Initializing AMReX (25.06-22-g1d307c2c661a-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.06-22-g1d307c2c661a-dirty) initialized Starting run at 05:17:42 UTC on 2025-09-17. Successfully read inputs file ... Castro git describe: 25.09.1-8-g55473758e AMReX git describe: 25.06-22-g1d307c2c6-dirty Microphysics git describe: 25.09-5-g5b3bbfe7 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014748457 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.355595152 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.331146856 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.326655235 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.325145606 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.373288303 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.309372362 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.303421288 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.319169804 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.327453717 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.301255011 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007489204 seconds Ending run at 05:17:46 UTC on 2025-09-17. Run time = 3.452588677 Run time without initialization = 3.284972538 Average number of zones advanced per microsecond: 0.798 Average number of zones advanced per microsecond per rank: 0.100 TinyProfiler total time across processes [min...avg...max]: 3.4514 ... 3.4521 ... 3.4529 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2065 2.2724 2.3027 66.69% Gravity::make_radial_gravity() 21 0.2906 0.2964 0.3094 8.96% check_for_negative_density() 10 0.08887 0.1198 0.1884 5.46% Castro::initData() 1 0.03718 0.07087 0.103 2.98% Castro::estTimeStep() 21 0.02184 0.0583 0.09405 2.72% amrex::Copy() 193 0.08599 0.08819 0.09066 2.63% FabArray::setVal() 143 0.07032 0.07232 0.0752 2.18% FabArray::ParallelCopy_finish() 41 0.04982 0.0539 0.0564 1.63% Castro::normalize_species() 62 0.04553 0.04694 0.04833 1.40% FabArray::ParallelCopy_nowait() 41 0.04158 0.04388 0.04832 1.40% Castro::reset_internal_energy(Fab) 1008 0.04364 0.0464 0.04791 1.39% FillPatchIterator::Initialize 41 0.03048 0.03478 0.0369 1.07% StateData::FillBoundary(geom) 41 0.02861 0.03248 0.03519 1.02% Gravity::interpolate_monopole_grav() 21 0.02665 0.02758 0.03 0.87% Castro::construct_new_gravity_source() 10 0.02394 0.02484 0.02605 0.75% Castro::computeTemp() 63 0.01774 0.0185 0.01901 0.55% Castro::initialize_do_advance() 10 0.01653 0.01765 0.01843 0.53% Castro::initialize_advance() 10 0.01088 0.01246 0.0142 0.41% FabArray::setDomainBndry() 41 0.008105 0.012 0.0139 0.40% FabArray::Saxpy() 20 0.01217 0.01311 0.0137 0.40% VisMF::Write(FabArray) 2 0.009066 0.00967 0.01216 0.35% MultiFab::contains_nan() 20 0.01078 0.01135 0.01185 0.34% Amr::writePlotFile() 2 0.00734 0.009962 0.01071 0.31% Castro::construct_old_gravity_source() 10 0.009196 0.009775 0.01011 0.29% Castro::initMFs() 1 0.006505 0.006973 0.008156 0.24% Castro::construct_new_source() 50 0.006198 0.006431 0.006564 0.19% main() 1 0.003553 0.003944 0.004364 0.13% Gravity::get_new_grav_vector() 11 0.00304 0.003759 0.004186 0.12% Gravity::get_old_grav_vector() 10 0.001722 0.002166 0.002387 0.07% Amr::coarseTimeStep() 10 0.001168 0.001552 0.002076 0.06% Castro::finalize_do_advance() 10 0.001295 0.001332 0.001381 0.04% AmrLevel::FillPatch() 41 0.001077 0.001129 0.001222 0.04% Amr::timeStep() 10 0.0001474 0.0001942 0.000383 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002855 0.0003 0.0003248 0.01% Castro::do_advance_ctu() 10 0.00016 0.0001834 0.000226 0.01% Castro::clean_state() 62 0.0001558 0.0001696 0.000183 0.01% StateDataPhysBCFunct::() 41 0.0001102 0.000128 0.0001698 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001018 0.0001183 0.0001434 0.00% FabArray::ParallelCopy() 41 9.243e-05 0.0001061 0.0001172 0.00% Castro::do_old_sources() 10 8.379e-05 9.795e-05 0.0001127 0.00% FillPatchSingleLevel 41 7.451e-05 8.093e-05 9.195e-05 0.00% Castro::Castro() 1 5.08e-05 6.414e-05 8.774e-05 0.00% Castro::construct_old_source() 50 6.064e-05 7.3e-05 7.937e-05 0.00% Castro::do_new_sources() 10 5.848e-05 6.53e-05 7.363e-05 0.00% Amr::FinalizeInit() 1 4.406e-06 1.34e-05 7.191e-05 0.00% Castro::apply_source_to_state() 20 4.395e-05 5.538e-05 6.239e-05 0.00% Castro::advance() 10 3.78e-05 5.156e-05 6.21e-05 0.00% Castro::subcycle_advance_ctu() 10 4.556e-05 4.991e-05 5.447e-05 0.00% Amr::defBaseLevel() 1 4.295e-05 4.591e-05 4.983e-05 0.00% Castro::construct_old_gravity() 10 3.859e-05 4.247e-05 4.839e-05 0.00% Castro::construct_new_gravity() 10 3.326e-05 3.708e-05 4.189e-05 0.00% Castro::check_for_nan() 20 2.547e-05 2.799e-05 3.517e-05 0.00% Castro::expand_state() 10 2.417e-05 2.677e-05 3.03e-05 0.00% Castro::post_init() 1 1.626e-05 1.921e-05 2.243e-05 0.00% Castro::post_timestep() 10 1.532e-05 1.782e-05 1.991e-05 0.00% Amr::init() 1 2.102e-06 4.729e-06 1.846e-05 0.00% Castro::computeNewDt() 9 9.191e-06 9.843e-06 1.039e-05 0.00% Amr::InitializeInit() 1 2.633e-06 3.276e-06 5.943e-06 0.00% Castro::computeInitialDt() 2 3.508e-06 3.884e-06 4.245e-06 0.00% Amr::initialInit() 1 1.681e-06 2.105e-06 2.703e-06 0.00% Other 261 0.01649 0.01922 0.02137 0.62% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.451 3.452 3.453 100.00% Amr::coarseTimeStep() 10 3.273 3.273 3.273 94.80% Amr::timeStep() 10 3.261 3.262 3.262 94.48% Castro::advance() 10 3.245 3.246 3.246 94.00% Castro::subcycle_advance_ctu() 10 3.167 3.168 3.171 91.83% Castro::do_advance_ctu() 10 3.167 3.168 3.171 91.82% Castro::construct_ctu_hydro_source() 10 2.411 2.414 2.416 69.98% Gravity::make_radial_gravity() 21 0.3092 0.3141 0.3248 9.41% AmrLevel::FillPatch() 41 0.194 0.213 0.222 6.43% Gravity::get_new_grav_vector() 11 0.2077 0.2092 0.2103 6.09% Castro::construct_old_gravity() 10 0.1905 0.1953 0.2039 5.91% Gravity::get_old_grav_vector() 10 0.1898 0.1946 0.2032 5.88% check_for_negative_density() 10 0.08887 0.1198 0.1884 5.46% Castro::construct_new_gravity() 10 0.1852 0.1862 0.1872 5.42% FillPatchIterator::Initialize 41 0.1647 0.1776 0.1846 5.35% Castro::initialize_do_advance() 10 0.1619 0.169 0.1734 5.02% Amr::init() 1 0.1665 0.1671 0.1676 4.86% Amr::initialInit() 1 0.1515 0.1521 0.1526 4.42% FillPatchIterator::FillFromLevel0() 41 0.1235 0.1308 0.1343 3.89% FillPatchSingleLevel 41 0.1233 0.1307 0.1342 3.89% Amr::InitializeInit() 1 0.05811 0.09211 0.1248 3.61% Amr::defBaseLevel() 1 0.05811 0.09211 0.1248 3.61% Castro::clean_state() 62 0.1138 0.1178 0.1203 3.48% Castro::expand_state() 10 0.1064 0.1137 0.1183 3.43% Castro::initData() 1 0.04126 0.07474 0.1065 3.08% Castro::do_old_sources() 10 0.09553 0.1025 0.1058 3.06% FabArray::ParallelCopy() 41 0.09208 0.098 0.1015 2.94% Amr::FinalizeInit() 1 0.0269 0.05998 0.09431 2.73% Castro::estTimeStep() 21 0.02184 0.0583 0.09405 2.72% amrex::Copy() 193 0.08599 0.08819 0.09066 2.63% Castro::initialize_advance() 10 0.07155 0.0742 0.07559 2.19% FabArray::setVal() 143 0.07032 0.07232 0.0752 2.18% Castro::do_new_sources() 10 0.06378 0.06615 0.06962 2.02% Castro::computeInitialDt() 2 0.002148 0.03513 0.06947 2.01% Castro::computeTemp() 63 0.06169 0.0652 0.06702 1.94% FabArray::ParallelCopy_finish() 41 0.04982 0.0539 0.0564 1.63% FabArray::ParallelCopy_nowait() 41 0.04169 0.04399 0.04842 1.40% Castro::normalize_species() 62 0.04553 0.04694 0.04833 1.40% Castro::reset_internal_energy(MultiFab) 63 0.04394 0.0467 0.0482 1.40% Castro::reset_internal_energy(Fab) 1008 0.04364 0.0464 0.04791 1.39% StateDataPhysBCFunct::() 41 0.02872 0.0326 0.0353 1.02% StateData::FillBoundary(geom) 41 0.02861 0.03248 0.03519 1.02% Castro::construct_new_source() 50 0.03029 0.03127 0.03248 0.94% Gravity::interpolate_monopole_grav() 21 0.02665 0.02758 0.03 0.87% Castro::construct_new_gravity_source() 10 0.02394 0.02484 0.02605 0.75% Castro::post_init() 1 0.02412 0.02429 0.0244 0.71% Amr::writePlotFile() 2 0.02249 0.0226 0.02275 0.66% Castro::finalize_do_advance() 10 0.0125 0.016 0.01868 0.54% Castro::post_timestep() 10 0.01571 0.01621 0.01641 0.48% FabArray::setDomainBndry() 41 0.008105 0.012 0.0139 0.40% Castro::apply_source_to_state() 20 0.01222 0.01316 0.01376 0.40% FabArray::Saxpy() 20 0.01217 0.01311 0.0137 0.40% VisMF::Write(FabArray) 2 0.009066 0.00967 0.01216 0.35% Castro::check_for_nan() 20 0.01081 0.01138 0.01188 0.34% MultiFab::contains_nan() 20 0.01078 0.01135 0.01185 0.34% Castro::Castro() 1 0.01037 0.0109 0.01185 0.34% Castro::construct_old_source() 50 0.009275 0.009848 0.01019 0.29% Castro::construct_old_gravity_source() 10 0.009196 0.009775 0.01011 0.29% Castro::computeNewDt() 9 0.008505 0.008521 0.00854 0.25% Castro::initMFs() 1 0.006505 0.006973 0.008156 0.24% Other 261 0.02674 0.03066 0.03416 0.99% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 31 B 33 B 36 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8661 KiB 8671 KiB 8675 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6785 KiB 6790 KiB 6792 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7134 KiB 7141 KiB 7143 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4582 KiB 4584 KiB 4585 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 208 KiB 228 KiB 237 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 16 KiB 16 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2817 KiB 2820 KiB 2820 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 228 KiB 231 KiB 239 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 40 KiB 41 KiB 42 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2030 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 77 KiB 77 KiB 78 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 70 KiB 72 KiB 75 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.06-22-g1d307c2c661a-dirty) finalized