Initializing AMReX (25.06-22-g1d307c2c661a-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.06-22-g1d307c2c661a-dirty) initialized Starting run at 05:17:38 UTC on 2025-09-25. Successfully read inputs file ... Castro git describe: 25.09.1-13-g7bad097cd AMReX git describe: 25.06-22-g1d307c2c6-dirty Microphysics git describe: 25.09-8-g4cb2d13f reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015673899 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.344443399 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.33901603 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.314225531 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.315605868 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.365401481 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.302443951 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.298485576 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.298235141 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.298667766 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.298061959 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007487987 seconds Ending run at 05:17:42 UTC on 2025-09-25. Run time = 3.393005959 Run time without initialization = 3.187422818 Average number of zones advanced per microsecond: 0.822 Average number of zones advanced per microsecond per rank: 0.103 TinyProfiler total time across processes [min...avg...max]: 3.3881 ... 3.3917 ... 3.3930 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2051 2.2328 2.2598 66.60% Gravity::make_radial_gravity() 21 0.2986 0.3122 0.3398 10.02% Castro::initData() 1 0.04817 0.07674 0.1271 3.75% Castro::estTimeStep() 21 0.02797 0.08205 0.1145 3.37% check_for_negative_density() 10 0.03985 0.06902 0.09806 2.89% FabArray::ParallelCopy_finish() 41 0.0498 0.06056 0.08852 2.61% amrex::Copy() 193 0.06757 0.07853 0.08753 2.58% FabArray::setVal() 143 0.05555 0.06691 0.07361 2.17% Castro::reset_internal_energy(Fab) 1008 0.04522 0.04812 0.05433 1.60% FabArray::ParallelCopy_nowait() 41 0.03512 0.04068 0.04797 1.41% Castro::normalize_species() 62 0.04463 0.04549 0.04674 1.38% StateData::FillBoundary(geom) 41 0.02802 0.03257 0.03806 1.12% FillPatchIterator::Initialize 41 0.02856 0.03216 0.03496 1.03% Gravity::interpolate_monopole_grav() 21 0.02658 0.02697 0.02761 0.81% Castro::construct_new_gravity_source() 10 0.0228 0.02391 0.02539 0.75% Castro::computeTemp() 63 0.01791 0.01921 0.02401 0.71% Castro::initialize_do_advance() 10 0.01156 0.01619 0.01745 0.51% MultiFab::contains_nan() 20 0.01048 0.01217 0.01508 0.44% VisMF::Write(FabArray) 2 0.00952 0.0103 0.01411 0.42% Castro::initialize_advance() 10 0.005365 0.01063 0.01357 0.40% FabArray::Saxpy() 20 0.0104 0.01199 0.01306 0.38% FabArray::setDomainBndry() 41 0.006852 0.01008 0.01271 0.37% Amr::writePlotFile() 2 0.00746 0.01053 0.01129 0.33% Castro::initMFs() 1 0.006512 0.007743 0.01078 0.32% Castro::construct_old_gravity_source() 10 0.006147 0.008616 0.009179 0.27% StateData::define() 4 0.005346 0.006346 0.008333 0.25% Castro::construct_new_source() 50 0.005756 0.006071 0.006537 0.19% main() 1 0.003963 0.00423 0.004533 0.13% Gravity::get_old_grav_vector() 10 0.001515 0.002371 0.004395 0.13% Gravity::get_new_grav_vector() 11 0.002805 0.003495 0.004001 0.12% Amr::coarseTimeStep() 10 0.001711 0.002636 0.003289 0.10% Castro::finalize_do_advance() 10 0.0006639 0.001191 0.001663 0.05% AmrLevel::FillPatch() 41 0.000714 0.0009786 0.0011 0.03% Amr::timeStep() 10 0.0001371 0.0001886 0.0003929 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002771 0.0003171 0.0003702 0.01% Castro::do_advance_ctu() 10 0.0001351 0.0001727 0.0002053 0.01% Castro::clean_state() 62 0.0001397 0.0001579 0.0001831 0.01% Amr::defBaseLevel() 1 4.844e-05 6.787e-05 0.0001678 0.00% StateDataPhysBCFunct::() 41 0.0001019 0.0001162 0.0001317 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001014 0.0001168 0.0001295 0.00% FabArray::ParallelCopy() 41 9.421e-05 0.0001024 0.0001214 0.00% Castro::do_old_sources() 10 7.456e-05 9.344e-05 0.0001122 0.00% Amr::FinalizeInit() 1 3.435e-06 1.536e-05 8.439e-05 0.00% FillPatchSingleLevel 41 6.902e-05 7.325e-05 7.784e-05 0.00% Castro::Castro() 1 6.016e-05 6.79e-05 7.764e-05 0.00% Castro::construct_old_source() 50 4.817e-05 6.4e-05 7.173e-05 0.00% Castro::do_new_sources() 10 5.376e-05 5.969e-05 6.607e-05 0.00% Castro::apply_source_to_state() 20 4.059e-05 5.35e-05 5.932e-05 0.00% Castro::subcycle_advance_ctu() 10 4.072e-05 4.887e-05 5.771e-05 0.00% Castro::advance() 10 4.029e-05 4.698e-05 5.581e-05 0.00% Castro::construct_old_gravity() 10 3.424e-05 4.434e-05 5.248e-05 0.00% Castro::construct_new_gravity() 10 3.057e-05 3.74e-05 5.027e-05 0.00% Castro::check_for_nan() 20 2.52e-05 2.823e-05 3.615e-05 0.00% Castro::expand_state() 10 2.182e-05 2.537e-05 3.152e-05 0.00% AmrLevel::AmrLevel(dm) 1 9.838e-06 1.493e-05 2.184e-05 0.00% Castro::post_timestep() 10 1.412e-05 1.614e-05 1.8e-05 0.00% Castro::post_init() 1 1.367e-05 1.498e-05 1.704e-05 0.00% Castro::computeNewDt() 9 7.991e-06 9.409e-06 1.094e-05 0.00% Amr::InitializeInit() 1 3.209e-06 3.734e-06 6.348e-06 0.00% Amr::init() 1 2.317e-06 2.973e-06 5.623e-06 0.00% Castro::computeInitialDt() 2 2.987e-06 3.609e-06 4.765e-06 0.00% Amr::initialInit() 1 1.596e-06 1.826e-06 2.052e-06 0.00% Other 256 0.009725 0.01624 0.01973 0.58% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.388 3.392 3.393 100.00% Amr::coarseTimeStep() 10 3.175 3.175 3.175 93.59% Amr::timeStep() 10 3.162 3.163 3.164 93.25% Castro::advance() 10 3.147 3.147 3.147 92.76% Castro::subcycle_advance_ctu() 10 3.072 3.075 3.091 91.09% Castro::do_advance_ctu() 10 3.072 3.075 3.091 91.09% Castro::construct_ctu_hydro_source() 10 2.321 2.323 2.324 68.51% Gravity::make_radial_gravity() 21 0.3149 0.3279 0.3531 10.41% Castro::construct_old_gravity() 10 0.1902 0.2013 0.2237 6.59% Gravity::get_old_grav_vector() 10 0.1892 0.2005 0.2231 6.58% AmrLevel::FillPatch() 41 0.1872 0.2077 0.2191 6.46% Gravity::get_new_grav_vector() 11 0.2087 0.21 0.2109 6.21% Amr::init() 1 0.2005 0.2042 0.2056 6.06% Amr::initialInit() 1 0.1846 0.1884 0.19 5.60% FillPatchIterator::Initialize 41 0.1568 0.1766 0.1876 5.53% Castro::construct_new_gravity() 10 0.1833 0.1838 0.1848 5.45% Castro::initialize_do_advance() 10 0.1636 0.1741 0.1816 5.35% Amr::InitializeInit() 1 0.07422 0.1022 0.1545 4.55% Amr::defBaseLevel() 1 0.07422 0.1022 0.1545 4.55% FillPatchIterator::FillFromLevel0() 41 0.1194 0.1343 0.1522 4.48% FillPatchSingleLevel 41 0.1193 0.1342 0.1521 4.48% Castro::initData() 1 0.05176 0.08056 0.1312 3.87% Castro::clean_state() 62 0.1136 0.1186 0.1272 3.75% Castro::expand_state() 10 0.1098 0.117 0.1247 3.68% FabArray::ParallelCopy() 41 0.08975 0.1014 0.1239 3.65% Castro::estTimeStep() 21 0.02797 0.08205 0.1145 3.37% Amr::FinalizeInit() 1 0.03055 0.08621 0.1144 3.37% Castro::do_old_sources() 10 0.08936 0.09688 0.102 3.01% check_for_negative_density() 10 0.03985 0.06902 0.09806 2.89% FabArray::ParallelCopy_finish() 41 0.0498 0.06056 0.08852 2.61% amrex::Copy() 193 0.06757 0.07853 0.08753 2.58% Castro::computeInitialDt() 2 0.002465 0.05849 0.08668 2.55% Castro::computeTemp() 63 0.06349 0.06765 0.07468 2.20% FabArray::setVal() 143 0.05555 0.06691 0.07361 2.17% Castro::initialize_advance() 10 0.05244 0.06835 0.07256 2.14% Castro::do_new_sources() 10 0.05877 0.06281 0.06725 1.98% Castro::reset_internal_energy(MultiFab) 63 0.04552 0.04844 0.0547 1.61% Castro::reset_internal_energy(Fab) 1008 0.04522 0.04812 0.05433 1.60% FabArray::ParallelCopy_nowait() 41 0.03524 0.04079 0.04805 1.42% Castro::normalize_species() 62 0.04463 0.04549 0.04674 1.38% StateDataPhysBCFunct::() 41 0.02812 0.03269 0.03818 1.13% StateData::FillBoundary(geom) 41 0.02802 0.03257 0.03806 1.12% Castro::construct_new_source() 50 0.02856 0.02998 0.03193 0.94% Gravity::interpolate_monopole_grav() 21 0.02658 0.02697 0.02761 0.81% Castro::post_init() 1 0.02717 0.02731 0.0276 0.81% Castro::construct_new_gravity_source() 10 0.0228 0.02391 0.02539 0.75% Amr::writePlotFile() 2 0.02303 0.02339 0.02359 0.70% Castro::finalize_do_advance() 10 0.01162 0.01619 0.01987 0.59% Castro::post_timestep() 10 0.01543 0.0159 0.017 0.50% Castro::check_for_nan() 20 0.0105 0.0122 0.01511 0.45% MultiFab::contains_nan() 20 0.01048 0.01217 0.01508 0.44% Castro::Castro() 1 0.009981 0.01149 0.01491 0.44% VisMF::Write(FabArray) 2 0.00952 0.0103 0.01411 0.42% Castro::apply_source_to_state() 20 0.01044 0.01205 0.01312 0.39% FabArray::Saxpy() 20 0.0104 0.01199 0.01306 0.38% FabArray::setDomainBndry() 41 0.006852 0.01008 0.01271 0.37% Castro::initMFs() 1 0.006512 0.007743 0.01078 0.32% Castro::construct_old_source() 50 0.006195 0.00868 0.009248 0.27% Castro::construct_old_gravity_source() 10 0.006147 0.008616 0.009179 0.27% Castro::computeNewDt() 9 0.008563 0.008575 0.008596 0.25% AmrLevel::AmrLevel(dm) 1 0.00536 0.00636 0.008353 0.25% StateData::define() 4 0.005346 0.006346 0.008333 0.25% Other 256 0.01432 0.02476 0.03019 0.89% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 37 B 42 B 62 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8649 KiB 8659 KiB 8661 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6700 KiB 6705 KiB 6713 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7124 KiB 7133 KiB 7141 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4522 KiB 4529 KiB 4547 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 211 KiB 232 KiB 246 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 16 KiB 17 KiB 21 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2779 KiB 2782 KiB 2786 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 236 KiB 246 KiB 265 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 42 KiB 46 KiB 57 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2024 KiB 2027 KiB 2028 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 79 KiB 79 KiB 79 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 71 KiB 75 KiB 84 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.06-22-g1d307c2c661a-dirty) finalized