Initializing AMReX (25.06-22-g1d307c2c661a-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.06-22-g1d307c2c661a-dirty) initialized Starting run at 05:21:41 UTC on 2025-09-23. Successfully read inputs file ... Castro git describe: 25.09.1-11-ga9822320f AMReX git describe: 25.06-22-g1d307c2c6-dirty Microphysics git describe: 25.09-6-g322a214a reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014089057 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.34606448 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.319718093 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.316680646 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.341262701 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.363336877 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.314131185 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.300423778 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.299655659 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.297927908 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.29878832 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007503874 seconds Ending run at 05:21:44 UTC on 2025-09-23. Run time = 3.38484491 Run time without initialization = 3.210194383 Average number of zones advanced per microsecond: 0.817 Average number of zones advanced per microsecond per rank: 0.102 TinyProfiler total time across processes [min...avg...max]: 3.3830 ... 3.3840 ... 3.3849 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1920 2.2348 2.2843 67.49% Gravity::make_radial_gravity() 21 0.2825 0.2898 0.3072 9.08% check_for_negative_density() 10 0.05958 0.1079 0.1556 4.60% Castro::initData() 1 0.03695 0.07207 0.1108 3.27% Castro::estTimeStep() 21 0.02794 0.0664 0.1037 3.06% FabArray::ParallelCopy_finish() 41 0.03786 0.06142 0.09997 2.95% amrex::Copy() 193 0.06233 0.0785 0.08466 2.50% FabArray::setVal() 143 0.05275 0.06543 0.07704 2.28% Castro::normalize_species() 62 0.04585 0.04839 0.05413 1.60% Castro::reset_internal_energy(Fab) 1008 0.04532 0.04653 0.04722 1.40% FabArray::ParallelCopy_nowait() 41 0.03484 0.04088 0.04356 1.29% FillPatchIterator::Initialize 41 0.02791 0.03287 0.03732 1.10% StateData::FillBoundary(geom) 41 0.02993 0.03084 0.03262 0.96% Gravity::interpolate_monopole_grav() 21 0.02678 0.0271 0.02766 0.82% Castro::construct_new_gravity_source() 10 0.0231 0.02435 0.02618 0.77% FabArray::Saxpy() 20 0.01051 0.01418 0.02043 0.60% Castro::computeTemp() 63 0.01797 0.01847 0.01886 0.56% Castro::initialize_do_advance() 10 0.0115 0.01569 0.01703 0.50% FabArray::setDomainBndry() 41 0.006989 0.01001 0.01359 0.40% Castro::initialize_advance() 10 0.005227 0.01052 0.01353 0.40% Castro::construct_old_gravity_source() 10 0.006949 0.009732 0.01297 0.38% MultiFab::contains_nan() 20 0.01041 0.01115 0.01235 0.36% Amr::writePlotFile() 2 0.007095 0.009891 0.01215 0.36% VisMF::Write(FabArray) 2 0.008472 0.00945 0.01198 0.35% Castro::initMFs() 1 0.006392 0.006931 0.00843 0.25% Castro::construct_new_source() 50 0.005521 0.006238 0.006541 0.19% main() 1 0.003496 0.003879 0.004261 0.13% Gravity::get_new_grav_vector() 11 0.002808 0.003307 0.003799 0.11% Amr::coarseTimeStep() 10 0.000734 0.002619 0.003448 0.10% Gravity::get_old_grav_vector() 10 0.00144 0.002035 0.002519 0.07% Castro::finalize_do_advance() 10 0.0005086 0.001067 0.001226 0.04% AmrLevel::FillPatch() 41 0.0007342 0.0009313 0.001088 0.03% Amr::timeStep() 10 0.0001337 0.000194 0.0004506 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002795 0.0002958 0.0003199 0.01% Castro::clean_state() 62 0.0001435 0.0001637 0.0002113 0.01% Castro::do_advance_ctu() 10 0.0001273 0.0001628 0.0001844 0.01% StateDataPhysBCFunct::() 41 0.0001039 0.0001193 0.0001472 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001044 0.0001141 0.0001245 0.00% Castro::do_old_sources() 10 6.853e-05 9.47e-05 0.0001188 0.00% FabArray::ParallelCopy() 41 9.561e-05 0.0001021 0.000108 0.00% Castro::Castro() 1 4.747e-05 7.343e-05 0.0001025 0.00% Castro::construct_old_source() 50 4.392e-05 6.99e-05 9.69e-05 0.00% Castro::apply_source_to_state() 20 4.065e-05 5.969e-05 8.662e-05 0.00% FillPatchSingleLevel 41 6.766e-05 7.25e-05 7.96e-05 0.00% Amr::FinalizeInit() 1 3.275e-06 1.324e-05 7.575e-05 0.00% Castro::do_new_sources() 10 4.755e-05 5.918e-05 6.517e-05 0.00% Castro::subcycle_advance_ctu() 10 4.13e-05 4.882e-05 5.663e-05 0.00% Amr::defBaseLevel() 1 3.975e-05 4.714e-05 5.439e-05 0.00% Castro::advance() 10 3.744e-05 4.528e-05 5.24e-05 0.00% Castro::construct_old_gravity() 10 3.256e-05 3.703e-05 4.025e-05 0.00% Castro::construct_new_gravity() 10 2.883e-05 3.338e-05 3.752e-05 0.00% Castro::expand_state() 10 2.168e-05 2.538e-05 2.817e-05 0.00% Castro::check_for_nan() 20 2.258e-05 2.48e-05 2.684e-05 0.00% Castro::post_timestep() 10 1.368e-05 1.732e-05 2.394e-05 0.00% Castro::post_init() 1 1.345e-05 1.611e-05 1.847e-05 0.00% Castro::computeNewDt() 9 8.594e-06 9.664e-06 1.079e-05 0.00% Amr::InitializeInit() 1 2.604e-06 3.273e-06 5.597e-06 0.00% Castro::computeInitialDt() 2 3.086e-06 3.646e-06 4.151e-06 0.00% Amr::init() 1 1.906e-06 2.434e-06 2.948e-06 0.00% Amr::initialInit() 1 1.615e-06 1.898e-06 2.324e-06 0.00% Other 261 0.01612 0.01874 0.02101 0.62% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.383 3.384 3.385 100.00% Amr::coarseTimeStep() 10 3.198 3.198 3.198 94.49% Amr::timeStep() 10 3.185 3.186 3.188 94.19% Castro::advance() 10 3.169 3.17 3.17 93.65% Castro::subcycle_advance_ctu() 10 3.093 3.098 3.113 91.96% Castro::do_advance_ctu() 10 3.093 3.098 3.113 91.96% Castro::construct_ctu_hydro_source() 10 2.36 2.364 2.369 69.99% Gravity::make_radial_gravity() 21 0.2998 0.3061 0.3206 9.47% AmrLevel::FillPatch() 41 0.1913 0.2088 0.2237 6.61% Gravity::get_new_grav_vector() 11 0.2025 0.204 0.2061 6.09% FillPatchIterator::Initialize 41 0.1576 0.1765 0.2002 5.91% Castro::construct_old_gravity() 10 0.1764 0.1822 0.1942 5.74% Gravity::get_old_grav_vector() 10 0.1757 0.1816 0.1937 5.72% Castro::construct_new_gravity() 10 0.1797 0.1815 0.1831 5.41% Amr::init() 1 0.1731 0.1738 0.1744 5.15% Castro::initialize_do_advance() 10 0.1587 0.1616 0.1664 4.92% FillPatchIterator::FillFromLevel0() 41 0.1102 0.1336 0.1653 4.88% FillPatchSingleLevel 41 0.1101 0.1335 0.1652 4.88% Amr::initialInit() 1 0.1583 0.1595 0.1601 4.73% check_for_negative_density() 10 0.05958 0.1079 0.1556 4.60% FabArray::ParallelCopy() 41 0.07914 0.1025 0.135 3.99% Amr::InitializeInit() 1 0.05823 0.0935 0.1325 3.91% Amr::defBaseLevel() 1 0.05822 0.09349 0.1325 3.91% Castro::clean_state() 62 0.115 0.1191 0.1259 3.72% Castro::expand_state() 10 0.1045 0.1091 0.1168 3.45% Castro::do_old_sources() 10 0.1078 0.1117 0.1145 3.38% Castro::initData() 1 0.04083 0.07601 0.1143 3.38% Castro::estTimeStep() 21 0.02794 0.0664 0.1037 3.06% Amr::FinalizeInit() 1 0.02634 0.06597 0.1017 3.00% FabArray::ParallelCopy_finish() 41 0.03786 0.06142 0.09997 2.95% amrex::Copy() 193 0.06233 0.0785 0.08466 2.50% Castro::computeInitialDt() 2 0.002102 0.04177 0.07739 2.29% FabArray::setVal() 143 0.05275 0.06543 0.07704 2.28% Castro::initialize_advance() 10 0.05304 0.06788 0.07321 2.16% Castro::do_new_sources() 10 0.0603 0.06396 0.06808 2.01% Castro::computeTemp() 63 0.06386 0.0653 0.06638 1.96% Castro::normalize_species() 62 0.04585 0.04839 0.05413 1.60% Castro::reset_internal_energy(MultiFab) 63 0.0456 0.04683 0.04752 1.40% Castro::reset_internal_energy(Fab) 1008 0.04532 0.04653 0.04722 1.40% FabArray::ParallelCopy_nowait() 41 0.03497 0.04098 0.04364 1.29% StateDataPhysBCFunct::() 41 0.03005 0.03096 0.03272 0.97% Castro::construct_new_source() 50 0.02926 0.03059 0.03272 0.97% StateData::FillBoundary(geom) 41 0.02993 0.03084 0.03262 0.96% Gravity::interpolate_monopole_grav() 21 0.02678 0.0271 0.02766 0.82% Castro::construct_new_gravity_source() 10 0.0231 0.02435 0.02618 0.77% Castro::post_init() 1 0.02336 0.02361 0.02372 0.70% Amr::writePlotFile() 2 0.02181 0.02194 0.02239 0.66% Castro::apply_source_to_state() 20 0.01055 0.01424 0.02051 0.61% FabArray::Saxpy() 20 0.01051 0.01418 0.02043 0.60% Castro::finalize_do_advance() 10 0.01269 0.01718 0.02035 0.60% Castro::post_timestep() 10 0.01594 0.01649 0.01857 0.55% FabArray::setDomainBndry() 41 0.006989 0.01001 0.01359 0.40% Castro::construct_old_source() 50 0.006993 0.009802 0.01306 0.39% Castro::construct_old_gravity_source() 10 0.006949 0.009732 0.01297 0.38% Castro::check_for_nan() 20 0.01043 0.01117 0.01237 0.37% MultiFab::contains_nan() 20 0.01041 0.01115 0.01235 0.36% VisMF::Write(FabArray) 2 0.008472 0.00945 0.01198 0.35% Castro::Castro() 1 0.01041 0.01095 0.01183 0.35% Castro::computeNewDt() 9 0.008521 0.008532 0.008541 0.25% Castro::initMFs() 1 0.006392 0.006931 0.00843 0.25% Other 261 0.02614 0.03006 0.03372 1.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 30 B 33 B 38 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8661 KiB 8671 KiB 8675 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6763 KiB 6770 KiB 6775 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7133 KiB 7140 KiB 7143 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4568 KiB 4574 KiB 4597 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 213 KiB 230 KiB 247 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 14 KiB 16 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2805 KiB 2809 KiB 2810 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 225 KiB 230 KiB 241 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 36 KiB 45 KiB 60 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 76 KiB 77 KiB 78 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 66 KiB 68 KiB 73 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.06-22-g1d307c2c661a-dirty) finalized