Initializing AMReX (25.06-22-g1d307c2c661a-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.06-22-g1d307c2c661a-dirty) initialized Starting run at 05:17:45 UTC on 2025-09-26. Successfully read inputs file ... Castro git describe: 25.09.1-13-g7bad097cd AMReX git describe: 25.06-22-g1d307c2c6-dirty Microphysics git describe: 25.09-8-g4cb2d13f reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014265596 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.338261469 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.32933925 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.318493189 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.319036103 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.357499476 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.306316446 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.295891353 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.296395005 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.29570827 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.295048009 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007464101 seconds Ending run at 05:17:49 UTC on 2025-09-26. Run time = 3.332292016 Run time without initialization = 3.164317225 Average number of zones advanced per microsecond: 0.828 Average number of zones advanced per microsecond per rank: 0.104 TinyProfiler total time across processes [min...avg...max]: 3.3312 ... 3.3320 ... 3.3324 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2073 2.2297 2.2711 68.15% Gravity::make_radial_gravity() 21 0.2857 0.2933 0.3075 9.23% Castro::initData() 1 0.03703 0.07116 0.1027 3.08% Castro::estTimeStep() 21 0.02481 0.06032 0.09932 2.98% check_for_negative_density() 10 0.02587 0.07401 0.09691 2.91% amrex::Copy() 193 0.06514 0.08107 0.09119 2.74% FabArray::ParallelCopy_finish() 41 0.03622 0.04891 0.08691 2.61% FabArray::setVal() 143 0.05338 0.06587 0.07196 2.16% Castro::normalize_species() 62 0.04579 0.04729 0.04945 1.48% Castro::reset_internal_energy(Fab) 1008 0.04433 0.04581 0.04857 1.46% FabArray::ParallelCopy_nowait() 41 0.03641 0.04193 0.04394 1.32% StateData::FillBoundary(geom) 41 0.02792 0.03193 0.03558 1.07% FillPatchIterator::Initialize 41 0.02741 0.0324 0.03473 1.04% Gravity::interpolate_monopole_grav() 21 0.02646 0.02671 0.0272 0.82% Castro::construct_new_gravity_source() 10 0.023 0.02449 0.02644 0.79% Castro::computeTemp() 63 0.01765 0.01832 0.01906 0.57% Castro::initialize_do_advance() 10 0.01184 0.01679 0.01797 0.54% FabArray::Saxpy() 20 0.01072 0.0126 0.01363 0.41% FabArray::setDomainBndry() 41 0.006576 0.01088 0.01339 0.40% Castro::initialize_advance() 10 0.00538 0.01066 0.01321 0.40% Amr::writePlotFile() 2 0.007468 0.009968 0.01201 0.36% MultiFab::contains_nan() 20 0.01028 0.01103 0.01187 0.36% VisMF::Write(FabArray) 2 0.008549 0.00944 0.01175 0.35% Castro::construct_old_gravity_source() 10 0.007172 0.009515 0.01022 0.31% Castro::initMFs() 1 0.006577 0.006936 0.008645 0.26% Castro::enforce_min_density() 62 0.005863 0.006205 0.006678 0.20% Castro::construct_new_source() 50 0.005879 0.006078 0.006318 0.19% main() 1 0.003783 0.003986 0.004276 0.13% Gravity::get_new_grav_vector() 11 0.002997 0.003492 0.0039 0.12% Gravity::get_old_grav_vector() 10 0.0017 0.002185 0.002692 0.08% Amr::coarseTimeStep() 10 0.001206 0.001868 0.002569 0.08% Castro::finalize_do_advance() 10 0.0006252 0.001104 0.001219 0.04% AmrLevel::FillPatch() 41 0.0007769 0.0009901 0.001069 0.03% Amr::timeStep() 10 0.0001498 0.0001911 0.0004034 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002881 0.0003099 0.0003281 0.01% Castro::do_advance_ctu() 10 0.0001558 0.0001747 0.0002111 0.01% Castro::clean_state() 62 0.0001465 0.0001602 0.0001762 0.01% StateDataPhysBCFunct::() 41 0.0001051 0.0001236 0.0001532 0.00% FillPatchIterator::FillFromLevel0() 41 0.000107 0.000114 0.0001201 0.00% Castro::do_old_sources() 10 8.998e-05 0.0001013 0.0001179 0.00% FabArray::ParallelCopy() 41 9.215e-05 0.0001026 0.0001133 0.00% Castro::Castro() 1 5.09e-05 7.861e-05 9.537e-05 0.00% Castro::construct_old_source() 50 5.122e-05 6.945e-05 9.483e-05 0.00% Amr::FinalizeInit() 1 3.844e-06 1.56e-05 8.436e-05 0.00% FillPatchSingleLevel 41 7.279e-05 7.523e-05 7.713e-05 0.00% Castro::do_new_sources() 10 4.854e-05 6.091e-05 7.108e-05 0.00% Amr::defBaseLevel() 1 3.837e-05 4.851e-05 6.902e-05 0.00% Castro::construct_old_gravity() 10 3.838e-05 4.402e-05 6.232e-05 0.00% Castro::apply_source_to_state() 20 4.341e-05 5.237e-05 5.545e-05 0.00% Castro::subcycle_advance_ctu() 10 4.358e-05 4.781e-05 5.42e-05 0.00% Castro::advance() 10 3.585e-05 4.555e-05 5.033e-05 0.00% Castro::construct_new_gravity() 10 3.287e-05 3.843e-05 4.506e-05 0.00% Castro::expand_state() 10 2.446e-05 2.84e-05 3.392e-05 0.00% Castro::check_for_nan() 20 2.518e-05 2.68e-05 2.945e-05 0.00% Castro::post_init() 1 1.428e-05 1.684e-05 2.116e-05 0.00% Castro::post_timestep() 10 1.248e-05 1.634e-05 1.968e-05 0.00% Castro::computeNewDt() 9 8.737e-06 9.688e-06 1.058e-05 0.00% Amr::init() 1 1.705e-06 2.944e-06 7.266e-06 0.00% Amr::InitializeInit() 1 2.603e-06 3.565e-06 5.815e-06 0.00% Castro::computeInitialDt() 2 3.143e-06 3.467e-06 3.918e-06 0.00% Amr::initialInit() 1 1.584e-06 1.914e-06 2.205e-06 0.00% Other 199 0.01031 0.01312 0.01505 0.45% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.331 3.332 3.332 100.00% Amr::coarseTimeStep() 10 3.153 3.153 3.153 94.61% Amr::timeStep() 10 3.14 3.141 3.141 94.27% Castro::advance() 10 3.124 3.124 3.125 93.77% Castro::subcycle_advance_ctu() 10 3.049 3.053 3.067 92.03% Castro::do_advance_ctu() 10 3.049 3.053 3.067 92.03% Castro::construct_ctu_hydro_source() 10 2.319 2.325 2.331 69.95% Gravity::make_radial_gravity() 21 0.3037 0.3105 0.3217 9.65% AmrLevel::FillPatch() 41 0.1835 0.1995 0.2105 6.32% Gravity::get_new_grav_vector() 11 0.2071 0.2087 0.2098 6.30% Castro::construct_old_gravity() 10 0.1781 0.1835 0.193 5.79% Gravity::get_old_grav_vector() 10 0.1774 0.1828 0.1923 5.77% Castro::construct_new_gravity() 10 0.1849 0.1858 0.1866 5.60% FillPatchIterator::Initialize 41 0.155 0.1666 0.1858 5.57% Castro::initialize_do_advance() 10 0.1544 0.1647 0.1685 5.06% Amr::init() 1 0.1662 0.1675 0.1678 5.04% Amr::initialInit() 1 0.1513 0.153 0.1534 4.60% FillPatchIterator::FillFromLevel0() 41 0.1127 0.1233 0.1518 4.55% FillPatchSingleLevel 41 0.1126 0.1232 0.1517 4.55% Amr::InitializeInit() 1 0.05938 0.09354 0.1247 3.74% Amr::defBaseLevel() 1 0.05938 0.09353 0.1247 3.74% FabArray::ParallelCopy() 41 0.07961 0.09105 0.1235 3.71% Castro::expand_state() 10 0.1008 0.1117 0.1204 3.61% Castro::clean_state() 62 0.1154 0.1172 0.1194 3.58% Castro::initData() 1 0.04106 0.0752 0.1062 3.19% Castro::do_old_sources() 10 0.09183 0.09581 0.1002 3.01% Castro::estTimeStep() 21 0.02481 0.06032 0.09932 2.98% check_for_negative_density() 10 0.02587 0.07401 0.09691 2.91% Amr::FinalizeInit() 1 0.02663 0.05949 0.09389 2.82% amrex::Copy() 193 0.06514 0.08107 0.09119 2.74% FabArray::ParallelCopy_finish() 41 0.03622 0.04891 0.08691 2.61% Castro::initialize_advance() 10 0.05386 0.06819 0.07216 2.17% FabArray::setVal() 143 0.05338 0.06587 0.07196 2.16% Castro::computeInitialDt() 2 0.00277 0.0352 0.06957 2.09% Castro::do_new_sources() 10 0.06067 0.06413 0.06904 2.07% Castro::computeTemp() 63 0.06231 0.06444 0.06793 2.04% Castro::normalize_species() 62 0.04579 0.04729 0.04945 1.48% Castro::reset_internal_energy(MultiFab) 63 0.04466 0.04612 0.04887 1.47% Castro::reset_internal_energy(Fab) 1008 0.04433 0.04581 0.04857 1.46% FabArray::ParallelCopy_nowait() 41 0.03654 0.04204 0.04404 1.32% StateDataPhysBCFunct::() 41 0.02805 0.03206 0.03573 1.07% StateData::FillBoundary(geom) 41 0.02792 0.03193 0.03558 1.07% Castro::construct_new_source() 50 0.02911 0.03057 0.03257 0.98% Gravity::interpolate_monopole_grav() 21 0.02646 0.02671 0.0272 0.82% Castro::construct_new_gravity_source() 10 0.023 0.02449 0.02644 0.79% Castro::post_init() 1 0.02377 0.02413 0.02432 0.73% Castro::finalize_do_advance() 10 0.01174 0.01778 0.02254 0.68% Amr::writePlotFile() 2 0.02197 0.02206 0.02249 0.68% Castro::post_timestep() 10 0.01532 0.01606 0.01676 0.50% Castro::apply_source_to_state() 20 0.01076 0.01265 0.01369 0.41% FabArray::Saxpy() 20 0.01072 0.0126 0.01363 0.41% FabArray::setDomainBndry() 41 0.006576 0.01088 0.01339 0.40% Castro::Castro() 1 0.01106 0.01136 0.01209 0.36% Castro::check_for_nan() 20 0.0103 0.01105 0.01189 0.36% MultiFab::contains_nan() 20 0.01028 0.01103 0.01187 0.36% VisMF::Write(FabArray) 2 0.008549 0.00944 0.01175 0.35% Castro::construct_old_source() 50 0.007223 0.009584 0.01029 0.31% Castro::construct_old_gravity_source() 10 0.007172 0.009515 0.01022 0.31% Castro::initMFs() 1 0.006577 0.006936 0.008645 0.26% Castro::computeNewDt() 9 0.008441 0.00846 0.00848 0.25% Castro::enforce_min_density() 62 0.005863 0.006205 0.006678 0.20% Other 199 0.02055 0.02505 0.0284 0.85% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 32 B 37 B 44 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 15 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8659 KiB 8668 KiB 8670 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6769 KiB 6775 KiB 6781 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7131 KiB 7139 KiB 7141 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4570 KiB 4577 KiB 4600 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 206 KiB 226 KiB 241 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 14 KiB 16 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2809 KiB 2812 KiB 2813 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 232 KiB 237 KiB 246 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 36 KiB 41 KiB 59 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2029 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 79 KiB 80 KiB 80 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 68 KiB 70 KiB 74 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.06-22-g1d307c2c661a-dirty) finalized