Initializing AMReX (25.06-22-g1d307c2c661a-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.06-22-g1d307c2c661a-dirty) initialized Starting run at 05:19:19 UTC on 2025-09-16. Successfully read inputs file ... Castro git describe: 25.09.1-8-g55473758e AMReX git describe: 25.06-22-g1d307c2c6-dirty Microphysics git describe: 25.09-4-g4bd5b169 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014084285 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.346986557 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.3386104 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.31346882 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.312677754 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.348410491 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.302520729 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.298034689 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.300741304 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.29746331 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.298187233 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007456224 seconds Ending run at 05:19:22 UTC on 2025-09-16. Run time = 3.369954652 Run time without initialization = 3.169475868 Average number of zones advanced per microsecond: 0.827 Average number of zones advanced per microsecond per rank: 0.103 TinyProfiler total time across processes [min...avg...max]: 3.3646 ... 3.3682 ... 3.3700 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2025 2.2192 2.2440 66.59% Gravity::make_radial_gravity() 21 0.2886 0.2965 0.3107 9.22% Castro::initData() 1 0.039 0.07473 0.1255 3.73% Castro::estTimeStep() 21 0.0293 0.08294 0.1212 3.60% amrex::Copy() 193 0.06725 0.08114 0.09338 2.77% check_for_negative_density() 10 0.04993 0.07473 0.09293 2.76% FabArray::ParallelCopy_finish() 41 0.04073 0.0581 0.09133 2.71% FabArray::setVal() 143 0.05497 0.0671 0.07297 2.17% Castro::normalize_species() 62 0.04538 0.05342 0.06617 1.96% Castro::reset_internal_energy(Fab) 1008 0.04344 0.04596 0.04839 1.44% FabArray::ParallelCopy_nowait() 41 0.03547 0.04034 0.04222 1.25% FillPatchIterator::Initialize 41 0.02868 0.03212 0.03524 1.05% StateData::FillBoundary(geom) 41 0.02894 0.03094 0.03342 0.99% Gravity::interpolate_monopole_grav() 21 0.02645 0.02704 0.0283 0.84% Castro::construct_new_gravity_source() 10 0.0229 0.0239 0.02504 0.74% Castro::computeTemp() 63 0.0175 0.01819 0.01885 0.56% Castro::initialize_do_advance() 10 0.01217 0.01618 0.0176 0.52% Castro::initialize_advance() 10 0.00523 0.01093 0.01304 0.39% FabArray::Saxpy() 20 0.01041 0.01214 0.01302 0.39% MultiFab::contains_nan() 20 0.01037 0.01131 0.01241 0.37% Amr::writePlotFile() 2 0.007289 0.009982 0.01186 0.35% FabArray::setDomainBndry() 41 0.007209 0.009596 0.01171 0.35% VisMF::Write(FabArray) 2 0.00864 0.009304 0.01167 0.35% Castro::initMFs() 1 0.006242 0.007463 0.01023 0.30% Castro::construct_old_gravity_source() 10 0.006394 0.008817 0.009447 0.28% StateData::define() 4 0.005143 0.006017 0.008004 0.24% Castro::construct_new_source() 50 0.006006 0.006343 0.00656 0.19% Amr::coarseTimeStep() 10 0.001969 0.004173 0.005794 0.17% main() 1 0.003918 0.004124 0.004305 0.13% Gravity::get_new_grav_vector() 11 0.002952 0.003295 0.003657 0.11% Gravity::get_old_grav_vector() 10 0.001619 0.002073 0.002618 0.08% Castro::finalize_do_advance() 10 0.0005301 0.001125 0.001262 0.04% AmrLevel::FillPatch() 41 0.0008289 0.0009813 0.001095 0.03% Amr::timeStep() 10 0.0001231 0.0001926 0.000507 0.02% Castro::reset_internal_energy(MultiFab) 63 0.0002795 0.0002942 0.0003359 0.01% Castro::do_advance_ctu() 10 0.000158 0.0001756 0.0002108 0.01% Castro::clean_state() 62 0.0001506 0.0001617 0.0001767 0.01% StateDataPhysBCFunct::() 41 9.978e-05 0.0001141 0.0001246 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001017 0.0001062 0.0001154 0.00% FabArray::ParallelCopy() 41 8.958e-05 9.974e-05 0.0001112 0.00% Castro::do_old_sources() 10 7.99e-05 8.996e-05 0.000109 0.00% Castro::construct_old_source() 50 5.283e-05 6.819e-05 9.101e-05 0.00% Amr::FinalizeInit() 1 3.373e-06 1.472e-05 8.931e-05 0.00% FillPatchSingleLevel 41 6.65e-05 7.11e-05 7.768e-05 0.00% Castro::Castro() 1 4.385e-05 6.393e-05 7.703e-05 0.00% Castro::do_new_sources() 10 5.527e-05 6.396e-05 7.436e-05 0.00% Castro::construct_old_gravity() 10 3.454e-05 4.309e-05 6.405e-05 0.00% Castro::advance() 10 4.04e-05 4.748e-05 6.232e-05 0.00% Castro::apply_source_to_state() 20 4.654e-05 5.315e-05 6.199e-05 0.00% Castro::subcycle_advance_ctu() 10 4.389e-05 4.844e-05 6.053e-05 0.00% Amr::defBaseLevel() 1 4.254e-05 4.678e-05 5.296e-05 0.00% Castro::construct_new_gravity() 10 3.087e-05 3.537e-05 4.129e-05 0.00% Castro::expand_state() 10 1.986e-05 2.842e-05 4.116e-05 0.00% Castro::check_for_nan() 20 2.453e-05 2.822e-05 3.82e-05 0.00% Castro::post_timestep() 10 1.434e-05 1.747e-05 2.277e-05 0.00% AmrLevel::AmrLevel(dm) 1 9.72e-06 1.355e-05 2.25e-05 0.00% Castro::post_init() 1 1.409e-05 1.576e-05 1.881e-05 0.00% Castro::computeNewDt() 9 9.004e-06 1.006e-05 1.292e-05 0.00% Amr::InitializeInit() 1 2.721e-06 3.888e-06 7.844e-06 0.00% Castro::computeInitialDt() 2 3.357e-06 3.583e-06 3.827e-06 0.00% Amr::init() 1 1.974e-06 2.587e-06 3.117e-06 0.00% Amr::initialInit() 1 1.806e-06 2.271e-06 2.725e-06 0.00% Other 256 0.01083 0.01595 0.01957 0.58% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.365 3.368 3.37 100.00% Amr::coarseTimeStep() 10 3.158 3.158 3.158 93.70% Amr::timeStep() 10 3.142 3.144 3.146 93.35% Castro::advance() 10 3.126 3.126 3.127 92.78% Castro::subcycle_advance_ctu() 10 3.047 3.052 3.068 91.05% Castro::do_advance_ctu() 10 3.046 3.052 3.068 91.05% Castro::construct_ctu_hydro_source() 10 2.31 2.317 2.321 68.87% Gravity::make_radial_gravity() 21 0.3047 0.3124 0.3241 9.62% AmrLevel::FillPatch() 41 0.1851 0.2031 0.2163 6.42% Gravity::get_new_grav_vector() 11 0.2056 0.2077 0.2097 6.22% Amr::init() 1 0.1949 0.1984 0.2002 5.94% Castro::construct_old_gravity() 10 0.1835 0.1887 0.1983 5.88% Gravity::get_old_grav_vector() 10 0.1827 0.188 0.1976 5.86% FillPatchIterator::Initialize 41 0.1546 0.1716 0.1922 5.70% Amr::initialInit() 1 0.1804 0.184 0.1859 5.52% Castro::construct_new_gravity() 10 0.1815 0.1837 0.1854 5.50% Castro::initialize_do_advance() 10 0.1597 0.1624 0.1687 5.01% FillPatchIterator::FillFromLevel0() 41 0.1139 0.1299 0.1563 4.64% FillPatchSingleLevel 41 0.1138 0.1298 0.1562 4.63% Amr::InitializeInit() 1 0.0637 0.1 0.1522 4.52% Amr::defBaseLevel() 1 0.06369 0.1 0.1522 4.52% Castro::clean_state() 62 0.1139 0.1232 0.1338 3.97% Castro::initData() 1 0.04327 0.07915 0.1297 3.85% FabArray::ParallelCopy() 41 0.08316 0.09864 0.127 3.77% Amr::FinalizeInit() 1 0.02848 0.08397 0.1219 3.62% Castro::estTimeStep() 21 0.0293 0.08294 0.1212 3.60% Castro::expand_state() 10 0.1054 0.1098 0.1209 3.59% Castro::do_old_sources() 10 0.09056 0.1001 0.111 3.29% Castro::computeInitialDt() 2 0.002358 0.05795 0.09566 2.84% amrex::Copy() 193 0.06725 0.08114 0.09338 2.77% check_for_negative_density() 10 0.04993 0.07473 0.09293 2.76% FabArray::ParallelCopy_finish() 41 0.04073 0.0581 0.09133 2.71% Castro::initialize_advance() 10 0.05414 0.07066 0.07666 2.27% FabArray::setVal() 143 0.05497 0.0671 0.07297 2.17% Castro::do_new_sources() 10 0.05943 0.06443 0.06769 2.01% Castro::computeTemp() 63 0.06123 0.06444 0.06753 2.00% Castro::normalize_species() 62 0.04538 0.05342 0.06617 1.96% Castro::reset_internal_energy(MultiFab) 63 0.04372 0.04625 0.04868 1.44% Castro::reset_internal_energy(Fab) 1008 0.04344 0.04596 0.04839 1.44% FabArray::ParallelCopy_nowait() 41 0.0356 0.04045 0.04233 1.26% StateDataPhysBCFunct::() 41 0.02906 0.03106 0.03353 0.99% StateData::FillBoundary(geom) 41 0.02894 0.03094 0.03342 0.99% Castro::construct_new_source() 50 0.02891 0.03024 0.0316 0.94% Gravity::interpolate_monopole_grav() 21 0.02645 0.02704 0.0283 0.84% Castro::post_init() 1 0.02493 0.02513 0.0253 0.75% Castro::construct_new_gravity_source() 10 0.0229 0.0239 0.02504 0.74% Amr::writePlotFile() 2 0.02181 0.02198 0.02244 0.67% Castro::finalize_do_advance() 10 0.01404 0.01745 0.02211 0.66% Castro::post_timestep() 10 0.01539 0.0173 0.0195 0.58% Castro::Castro() 1 0.009969 0.01124 0.01431 0.42% Castro::apply_source_to_state() 20 0.01046 0.01219 0.01308 0.39% FabArray::Saxpy() 20 0.01041 0.01214 0.01302 0.39% Castro::check_for_nan() 20 0.0104 0.01133 0.01243 0.37% MultiFab::contains_nan() 20 0.01037 0.01131 0.01241 0.37% FabArray::setDomainBndry() 41 0.007209 0.009596 0.01171 0.35% VisMF::Write(FabArray) 2 0.00864 0.009304 0.01167 0.35% Castro::initMFs() 1 0.006242 0.007463 0.01023 0.30% Castro::construct_old_source() 50 0.006447 0.008885 0.009538 0.28% Castro::construct_old_gravity_source() 10 0.006394 0.008817 0.009447 0.28% Castro::computeNewDt() 9 0.008667 0.008683 0.008699 0.26% AmrLevel::AmrLevel(dm) 1 0.005153 0.006031 0.008025 0.24% StateData::define() 4 0.005143 0.006017 0.008004 0.24% Other 256 0.01555 0.02475 0.03078 0.91% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 33 B 39 B 49 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8651 KiB 8661 KiB 8665 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6705 KiB 6715 KiB 6723 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7123 KiB 7134 KiB 7142 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4517 KiB 4527 KiB 4552 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 207 KiB 224 KiB 243 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 14 KiB 16 KiB 19 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2779 KiB 2784 KiB 2787 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 230 KiB 236 KiB 245 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 37 KiB 43 KiB 58 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2025 KiB 2027 KiB 2029 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 78 KiB 79 KiB 80 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 69 KiB 71 KiB 75 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.06-22-g1d307c2c661a-dirty) finalized