Initializing AMReX (25.06-22-g1d307c2c661a-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.06-22-g1d307c2c661a-dirty) initialized Starting run at 05:13:52 UTC on 2025-09-24. Successfully read inputs file ... Castro git describe: 25.09.1-12-g7214316ff AMReX git describe: 25.06-22-g1d307c2c6-dirty Microphysics git describe: 25.09-6-g322a214a reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014361242 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.339878685 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.338502559 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.313280726 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.311739529 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.355713958 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.313282498 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.299306413 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.308412659 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.298780673 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.297545215 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007502916 seconds Ending run at 05:13:56 UTC on 2025-09-24. Run time = 3.371674814 Run time without initialization = 3.189230185 Average number of zones advanced per microsecond: 0.822 Average number of zones advanced per microsecond per rank: 0.103 TinyProfiler total time across processes [min...avg...max]: 3.3698 ... 3.3709 ... 3.3722 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1962 2.2278 2.2692 67.29% Gravity::make_radial_gravity() 21 0.2878 0.294 0.3053 9.05% check_for_negative_density() 10 0.04593 0.09813 0.1274 3.78% Castro::initData() 1 0.03809 0.07249 0.1188 3.52% Castro::estTimeStep() 21 0.02908 0.07397 0.1115 3.31% amrex::Copy() 193 0.06351 0.07913 0.09003 2.67% FabArray::ParallelCopy_finish() 41 0.04266 0.05331 0.08736 2.59% FabArray::setVal() 143 0.05416 0.06541 0.07021 2.08% Castro::normalize_species() 62 0.04569 0.04724 0.05226 1.55% Castro::reset_internal_energy(Fab) 1008 0.04395 0.0462 0.04842 1.44% FabArray::ParallelCopy_nowait() 41 0.03636 0.04116 0.04313 1.28% StateData::FillBoundary(geom) 41 0.0287 0.03265 0.03611 1.07% FillPatchIterator::Initialize 41 0.0285 0.0322 0.03493 1.04% Gravity::interpolate_monopole_grav() 21 0.02669 0.0269 0.02697 0.80% Castro::construct_new_gravity_source() 10 0.02271 0.02449 0.02632 0.78% Castro::computeTemp() 63 0.01783 0.01841 0.01916 0.57% Castro::initialize_do_advance() 10 0.01179 0.0163 0.0177 0.52% FabArray::Saxpy() 20 0.01083 0.01284 0.0137 0.41% Castro::initialize_advance() 10 0.005325 0.01067 0.01357 0.40% FabArray::setDomainBndry() 41 0.006943 0.01025 0.01272 0.38% MultiFab::contains_nan() 20 0.01022 0.01127 0.01255 0.37% VisMF::Write(FabArray) 2 0.00873 0.009575 0.01203 0.36% Amr::writePlotFile() 2 0.00734 0.00998 0.01188 0.35% Castro::construct_old_gravity_source() 10 0.00708 0.009699 0.01064 0.32% Castro::initMFs() 1 0.00642 0.006883 0.008157 0.24% Castro::enforce_min_density() 62 0.005764 0.006171 0.006697 0.20% Castro::construct_new_source() 50 0.005844 0.006153 0.006483 0.19% main() 1 0.003584 0.004172 0.004784 0.14% Gravity::get_new_grav_vector() 11 0.002934 0.003349 0.003768 0.11% Gravity::get_old_grav_vector() 10 0.001694 0.002025 0.002498 0.07% Amr::coarseTimeStep() 10 0.0013 0.001795 0.002493 0.07% Castro::finalize_do_advance() 10 0.0007214 0.001115 0.001188 0.04% AmrLevel::FillPatch() 41 0.0007474 0.0008925 0.001057 0.03% Amr::timeStep() 10 0.0001378 0.0001849 0.0004143 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002832 0.0003096 0.0003492 0.01% Castro::do_advance_ctu() 10 0.0001398 0.0001706 0.0002007 0.01% StateDataPhysBCFunct::() 41 0.0001006 0.0001248 0.0001727 0.01% Castro::clean_state() 62 0.000148 0.0001585 0.0001692 0.01% FillPatchIterator::FillFromLevel0() 41 0.000105 0.0001205 0.0001423 0.00% FabArray::ParallelCopy() 41 9.123e-05 0.0001037 0.0001174 0.00% Castro::do_old_sources() 10 7.582e-05 9.165e-05 0.0001048 0.00% FillPatchSingleLevel 41 7.008e-05 7.677e-05 8.994e-05 0.00% Castro::construct_old_source() 50 4.566e-05 7.083e-05 8.991e-05 0.00% Castro::Castro() 1 4.158e-05 6.607e-05 8.845e-05 0.00% Amr::FinalizeInit() 1 3.805e-06 1.477e-05 8.761e-05 0.00% Castro::do_new_sources() 10 5.537e-05 5.958e-05 6.419e-05 0.00% Castro::advance() 10 3.629e-05 4.574e-05 5.91e-05 0.00% Amr::defBaseLevel() 1 4.162e-05 4.829e-05 5.592e-05 0.00% Castro::apply_source_to_state() 20 4.368e-05 5.047e-05 5.444e-05 0.00% Castro::construct_old_gravity() 10 3.54e-05 4.009e-05 5.243e-05 0.00% Castro::subcycle_advance_ctu() 10 4.381e-05 4.683e-05 5.088e-05 0.00% Castro::construct_new_gravity() 10 3.251e-05 3.64e-05 4.713e-05 0.00% Castro::expand_state() 10 2.056e-05 2.559e-05 2.97e-05 0.00% Castro::check_for_nan() 20 2.41e-05 2.687e-05 2.835e-05 0.00% Castro::post_timestep() 10 1.35e-05 1.577e-05 1.911e-05 0.00% Castro::post_init() 1 1.528e-05 1.59e-05 1.669e-05 0.00% Castro::computeNewDt() 9 8.431e-06 9.735e-06 1.127e-05 0.00% Amr::init() 1 1.902e-06 3.33e-06 9.748e-06 0.00% Amr::InitializeInit() 1 2.477e-06 3.349e-06 6.204e-06 0.00% Castro::computeInitialDt() 2 2.899e-06 3.429e-06 4.059e-06 0.00% Amr::initialInit() 1 1.322e-06 1.743e-06 2.289e-06 0.00% Other 199 0.01013 0.01232 0.01465 0.43% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.37 3.371 3.372 100.00% Amr::coarseTimeStep() 10 3.177 3.177 3.177 94.21% Amr::timeStep() 10 3.165 3.166 3.166 93.89% Castro::advance() 10 3.149 3.149 3.15 93.40% Castro::subcycle_advance_ctu() 10 3.073 3.078 3.092 91.69% Castro::do_advance_ctu() 10 3.073 3.078 3.092 91.69% Castro::construct_ctu_hydro_source() 10 2.337 2.347 2.355 69.84% Gravity::make_radial_gravity() 21 0.3042 0.31 0.3182 9.44% AmrLevel::FillPatch() 41 0.1857 0.2031 0.215 6.38% Gravity::get_new_grav_vector() 11 0.2049 0.2063 0.2072 6.14% Castro::construct_old_gravity() 10 0.1795 0.1844 0.1921 5.70% Gravity::get_old_grav_vector() 10 0.1789 0.1837 0.1914 5.67% FillPatchIterator::Initialize 41 0.1568 0.1701 0.1904 5.65% Castro::construct_new_gravity() 10 0.1832 0.184 0.1843 5.47% Amr::init() 1 0.1813 0.1819 0.1825 5.41% Castro::initialize_do_advance() 10 0.1546 0.1623 0.1689 5.01% Amr::initialInit() 1 0.1663 0.1673 0.1679 4.98% FillPatchIterator::FillFromLevel0() 41 0.1186 0.1276 0.1549 4.59% FillPatchSingleLevel 41 0.1185 0.1275 0.1548 4.59% Amr::InitializeInit() 1 0.05963 0.09346 0.1404 4.16% Amr::defBaseLevel() 1 0.05963 0.09346 0.1404 4.16% check_for_negative_density() 10 0.04593 0.09813 0.1274 3.78% FabArray::ParallelCopy() 41 0.08597 0.09467 0.1239 3.68% Castro::initData() 1 0.04174 0.07635 0.1225 3.63% Castro::expand_state() 10 0.09956 0.109 0.1204 3.57% Castro::clean_state() 62 0.1159 0.1176 0.1197 3.55% Castro::estTimeStep() 21 0.02908 0.07397 0.1115 3.31% Castro::do_old_sources() 10 0.09654 0.1031 0.1102 3.27% Amr::FinalizeInit() 1 0.02594 0.07381 0.1082 3.21% amrex::Copy() 193 0.06351 0.07913 0.09003 2.67% FabArray::ParallelCopy_finish() 41 0.04266 0.05331 0.08736 2.59% Castro::computeInitialDt() 2 0.002134 0.04962 0.08392 2.49% Castro::initialize_advance() 10 0.05372 0.06832 0.07299 2.16% FabArray::setVal() 143 0.05416 0.06541 0.07021 2.08% Castro::do_new_sources() 10 0.06093 0.06395 0.06854 2.03% Castro::computeTemp() 63 0.0621 0.06492 0.06787 2.01% Castro::normalize_species() 62 0.04569 0.04724 0.05226 1.55% Castro::reset_internal_energy(MultiFab) 63 0.04427 0.04651 0.04871 1.44% Castro::reset_internal_energy(Fab) 1008 0.04395 0.0462 0.04842 1.44% FabArray::ParallelCopy_nowait() 41 0.03648 0.04126 0.04321 1.28% StateDataPhysBCFunct::() 41 0.02881 0.03277 0.03624 1.07% StateData::FillBoundary(geom) 41 0.0287 0.03265 0.03611 1.07% Castro::construct_new_source() 50 0.02895 0.03064 0.03252 0.96% Gravity::interpolate_monopole_grav() 21 0.02669 0.0269 0.02697 0.80% Castro::construct_new_gravity_source() 10 0.02271 0.02449 0.02632 0.78% Castro::post_init() 1 0.0234 0.02362 0.02382 0.71% Amr::writePlotFile() 2 0.02208 0.02219 0.02258 0.67% Castro::finalize_do_advance() 10 0.01234 0.01688 0.02017 0.60% Castro::post_timestep() 10 0.01547 0.016 0.0165 0.49% Castro::apply_source_to_state() 20 0.01087 0.0129 0.01375 0.41% FabArray::Saxpy() 20 0.01083 0.01284 0.0137 0.41% FabArray::setDomainBndry() 41 0.006943 0.01025 0.01272 0.38% Castro::check_for_nan() 20 0.01024 0.0113 0.01257 0.37% MultiFab::contains_nan() 20 0.01022 0.01127 0.01255 0.37% VisMF::Write(FabArray) 2 0.00873 0.009575 0.01203 0.36% Castro::Castro() 1 0.01032 0.01078 0.01161 0.34% Castro::construct_old_source() 50 0.007125 0.00977 0.01071 0.32% Castro::construct_old_gravity_source() 10 0.00708 0.009699 0.01064 0.32% Castro::computeNewDt() 9 0.008576 0.008597 0.008611 0.26% Castro::initMFs() 1 0.00642 0.006883 0.008157 0.24% Castro::enforce_min_density() 62 0.005764 0.006171 0.006697 0.20% Other 199 0.02018 0.02355 0.02744 0.81% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 33 B 35 B 43 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8659 KiB 8669 KiB 8673 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6742 KiB 6749 KiB 6754 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7130 KiB 7139 KiB 7143 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4553 KiB 4560 KiB 4583 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 204 KiB 225 KiB 242 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 14 KiB 16 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2798 KiB 2801 KiB 2803 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 230 KiB 234 KiB 240 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 38 KiB 42 KiB 57 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 78 KiB 78 KiB 78 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 68 KiB 70 KiB 72 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.06-22-g1d307c2c661a-dirty) finalized