Initializing AMReX (25.06-22-g1d307c2c661a-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.06-22-g1d307c2c661a-dirty) initialized Starting run at 05:17:55 UTC on 2025-09-15. Successfully read inputs file ... Castro git describe: 25.09.1-5-gbb1a3961a AMReX git describe: 25.06-22-g1d307c2c6-dirty Microphysics git describe: 25.09-3-gb51c2015 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014646051 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.347805811 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.353506387 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.322705655 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.322379483 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.372312907 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.306904858 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.300943011 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.333533337 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.322677363 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.305711718 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007549382 seconds Ending run at 05:17:58 UTC on 2025-09-15. Run time = 3.484170507 Run time without initialization = 3.300987812 Average number of zones advanced per microsecond: 0.794 Average number of zones advanced per microsecond per rank: 0.099 TinyProfiler total time across processes [min...avg...max]: 3.4830 ... 3.4839 ... 3.4842 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2303 2.2512 2.2897 65.72% Gravity::make_radial_gravity() 21 0.2943 0.3118 0.3246 9.32% check_for_negative_density() 10 0.09204 0.1342 0.1562 4.48% Castro::initData() 1 0.03756 0.07281 0.1177 3.38% Castro::estTimeStep() 21 0.0225 0.07273 0.1128 3.24% amrex::Copy() 193 0.0805 0.08713 0.09764 2.80% FabArray::setVal() 143 0.06768 0.07409 0.07859 2.26% FabArray::ParallelCopy_finish() 41 0.05437 0.0632 0.07025 2.02% Castro::normalize_species() 62 0.0451 0.04706 0.04842 1.39% Castro::reset_internal_energy(Fab) 1008 0.04286 0.04608 0.04819 1.38% FabArray::ParallelCopy_nowait() 41 0.03982 0.0424 0.04368 1.25% FillPatchIterator::Initialize 41 0.02994 0.03402 0.0359 1.03% StateData::FillBoundary(geom) 41 0.02907 0.03206 0.03432 0.99% Gravity::interpolate_monopole_grav() 21 0.02683 0.02705 0.02749 0.79% Castro::construct_new_gravity_source() 10 0.02331 0.02474 0.02601 0.75% Castro::computeTemp() 63 0.01762 0.01846 0.01917 0.55% Castro::initialize_do_advance() 10 0.01591 0.01737 0.01849 0.53% MultiFab::contains_nan() 20 0.01065 0.01275 0.01559 0.45% Castro::initialize_advance() 10 0.01085 0.01275 0.01486 0.43% FabArray::setDomainBndry() 41 0.007632 0.01096 0.01357 0.39% FabArray::Saxpy() 20 0.01181 0.01288 0.01351 0.39% VisMF::Write(FabArray) 2 0.009135 0.00964 0.01208 0.35% Amr::writePlotFile() 2 0.0074 0.00998 0.01054 0.30% Castro::construct_old_gravity_source() 10 0.009198 0.009457 0.009873 0.28% Castro::initMFs() 1 0.006669 0.007001 0.008685 0.25% Castro::construct_new_source() 50 0.005919 0.006361 0.006775 0.19% main() 1 0.003949 0.004122 0.004252 0.12% Gravity::get_new_grav_vector() 11 0.003098 0.003445 0.003803 0.11% Amr::coarseTimeStep() 10 0.001707 0.002214 0.002832 0.08% Gravity::get_old_grav_vector() 10 0.001652 0.002089 0.00263 0.08% Castro::finalize_do_advance() 10 0.001178 0.001278 0.00135 0.04% AmrLevel::FillPatch() 41 0.001147 0.001234 0.001313 0.04% Amr::timeStep() 10 0.000146 0.0002036 0.0004964 0.01% Castro::reset_internal_energy(MultiFab) 63 0.000278 0.0002951 0.0003047 0.01% Castro::do_advance_ctu() 10 0.0001481 0.0001785 0.0002135 0.01% Castro::clean_state() 62 0.0001474 0.0001635 0.0001877 0.01% StateDataPhysBCFunct::() 41 0.0001043 0.0001288 0.0001652 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001032 0.0001125 0.0001235 0.00% FabArray::ParallelCopy() 41 8.71e-05 9.88e-05 0.0001164 0.00% Castro::do_old_sources() 10 8.604e-05 9.64e-05 0.0001087 0.00% Castro::Castro() 1 5.289e-05 8.105e-05 0.0001002 0.00% Amr::FinalizeInit() 1 3.311e-06 1.504e-05 8.78e-05 0.00% Castro::construct_old_source() 50 6.101e-05 6.895e-05 8.512e-05 0.00% FillPatchSingleLevel 41 6.639e-05 7.408e-05 8.178e-05 0.00% Castro::do_new_sources() 10 6.062e-05 6.699e-05 7.299e-05 0.00% Castro::subcycle_advance_ctu() 10 4.28e-05 5.221e-05 6.726e-05 0.00% Castro::apply_source_to_state() 20 4.25e-05 5.468e-05 6.304e-05 0.00% Castro::construct_old_gravity() 10 3.788e-05 4.8e-05 6.242e-05 0.00% Castro::advance() 10 4.473e-05 5.185e-05 6.209e-05 0.00% Amr::defBaseLevel() 1 3.769e-05 4.404e-05 4.893e-05 0.00% Castro::construct_new_gravity() 10 2.879e-05 3.841e-05 4.539e-05 0.00% Castro::expand_state() 10 2.202e-05 2.661e-05 3.527e-05 0.00% Castro::check_for_nan() 20 2.386e-05 2.617e-05 2.811e-05 0.00% Castro::post_init() 1 1.351e-05 1.727e-05 2.315e-05 0.00% Castro::computeNewDt() 9 9.34e-06 1.192e-05 2.141e-05 0.00% Castro::post_timestep() 10 1.381e-05 1.693e-05 2.101e-05 0.00% Amr::InitializeInit() 1 2.532e-06 3.361e-06 6.429e-06 0.00% Castro::computeInitialDt() 2 3.117e-06 3.399e-06 3.943e-06 0.00% Amr::init() 1 2.108e-06 2.648e-06 3.544e-06 0.00% Amr::initialInit() 1 1.872e-06 2.198e-06 2.906e-06 0.00% Other 261 0.01649 0.0193 0.02124 0.61% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.483 3.484 3.484 100.00% Amr::coarseTimeStep() 10 3.289 3.289 3.289 94.41% Amr::timeStep() 10 3.277 3.277 3.278 94.07% Castro::advance() 10 3.26 3.261 3.261 93.60% Castro::subcycle_advance_ctu() 10 3.176 3.182 3.187 91.46% Castro::do_advance_ctu() 10 3.175 3.182 3.186 91.45% Castro::construct_ctu_hydro_source() 10 2.404 2.407 2.41 69.17% Gravity::make_radial_gravity() 21 0.3109 0.3288 0.3408 9.78% AmrLevel::FillPatch() 41 0.1941 0.2196 0.2347 6.73% Gravity::get_new_grav_vector() 11 0.2131 0.2143 0.2159 6.20% Castro::construct_old_gravity() 10 0.1845 0.2011 0.2141 6.15% Gravity::get_old_grav_vector() 10 0.1833 0.2002 0.2134 6.12% Castro::initialize_do_advance() 10 0.1659 0.18 0.1957 5.62% FillPatchIterator::Initialize 41 0.1644 0.1832 0.1953 5.61% Castro::construct_new_gravity() 10 0.19 0.191 0.1921 5.51% Amr::init() 1 0.1817 0.1826 0.1828 5.25% Amr::initialInit() 1 0.1667 0.1676 0.1679 4.82% check_for_negative_density() 10 0.09204 0.1342 0.1562 4.48% FillPatchIterator::FillFromLevel0() 41 0.1268 0.1382 0.1472 4.22% FillPatchSingleLevel 41 0.1267 0.1381 0.1471 4.22% Amr::InitializeInit() 1 0.05866 0.09449 0.1397 4.01% Amr::defBaseLevel() 1 0.05866 0.09448 0.1397 4.01% Castro::expand_state() 10 0.1104 0.1241 0.1391 3.99% Castro::initData() 1 0.04142 0.07667 0.1213 3.48% Castro::clean_state() 62 0.1132 0.1174 0.1205 3.46% FabArray::ParallelCopy() 41 0.09747 0.1058 0.1135 3.26% Castro::estTimeStep() 21 0.0225 0.07273 0.1128 3.24% Amr::FinalizeInit() 1 0.02703 0.07314 0.1092 3.13% Castro::do_old_sources() 10 0.0923 0.1018 0.1059 3.04% amrex::Copy() 193 0.0805 0.08713 0.09764 2.80% Castro::computeInitialDt() 2 0.00213 0.04825 0.08431 2.42% Castro::initialize_advance() 10 0.07071 0.07569 0.08177 2.35% FabArray::setVal() 143 0.06768 0.07409 0.07859 2.26% FabArray::ParallelCopy_finish() 41 0.05437 0.0632 0.07025 2.02% Castro::do_new_sources() 10 0.06171 0.06578 0.06957 2.00% Castro::computeTemp() 63 0.06076 0.06484 0.06734 1.93% Castro::reset_internal_energy(MultiFab) 63 0.04314 0.04638 0.04849 1.39% Castro::normalize_species() 62 0.0451 0.04706 0.04842 1.39% Castro::reset_internal_energy(Fab) 1008 0.04286 0.04608 0.04819 1.38% FabArray::ParallelCopy_nowait() 41 0.03994 0.0425 0.04378 1.26% StateDataPhysBCFunct::() 41 0.02919 0.03219 0.03447 0.99% StateData::FillBoundary(geom) 41 0.02907 0.03206 0.03432 0.99% Castro::construct_new_source() 50 0.02937 0.0311 0.03268 0.94% Gravity::interpolate_monopole_grav() 21 0.02683 0.02705 0.02749 0.79% Castro::construct_new_gravity_source() 10 0.02331 0.02474 0.02601 0.75% Castro::post_init() 1 0.02421 0.02433 0.02444 0.70% Amr::writePlotFile() 2 0.02248 0.02261 0.02269 0.65% Castro::finalize_do_advance() 10 0.01292 0.01698 0.0211 0.61% Castro::post_timestep() 10 0.0157 0.01617 0.01655 0.47% Castro::check_for_nan() 20 0.01068 0.01277 0.01561 0.45% MultiFab::contains_nan() 20 0.01065 0.01275 0.01559 0.45% FabArray::setDomainBndry() 41 0.007632 0.01096 0.01357 0.39% Castro::apply_source_to_state() 20 0.01185 0.01294 0.01356 0.39% FabArray::Saxpy() 20 0.01181 0.01288 0.01351 0.39% VisMF::Write(FabArray) 2 0.009135 0.00964 0.01208 0.35% Castro::Castro() 1 0.01059 0.0111 0.01191 0.34% Castro::construct_old_source() 50 0.009264 0.009525 0.009958 0.29% Castro::construct_old_gravity_source() 10 0.009198 0.009457 0.009873 0.28% Castro::computeNewDt() 9 0.008785 0.008797 0.008804 0.25% Castro::initMFs() 1 0.006669 0.007001 0.008685 0.25% Other 261 0.02683 0.03096 0.03417 0.98% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 28 B 34 B 41 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8657 KiB 8671 KiB 8674 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6752 KiB 6761 KiB 6764 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7129 KiB 7140 KiB 7142 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4554 KiB 4562 KiB 4568 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 209 KiB 238 KiB 261 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 16 KiB 16 KiB 19 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2802 KiB 2807 KiB 2808 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 227 KiB 240 KiB 249 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 41 KiB 46 KiB 51 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2026 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 78 KiB 79 KiB 79 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 67 KiB 73 KiB 78 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.06-22-g1d307c2c661a-dirty) finalized