Initializing AMReX (25.06-22-g1d307c2c661a-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.06-22-g1d307c2c661a-dirty) initialized Starting run at 05:17:35 UTC on 2025-09-30. Successfully read inputs file ... Castro git describe: 25.09.1-13-g7bad097cd AMReX git describe: 25.06-22-g1d307c2c6-dirty Microphysics git describe: 25.09-9-g4db027ae reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014482718 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.33518146 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.335366777 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.317826022 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.322496217 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.361987725 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.305083744 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.297213133 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.296955475 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.298432068 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.297676984 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007626606 seconds Ending run at 05:17:39 UTC on 2025-09-30. Run time = 3.35313511 Run time without initialization = 3.181482738 Average number of zones advanced per microsecond: 0.824 Average number of zones advanced per microsecond per rank: 0.103 TinyProfiler total time across processes [min...avg...max]: 3.3515 ... 3.3526 ... 3.3532 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2146 2.2402 2.2887 68.25% Gravity::make_radial_gravity() 21 0.2898 0.2993 0.3126 9.32% Castro::initData() 1 0.039 0.07177 0.1064 3.17% check_for_negative_density() 10 0.02206 0.07521 0.1028 3.06% Castro::estTimeStep() 21 0.02643 0.06084 0.09016 2.69% amrex::Copy() 193 0.06583 0.08141 0.09001 2.68% FabArray::ParallelCopy_finish() 41 0.03684 0.04906 0.08876 2.65% FabArray::setVal() 143 0.05348 0.06551 0.07117 2.12% Castro::normalize_species() 62 0.04602 0.0469 0.04842 1.44% Castro::reset_internal_energy(Fab) 1008 0.04466 0.04598 0.04768 1.42% FabArray::ParallelCopy_nowait() 41 0.0369 0.0421 0.0436 1.30% FillPatchIterator::Initialize 41 0.02815 0.03319 0.0352 1.05% StateData::FillBoundary(geom) 41 0.02824 0.03195 0.03477 1.04% Gravity::interpolate_monopole_grav() 21 0.02657 0.02677 0.02697 0.80% Castro::construct_new_gravity_source() 10 0.02343 0.02482 0.02681 0.80% Castro::computeTemp() 63 0.01785 0.01832 0.01898 0.57% Castro::initialize_do_advance() 10 0.01164 0.01674 0.01776 0.53% FabArray::Saxpy() 20 0.01109 0.01267 0.01359 0.41% Castro::initialize_advance() 10 0.005341 0.01059 0.01355 0.40% FabArray::setDomainBndry() 41 0.006967 0.01065 0.013 0.39% MultiFab::contains_nan() 20 0.01039 0.01112 0.01226 0.37% VisMF::Write(FabArray) 2 0.008774 0.009556 0.01214 0.36% Amr::writePlotFile() 2 0.007432 0.01015 0.01178 0.35% Castro::construct_old_gravity_source() 10 0.007074 0.009786 0.01065 0.32% Castro::initMFs() 1 0.006428 0.006979 0.008042 0.24% Castro::enforce_min_density() 62 0.005829 0.006183 0.006621 0.20% Castro::construct_new_source() 50 0.005697 0.006043 0.006313 0.19% main() 1 0.003888 0.004463 0.004944 0.15% Gravity::get_new_grav_vector() 11 0.003015 0.00354 0.003919 0.12% Gravity::get_old_grav_vector() 10 0.001696 0.00219 0.002724 0.08% Amr::coarseTimeStep() 10 0.001114 0.001814 0.00252 0.08% Castro::finalize_do_advance() 10 0.0005856 0.001114 0.001223 0.04% AmrLevel::FillPatch() 41 0.0008437 0.00105 0.001129 0.03% Amr::timeStep() 10 0.0001446 0.0001911 0.0004211 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002765 0.0003015 0.0003346 0.01% Castro::do_advance_ctu() 10 0.0001564 0.0001716 0.0001944 0.01% Castro::clean_state() 62 0.000147 0.0001621 0.0001759 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001041 0.0001208 0.000145 0.00% StateDataPhysBCFunct::() 41 0.000105 0.0001199 0.0001361 0.00% Castro::do_old_sources() 10 7.969e-05 9.842e-05 0.0001152 0.00% FabArray::ParallelCopy() 41 9.2e-05 0.0001052 0.0001151 0.00% Amr::FinalizeInit() 1 3.406e-06 1.575e-05 9.707e-05 0.00% Castro::advance() 10 3.973e-05 5.148e-05 9.28e-05 0.00% FillPatchSingleLevel 41 7.147e-05 8.014e-05 8.877e-05 0.00% Castro::Castro() 1 4.864e-05 6.674e-05 7.925e-05 0.00% Castro::construct_old_source() 50 5.593e-05 6.898e-05 7.827e-05 0.00% Castro::do_new_sources() 10 5.581e-05 6.129e-05 7.199e-05 0.00% Castro::apply_source_to_state() 20 4.799e-05 5.654e-05 6.552e-05 0.00% Castro::subcycle_advance_ctu() 10 4.375e-05 4.867e-05 5.695e-05 0.00% Amr::defBaseLevel() 1 4.263e-05 4.891e-05 5.473e-05 0.00% Castro::construct_old_gravity() 10 3.349e-05 3.855e-05 4.758e-05 0.00% Castro::construct_new_gravity() 10 3.289e-05 3.73e-05 4.431e-05 0.00% Castro::check_for_nan() 20 2.345e-05 2.72e-05 3.445e-05 0.00% Castro::expand_state() 10 2.376e-05 2.924e-05 3.425e-05 0.00% Castro::post_init() 1 1.482e-05 1.707e-05 2.375e-05 0.00% Castro::post_timestep() 10 1.308e-05 1.567e-05 1.717e-05 0.00% Castro::computeNewDt() 9 8.576e-06 9.779e-06 1.094e-05 0.00% Amr::InitializeInit() 1 2.485e-06 3.432e-06 6.881e-06 0.00% Castro::computeInitialDt() 2 2.842e-06 3.313e-06 4.165e-06 0.00% Amr::init() 1 1.982e-06 2.697e-06 3.887e-06 0.00% Amr::initialInit() 1 1.476e-06 1.974e-06 2.481e-06 0.00% Other 199 0.01022 0.01265 0.01443 0.43% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.351 3.353 3.353 100.00% Amr::coarseTimeStep() 10 3.169 3.169 3.169 94.50% Amr::timeStep() 10 3.157 3.158 3.158 94.18% Castro::advance() 10 3.141 3.141 3.142 93.69% Castro::subcycle_advance_ctu() 10 3.066 3.07 3.084 91.98% Castro::do_advance_ctu() 10 3.066 3.07 3.084 91.98% Castro::construct_ctu_hydro_source() 10 2.333 2.337 2.341 69.82% Gravity::make_radial_gravity() 21 0.3077 0.3166 0.3269 9.75% AmrLevel::FillPatch() 41 0.1861 0.2009 0.2153 6.42% Gravity::get_new_grav_vector() 11 0.2093 0.2108 0.2125 6.34% Castro::construct_old_gravity() 10 0.1827 0.1883 0.197 5.87% Gravity::get_old_grav_vector() 10 0.1819 0.1876 0.1962 5.85% FillPatchIterator::Initialize 41 0.1566 0.1675 0.1904 5.68% Castro::construct_new_gravity() 10 0.1849 0.1856 0.1868 5.57% Castro::initialize_do_advance() 10 0.158 0.1666 0.172 5.13% Amr::init() 1 0.1704 0.1712 0.1717 5.12% Amr::initialInit() 1 0.1555 0.1566 0.1571 4.69% FillPatchIterator::FillFromLevel0() 41 0.1156 0.1236 0.1553 4.63% FillPatchSingleLevel 41 0.1155 0.1235 0.1551 4.63% Amr::InitializeInit() 1 0.06021 0.09305 0.1279 3.81% Amr::defBaseLevel() 1 0.0602 0.09304 0.1279 3.81% FabArray::ParallelCopy() 41 0.0806 0.09137 0.1259 3.75% Castro::expand_state() 10 0.1042 0.1128 0.124 3.70% Castro::clean_state() 62 0.1142 0.117 0.1208 3.60% Castro::initData() 1 0.0427 0.07564 0.1104 3.29% check_for_negative_density() 10 0.02206 0.07521 0.1028 3.06% Castro::do_old_sources() 10 0.09206 0.09587 0.09872 2.94% Amr::FinalizeInit() 1 0.02922 0.06352 0.09562 2.85% Castro::estTimeStep() 21 0.02643 0.06084 0.09016 2.69% amrex::Copy() 193 0.06583 0.08141 0.09001 2.68% FabArray::ParallelCopy_finish() 41 0.03684 0.04906 0.08876 2.65% Castro::initialize_advance() 10 0.05319 0.06797 0.07243 2.16% FabArray::setVal() 143 0.05348 0.06551 0.07117 2.12% Castro::do_new_sources() 10 0.06075 0.06426 0.06904 2.06% Castro::computeInitialDt() 2 0.002146 0.03651 0.06859 2.05% Castro::computeTemp() 63 0.06293 0.0646 0.06697 2.00% Castro::normalize_species() 62 0.04602 0.0469 0.04842 1.44% Castro::reset_internal_energy(MultiFab) 63 0.04494 0.04628 0.04798 1.43% Castro::reset_internal_energy(Fab) 1008 0.04466 0.04598 0.04768 1.42% FabArray::ParallelCopy_nowait() 41 0.03703 0.0422 0.04369 1.30% StateDataPhysBCFunct::() 41 0.02836 0.03207 0.03489 1.04% StateData::FillBoundary(geom) 41 0.02824 0.03195 0.03477 1.04% Castro::construct_new_source() 50 0.02947 0.03086 0.03294 0.98% Gravity::interpolate_monopole_grav() 21 0.02657 0.02677 0.02697 0.80% Castro::construct_new_gravity_source() 10 0.02343 0.02482 0.02681 0.80% Castro::post_init() 1 0.02613 0.02644 0.02666 0.79% Amr::writePlotFile() 2 0.02229 0.02238 0.02267 0.68% Castro::finalize_do_advance() 10 0.01182 0.01695 0.02073 0.62% Castro::post_timestep() 10 0.01525 0.01589 0.01634 0.49% Castro::apply_source_to_state() 20 0.01114 0.01272 0.01365 0.41% FabArray::Saxpy() 20 0.01109 0.01267 0.01359 0.41% FabArray::setDomainBndry() 41 0.006967 0.01065 0.013 0.39% Castro::check_for_nan() 20 0.01042 0.01115 0.01228 0.37% MultiFab::contains_nan() 20 0.01039 0.01112 0.01226 0.37% VisMF::Write(FabArray) 2 0.008774 0.009556 0.01214 0.36% Castro::Castro() 1 0.009933 0.01081 0.01171 0.35% Castro::construct_old_source() 50 0.00713 0.009855 0.01072 0.32% Castro::construct_old_gravity_source() 10 0.007074 0.009786 0.01065 0.32% Castro::computeNewDt() 9 0.008472 0.008501 0.008523 0.25% Castro::initMFs() 1 0.006428 0.006979 0.008042 0.24% Castro::enforce_min_density() 62 0.005829 0.006183 0.006621 0.20% Other 199 0.02017 0.02412 0.0273 0.81% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 31 B 37 B 45 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8658 KiB 8668 KiB 8670 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6764 KiB 6770 KiB 6775 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7132 KiB 7139 KiB 7142 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4568 KiB 4574 KiB 4598 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 209 KiB 226 KiB 246 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 15 KiB 16 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2807 KiB 2810 KiB 2811 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 234 KiB 240 KiB 248 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 36 KiB 41 KiB 59 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2026 KiB 2029 KiB 2029 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 80 KiB 80 KiB 81 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 69 KiB 71 KiB 75 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.06-22-g1d307c2c661a-dirty) finalized