initialize_do_advance() 10 0.1607 0.1661 0.1703 5.02% Amr::init() 1 0.1657 0.1672 0.1681 4.95% FillPatchIterator::FillFromLevel0() 41 0.1128 0.1233 0.159 4.68% FillPatchSingleLevel 41 0.1127 0.1232 0.1589 4.68% Amr::initialInit() 1 0.1518 0.1533 0.1542 4.54% check_for_negative_density() 10 0.0185 0.09619 0.146 4.30% FabArray::ParallelCopy() 41 0.079 0.09143 0.1303 3.84% Amr::InitializeInit() 1 0.0583 0.09455 0.1268 3.74% Amr::defBaseLevel() 1 0.0583 0.09455 0.1268 3.74% Castro::expand_state() 10 0.1078 0.1131 0.1244 3.67% Castro::clean_state() 62 0.1148 0.1194 0.1216 3.58% Castro::initData() 1 0.0412 0.07613 0.1077 3.17% Castro::do_old_sources() 10 0.09284 0.09595 0.09901 2.92% Amr::FinalizeInit() 1 0.02655 0.05873 0.0952 2.80% FabArray::ParallelCopy_finish() 41 0.03551 0.04889 0.09373 2.76% amrex::Copy() 193 0.06362 0.08137 0.09019 2.66% Castro::estTimeStep() 21 0.0222 0.05899 0.08958 2.64% Castro::initialize_advance() 10 0.0501 0.06909 0.07414 2.18% FabArray::setVal() 143 0.0509 0.06525 0.07112 2.10% Castro::computeInitialDt() 2 0.002149 0.03439 0.0708 2.09% Castro::do_new_sources() 10 0.06048 0.06481 0.0694 2.04% Castro::computeTemp() 63 0.06345 0.06498 0.06622 1.95% Castro::normalize_species() 62 0.04585 0.04891 0.05245 1.55% Castro::reset_internal_energy(MultiFab) 63 0.04532 0.04659 0.04748 1.40% Castro::reset_internal_energy(Fab) 1008 0.04498 0.0463 0.04718 1.39% FabArray::ParallelCopy_nowait() 41 0.03648 0.04245 0.04426 1.30% StateDataPhysBCFunct::() 41 0.02849 0.0317 0.03571 1.05% StateData::FillBoundary(geom) 41 0.02836 0.03158 0.03557 1.05% Castro::construct_new_source() 50 0.02954 0.03088 0.03237 0.95% Gravity::interpolate_monopole_grav() 21 0.02599 0.02651 0.0269 0.79% Castro::construct_new_gravity_source() 10 0.02346 0.02468 0.02601 0.77% Castro::post_init() 1 0.02337 0.02373 0.02392 0.70% Amr::writePlotFile() 2 0.02154 0.02165 0.02202 0.65% Castro::finalize_do_advance() 10 0.01134 0.01705 0.02137 0.63% Castro::post_timestep() 10 0.01611 0.01667 0.01749 0.52% Castro::apply_source_to_state() 20 0.01072 0.01275 0.01398 0.41% FabArray::Saxpy() 20 0.01067 0.01269 0.01392 0.41% VisMF::Write(FabArray) 2 0.00906 0.009632 0.01264 0.37% FabArray::setDomainBndry() 41 0.006726 0.01065 0.01236 0.36% Castro::check_for_nan() 20 0.01035 0.01123 0.01232 0.36% MultiFab::contains_nan() 20 0.01032 0.0112 0.01229 0.36% Castro::Castro() 1 0.009694 0.01074 0.01184 0.35% Castro::construct_old_source() 50 0.007088 0.009605 0.01029 0.30% Castro::construct_old_gravity_source() 10 0.00702 0.009535 0.01022 0.30% Castro::computeNewDt() 9 0.008645 0.008666 0.008684 0.26% Castro::initMFs() 1 0.006464 0.007223 0.00868 0.26% AmrLevel::AmrLevel(dm) 1 0.00549 0.006122 0.007254 0.21% Other 260 0.01995 0.02662 0.03116 0.92% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 32 B 36 B 41 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 15 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8655 KiB 8666 KiB 8670 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6779 KiB 6783 KiB 6787 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7129 KiB 7138 KiB 7142 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4576 KiB 4582 KiB 4605 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 213 KiB 224 KiB 245 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 15 KiB 16 KiB 19 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2811 KiB 2815 KiB 2817 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 227 KiB 232 KiB 245 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 35 KiB 41 KiB 61 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2026 KiB 2028 KiB 2029 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 78 KiB 79 KiB 79 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 67 KiB 68 KiB 73 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.06-22-g1d307c2c661a-dirty) finalized