Initializing AMReX (25.06-22-g1d307c2c661a-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.06-22-g1d307c2c661a-dirty) initialized Starting run at 05:17:45 UTC on 2025-09-18. Successfully read inputs file ... Castro git describe: 25.09.1-9-gb19db656e AMReX git describe: 25.06-22-g1d307c2c6-dirty Microphysics git describe: 25.09-5-g5b3bbfe7 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014805126 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.348866762 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.356679755 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.328974381 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.321620241 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.365264949 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.306071352 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.297525621 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.297290223 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.296909263 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.298784448 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007420617 seconds Ending run at 05:17:49 UTC on 2025-09-18. Run time = 3.399589721 Run time without initialization = 3.229977775 Average number of zones advanced per microsecond: 0.812 Average number of zones advanced per microsecond per rank: 0.101 TinyProfiler total time across processes [min...avg...max]: 3.3990 ... 3.3994 ... 3.3996 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1998 2.2306 2.2694 66.75% Gravity::make_radial_gravity() 21 0.2891 0.3052 0.3169 9.32% check_for_negative_density() 10 0.05476 0.09444 0.128 3.76% Castro::initData() 1 0.03707 0.07363 0.1027 3.02% Castro::estTimeStep() 21 0.02774 0.05586 0.09556 2.81% amrex::Copy() 193 0.08077 0.08692 0.09385 2.76% FabArray::setVal() 143 0.06795 0.07351 0.07785 2.29% FabArray::ParallelCopy_finish() 41 0.05008 0.05619 0.06433 1.89% Castro::normalize_species() 62 0.04689 0.05138 0.05692 1.67% Castro::reset_internal_energy(Fab) 1008 0.04229 0.04686 0.04934 1.45% FabArray::ParallelCopy_nowait() 41 0.04043 0.04265 0.04426 1.30% FillPatchIterator::Initialize 41 0.02987 0.0336 0.03517 1.03% StateData::FillBoundary(geom) 41 0.03049 0.03246 0.03469 1.02% Gravity::interpolate_monopole_grav() 21 0.02645 0.02669 0.02708 0.80% Castro::construct_new_gravity_source() 10 0.02395 0.02476 0.02627 0.77% Castro::computeTemp() 63 0.01697 0.01888 0.0214 0.63% Castro::initialize_do_advance() 10 0.01669 0.01789 0.01946 0.57% MultiFab::contains_nan() 20 0.01115 0.01242 0.01506 0.44% Castro::initialize_advance() 10 0.01129 0.01302 0.01485 0.44% FabArray::Saxpy() 20 0.01172 0.01271 0.01404 0.41% FabArray::setDomainBndry() 41 0.008725 0.01063 0.01302 0.38% VisMF::Write(FabArray) 2 0.009129 0.009526 0.01183 0.35% Castro::construct_old_gravity_source() 10 0.008998 0.009684 0.01025 0.30% Amr::writePlotFile() 2 0.007502 0.00958 0.01007 0.30% Castro::enforce_min_density() 62 0.00598 0.006686 0.009135 0.27% Castro::construct_new_source() 50 0.00609 0.006432 0.006716 0.20% Gravity::get_old_grav_vector() 10 0.001676 0.002703 0.004584 0.13% main() 1 0.003582 0.003975 0.00423 0.12% Gravity::get_new_grav_vector() 11 0.002887 0.003399 0.004022 0.12% Amr::coarseTimeStep() 10 0.001801 0.003153 0.003908 0.11% Castro::finalize_do_advance() 10 0.001265 0.001309 0.001367 0.04% AmrLevel::FillPatch() 41 0.0008274 0.0008848 0.0009802 0.03% Amr::timeStep() 10 0.0001435 0.0001941 0.00047 0.01% Castro::reset_internal_energy(MultiFab) 63 0.000275 0.0003005 0.0003576 0.01% Castro::do_advance_ctu() 10 0.0001535 0.0001925 0.0002324 0.01% Castro::clean_state() 62 0.0001632 0.0001747 0.0001866 0.01% StateDataPhysBCFunct::() 41 0.0001022 0.000122 0.0001414 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001016 0.0001182 0.0001284 0.00% FabArray::ParallelCopy() 41 9.235e-05 0.0001018 0.0001178 0.00% Castro::do_old_sources() 10 8.949e-05 9.87e-05 0.0001091 0.00% Amr::FinalizeInit() 1 3.709e-06 1.617e-05 9.897e-05 0.00% FillPatchSingleLevel 41 7.036e-05 7.741e-05 8.5e-05 0.00% Castro::construct_old_source() 50 6.186e-05 7.122e-05 7.871e-05 0.00% Amr::defBaseLevel() 1 4.408e-05 6.286e-05 7.783e-05 0.00% Castro::do_new_sources() 10 5.433e-05 6.378e-05 7.14e-05 0.00% Castro::Castro() 1 5.817e-05 6.493e-05 7.105e-05 0.00% Castro::subcycle_advance_ctu() 10 4.353e-05 5.276e-05 6.355e-05 0.00% Castro::apply_source_to_state() 20 4.186e-05 5.258e-05 6.011e-05 0.00% Castro::advance() 10 4.315e-05 4.98e-05 5.909e-05 0.00% Castro::construct_old_gravity() 10 3.851e-05 4.903e-05 5.874e-05 0.00% Castro::construct_new_gravity() 10 3.142e-05 3.793e-05 4.653e-05 0.00% Castro::expand_state() 10 2.127e-05 2.949e-05 4.323e-05 0.00% Castro::check_for_nan() 20 2.273e-05 2.878e-05 3.759e-05 0.00% Castro::post_init() 1 1.431e-05 1.642e-05 1.983e-05 0.00% Castro::post_timestep() 10 1.195e-05 1.677e-05 1.977e-05 0.00% Castro::computeNewDt() 9 8.826e-06 9.61e-06 1.075e-05 0.00% Amr::InitializeInit() 1 2.832e-06 3.643e-06 6.433e-06 0.00% Castro::computeInitialDt() 2 3.136e-06 3.474e-06 4.22e-06 0.00% Amr::init() 1 1.867e-06 2.383e-06 2.767e-06 0.00% Amr::initialInit() 1 1.743e-06 2.006e-06 2.494e-06 0.00% Other 200 0.01689 0.01974 0.02126 0.63% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.399 3.399 3.4 100.00% Amr::coarseTimeStep() 10 3.218 3.218 3.218 94.67% Amr::timeStep() 10 3.205 3.206 3.207 94.33% Castro::advance() 10 3.188 3.189 3.189 93.80% Castro::subcycle_advance_ctu() 10 3.106 3.108 3.112 91.54% Castro::do_advance_ctu() 10 3.106 3.108 3.112 91.54% Castro::construct_ctu_hydro_source() 10 2.345 2.347 2.349 69.09% Gravity::make_radial_gravity() 21 0.3054 0.3222 0.3333 9.80% AmrLevel::FillPatch() 41 0.1957 0.2114 0.2207 6.49% Gravity::get_new_grav_vector() 11 0.2103 0.2112 0.2122 6.24% Castro::construct_old_gravity() 10 0.1863 0.1969 0.21 6.18% Gravity::get_old_grav_vector() 10 0.1852 0.1961 0.2092 6.15% Castro::construct_new_gravity() 10 0.1842 0.1855 0.1865 5.49% FillPatchIterator::Initialize 41 0.1651 0.176 0.1839 5.41% Castro::initialize_do_advance() 10 0.1621 0.172 0.1824 5.37% Amr::init() 1 0.1691 0.1692 0.1692 4.98% Amr::initialInit() 1 0.1541 0.1544 0.1547 4.55% FillPatchIterator::FillFromLevel0() 41 0.1253 0.1318 0.1388 4.08% FillPatchSingleLevel 41 0.1252 0.1317 0.1387 4.08% Castro::clean_state() 62 0.1177 0.1234 0.1313 3.86% check_for_negative_density() 10 0.05476 0.09444 0.128 3.76% Amr::InitializeInit() 1 0.05686 0.09498 0.1247 3.67% Amr::defBaseLevel() 1 0.05686 0.09497 0.1247 3.67% Castro::expand_state() 10 0.1078 0.1136 0.1181 3.47% Castro::do_old_sources() 10 0.09432 0.1055 0.1126 3.31% FabArray::ParallelCopy() 41 0.0935 0.09905 0.1069 3.14% Castro::initData() 1 0.04124 0.07774 0.1068 3.14% Amr::FinalizeInit() 1 0.02981 0.05946 0.09783 2.88% Castro::estTimeStep() 21 0.02774 0.05586 0.09556 2.81% amrex::Copy() 193 0.08077 0.08692 0.09385 2.76% Castro::initialize_advance() 10 0.07313 0.07677 0.07869 2.31% FabArray::setVal() 143 0.06795 0.07351 0.07785 2.29% Castro::computeTemp() 63 0.05954 0.06604 0.07109 2.09% Castro::computeInitialDt() 2 0.002148 0.03188 0.07002 2.06% Castro::do_new_sources() 10 0.06295 0.06627 0.06956 2.05% FabArray::ParallelCopy_finish() 41 0.05008 0.05619 0.06433 1.89% Castro::normalize_species() 62 0.04689 0.05138 0.05692 1.67% Castro::reset_internal_energy(MultiFab) 63 0.04257 0.04716 0.04969 1.46% Castro::reset_internal_energy(Fab) 1008 0.04229 0.04686 0.04934 1.45% FabArray::ParallelCopy_nowait() 41 0.04055 0.04276 0.04438 1.31% StateDataPhysBCFunct::() 41 0.0306 0.03258 0.03481 1.02% StateData::FillBoundary(geom) 41 0.03049 0.03246 0.03469 1.02% Castro::construct_new_source() 50 0.03004 0.03119 0.03299 0.97% Castro::post_init() 1 0.02661 0.02684 0.02716 0.80% Gravity::interpolate_monopole_grav() 21 0.02645 0.02669 0.02708 0.80% Castro::construct_new_gravity_source() 10 0.02395 0.02476 0.02627 0.77% Amr::writePlotFile() 2 0.02202 0.02229 0.02248 0.66% Castro::finalize_do_advance() 10 0.01287 0.01685 0.02134 0.63% Castro::post_timestep() 10 0.01595 0.01681 0.01826 0.54% Castro::check_for_nan() 20 0.01118 0.01245 0.01509 0.44% MultiFab::contains_nan() 20 0.01115 0.01242 0.01506 0.44% Castro::apply_source_to_state() 20 0.01176 0.01276 0.01409 0.41% FabArray::Saxpy() 20 0.01172 0.01271 0.01404 0.41% FabArray::setDomainBndry() 41 0.008725 0.01063 0.01302 0.38% Castro::Castro() 1 0.009279 0.01104 0.01204 0.35% VisMF::Write(FabArray) 2 0.009129 0.009526 0.01183 0.35% Castro::construct_old_source() 50 0.009067 0.009755 0.01033 0.30% Castro::construct_old_gravity_source() 10 0.008998 0.009684 0.01025 0.30% Castro::enforce_min_density() 62 0.00598 0.006686 0.009135 0.27% Castro::computeNewDt() 9 0.008446 0.00845 0.008455 0.25% Other 200 0.02715 0.03118 0.03372 0.99% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 34 B 37 B 48 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8663 KiB 8671 KiB 8675 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6774 KiB 6779 KiB 6780 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7134 KiB 7142 KiB 7143 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4566 KiB 4568 KiB 4570 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 216 KiB 232 KiB 242 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 16 KiB 17 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2810 KiB 2813 KiB 2814 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 228 KiB 241 KiB 249 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 40 KiB 42 KiB 45 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2030 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 79 KiB 79 KiB 80 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 69 KiB 74 KiB 79 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.06-22-g1d307c2c661a-dirty) finalized