Initializing AMReX (25.06-22-g1d307c2c661a-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.06-22-g1d307c2c661a-dirty) initialized Starting run at 05:20:24 UTC on 2025-09-29. Successfully read inputs file ... Castro git describe: 25.09.1-13-g7bad097cd AMReX git describe: 25.06-22-g1d307c2c6-dirty Microphysics git describe: 25.09-9-g4db027ae reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015048247 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.344260411 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.360095811 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.347162057 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.342810559 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.369660544 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.298547009 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.296668826 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.29718072 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.296829284 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.299102778 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007608786 seconds Ending run at 05:20:27 UTC on 2025-09-29. Run time = 3.432105364 Run time without initialization = 3.265728681 Average number of zones advanced per microsecond: 0.803 Average number of zones advanced per microsecond per rank: 0.100 TinyProfiler total time across processes [min...avg...max]: 3.4300 ... 3.4311 ... 3.4321 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1102 2.2250 2.2698 66.13% Gravity::make_radial_gravity() 21 0.2931 0.2998 0.313 9.12% check_for_negative_density() 10 0.07293 0.1212 0.2396 6.98% Castro::initData() 1 0.03736 0.07039 0.1016 2.96% Castro::estTimeStep() 21 0.02846 0.06207 0.09748 2.84% amrex::Copy() 193 0.07998 0.08473 0.09681 2.82% FabArray::setVal() 143 0.06688 0.07484 0.08725 2.54% FabArray::ParallelCopy_finish() 41 0.04705 0.07005 0.08354 2.43% Castro::normalize_species() 62 0.04487 0.04668 0.05154 1.50% Castro::reset_internal_energy(Fab) 1008 0.04351 0.0465 0.04877 1.42% FabArray::ParallelCopy_nowait() 41 0.03879 0.04227 0.04715 1.37% FillPatchIterator::Initialize 41 0.02974 0.03513 0.03915 1.14% StateData::FillBoundary(geom) 41 0.02887 0.03185 0.03453 1.01% Gravity::interpolate_monopole_grav() 21 0.02662 0.02688 0.0271 0.79% Castro::construct_new_gravity_source() 10 0.02301 0.02424 0.02568 0.75% Castro::initialize_do_advance() 10 0.0147 0.01901 0.02321 0.68% Castro::computeTemp() 63 0.01756 0.01836 0.01895 0.55% MultiFab::contains_nan() 20 0.01075 0.01188 0.01511 0.44% Amr::coarseTimeStep() 10 0.001779 0.008797 0.01476 0.43% Castro::initialize_advance() 10 0.009813 0.01171 0.01386 0.40% FabArray::Saxpy() 20 0.01199 0.01255 0.01342 0.39% FabArray::setDomainBndry() 41 0.007668 0.01071 0.01301 0.38% VisMF::Write(FabArray) 2 0.009264 0.00985 0.01241 0.36% Amr::writePlotFile() 2 0.007493 0.01012 0.01069 0.31% Castro::construct_old_gravity_source() 10 0.009084 0.009502 0.009839 0.29% Castro::initMFs() 1 0.006512 0.006737 0.007435 0.22% Castro::construct_new_source() 50 0.005762 0.00614 0.006448 0.19% main() 1 0.003768 0.004631 0.005197 0.15% Gravity::get_new_grav_vector() 11 0.003169 0.00364 0.003928 0.11% Gravity::get_old_grav_vector() 10 0.001541 0.002078 0.002596 0.08% Castro::finalize_do_advance() 10 0.001307 0.001496 0.002066 0.06% AmrLevel::FillPatch() 41 0.00101 0.00119 0.001357 0.04% Amr::timeStep() 10 0.0001544 0.0001961 0.0003976 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002773 0.0003016 0.0003277 0.01% Castro::finalize_advance() 10 0.0001042 0.0001353 0.0002807 0.01% Castro::do_advance_ctu() 10 0.000133 0.0001758 0.0002099 0.01% Castro::clean_state() 62 0.0001374 0.000159 0.0001922 0.01% StateDataPhysBCFunct::() 41 0.0001052 0.0001216 0.0001374 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001019 0.0001172 0.0001356 0.00% Castro::Castro() 1 4.617e-05 9.223e-05 0.0001174 0.00% FabArray::ParallelCopy() 41 8.734e-05 0.0001027 0.0001075 0.00% Castro::do_old_sources() 10 7.622e-05 9.542e-05 0.0001035 0.00% Castro::construct_old_source() 50 6.071e-05 7.578e-05 9.206e-05 0.00% FillPatchSingleLevel 41 7.231e-05 7.96e-05 8.897e-05 0.00% Castro::do_new_sources() 10 5.011e-05 6.341e-05 7.727e-05 0.00% Amr::FinalizeInit() 1 3.811e-06 1.393e-05 7.682e-05 0.00% Castro::apply_source_to_state() 20 4.417e-05 5.349e-05 5.985e-05 0.00% Castro::subcycle_advance_ctu() 10 4.164e-05 4.989e-05 5.896e-05 0.00% Castro::construct_old_gravity() 10 3.919e-05 4.363e-05 5.592e-05 0.00% Castro::advance() 10 3.739e-05 4.541e-05 5.144e-05 0.00% Amr::defBaseLevel() 1 4.033e-05 4.369e-05 5.058e-05 0.00% Castro::construct_new_gravity() 10 3.368e-05 3.851e-05 4.266e-05 0.00% Castro::expand_state() 10 2.001e-05 2.462e-05 3.458e-05 0.00% Castro::check_for_nan() 20 2.446e-05 2.635e-05 3.152e-05 0.00% Castro::post_timestep() 10 1.397e-05 1.936e-05 3.014e-05 0.00% Castro::computeNewDt() 9 9.179e-06 1.254e-05 2.853e-05 0.00% Castro::post_init() 1 1.542e-05 1.819e-05 2.424e-05 0.00% Amr::InitializeInit() 1 2.698e-06 3.533e-06 6.029e-06 0.00% Castro::computeInitialDt() 2 3.132e-06 3.757e-06 4.398e-06 0.00% Amr::init() 1 2.029e-06 2.737e-06 3.723e-06 0.00% Amr::initialInit() 1 1.44e-06 2.141e-06 3.327e-06 0.00% Other 251 0.01615 0.01897 0.02135 0.62% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.43 3.431 3.432 100.00% Amr::coarseTimeStep() 10 3.253 3.253 3.253 94.78% Amr::timeStep() 10 3.227 3.233 3.24 94.41% Castro::advance() 10 3.212 3.215 3.22 93.83% Castro::subcycle_advance_ctu() 10 3.125 3.136 3.145 91.65% Castro::do_advance_ctu() 10 3.125 3.136 3.145 91.65% Castro::construct_ctu_hydro_source() 10 2.364 2.367 2.371 69.09% Gravity::make_radial_gravity() 21 0.3086 0.3171 0.3286 9.58% AmrLevel::FillPatch() 41 0.2006 0.2247 0.2456 7.16% check_for_negative_density() 10 0.07293 0.1212 0.2396 6.98% Gravity::get_new_grav_vector() 11 0.2135 0.2146 0.2162 6.30% FillPatchIterator::Initialize 41 0.1713 0.1905 0.2093 6.10% Castro::construct_old_gravity() 10 0.1843 0.1922 0.2037 5.93% Gravity::get_old_grav_vector() 10 0.1832 0.1913 0.2025 5.90% Castro::initialize_do_advance() 10 0.1724 0.1868 0.1977 5.76% Castro::construct_new_gravity() 10 0.1905 0.1912 0.1926 5.61% Amr::init() 1 0.1648 0.1656 0.1661 4.84% FillPatchIterator::FillFromLevel0() 41 0.1222 0.1447 0.1617 4.71% FillPatchSingleLevel 41 0.1221 0.1446 0.1616 4.71% Amr::initialInit() 1 0.1496 0.1503 0.1508 4.39% Castro::expand_state() 10 0.114 0.1303 0.1435 4.18% FabArray::ParallelCopy() 41 0.0902 0.1125 0.1269 3.70% Amr::InitializeInit() 1 0.05923 0.09211 0.1237 3.60% Amr::defBaseLevel() 1 0.05923 0.09211 0.1237 3.60% Castro::clean_state() 62 0.1115 0.1174 0.1234 3.59% Castro::initData() 1 0.04057 0.07438 0.1058 3.08% Castro::do_old_sources() 10 0.09082 0.09721 0.1023 2.98% Castro::estTimeStep() 21 0.02846 0.06207 0.09748 2.84% amrex::Copy() 193 0.07998 0.08473 0.09681 2.82% Amr::FinalizeInit() 1 0.0271 0.05818 0.0908 2.65% FabArray::setVal() 143 0.06688 0.07484 0.08725 2.54% Castro::initialize_advance() 10 0.06809 0.07432 0.08393 2.45% FabArray::ParallelCopy_finish() 41 0.04705 0.07005 0.08354 2.43% Castro::computeTemp() 63 0.06135 0.06516 0.06803 1.98% Castro::do_new_sources() 10 0.06093 0.06448 0.06783 1.98% Castro::computeInitialDt() 2 0.002184 0.03336 0.06603 1.92% Castro::normalize_species() 62 0.04487 0.04668 0.05154 1.50% Castro::reset_internal_energy(MultiFab) 63 0.04379 0.0468 0.04908 1.43% Castro::reset_internal_energy(Fab) 1008 0.04351 0.0465 0.04877 1.42% FabArray::ParallelCopy_nowait() 41 0.0389 0.04237 0.04724 1.38% StateDataPhysBCFunct::() 41 0.02898 0.03197 0.03465 1.01% StateData::FillBoundary(geom) 41 0.02887 0.03185 0.03453 1.01% Castro::construct_new_source() 50 0.02918 0.03037 0.03213 0.94% Castro::finalize_do_advance() 10 0.01489 0.0204 0.02978 0.87% Gravity::interpolate_monopole_grav() 21 0.02662 0.02688 0.0271 0.79% Castro::construct_new_gravity_source() 10 0.02301 0.02424 0.02568 0.75% Castro::post_timestep() 10 0.01516 0.01798 0.02488 0.72% Castro::post_init() 1 0.02421 0.02436 0.02443 0.71% Amr::writePlotFile() 2 0.02287 0.02296 0.02306 0.67% Castro::check_for_nan() 20 0.01078 0.01191 0.01514 0.44% MultiFab::contains_nan() 20 0.01075 0.01188 0.01511 0.44% Castro::apply_source_to_state() 20 0.01203 0.01261 0.01347 0.39% FabArray::Saxpy() 20 0.01199 0.01255 0.01342 0.39% FabArray::setDomainBndry() 41 0.007668 0.01071 0.01301 0.38% VisMF::Write(FabArray) 2 0.009264 0.00985 0.01241 0.36% Castro::Castro() 1 0.01097 0.01119 0.01183 0.34% Castro::finalize_advance() 10 0.002992 0.004401 0.01111 0.32% Castro::construct_old_source() 50 0.009144 0.009577 0.009912 0.29% Castro::computeNewDt() 9 0.009737 0.009831 0.00986 0.29% Castro::construct_old_gravity_source() 10 0.009084 0.009502 0.009839 0.29% Castro::initMFs() 1 0.006512 0.006737 0.007435 0.22% Other 251 0.02322 0.02718 0.03069 0.89% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 32 B 42 B 64 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 13 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8661 KiB 8669 KiB 8672 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6784 KiB 6789 KiB 6791 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7132 KiB 7139 KiB 7141 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4550 KiB 4565 KiB 4578 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 218 KiB 249 KiB 274 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 16 KiB 17 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2807 KiB 2810 KiB 2815 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 229 KiB 235 KiB 243 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 39 KiB 51 KiB 59 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2029 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 79 KiB 80 KiB 80 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 68 KiB 71 KiB 75 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.06-22-g1d307c2c661a-dirty) finalized