Initializing AMReX (25.10-8-g2ee8ae270dd5)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.10-8-g2ee8ae270dd5) initialized Starting run at 05:33:54 UTC on 2025-10-02. Successfully read inputs file ... Castro git describe: 25.10-1-g0b546a55c AMReX git describe: 25.10-8-g2ee8ae270 Microphysics git describe: 25.10 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015588267 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.342349311 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.337841148 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.319542211 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.318775065 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.373697485 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.3063007 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.296627678 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.297347405 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.30019048 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.29882311 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.00828957 seconds Ending run at 05:33:57 UTC on 2025-10-02. Run time = 3.394322324 Run time without initialization = 3.204720593 Average number of zones advanced per microsecond: 0.818 Average number of zones advanced per microsecond per rank: 0.102 TinyProfiler total time across processes [min...avg...max]: 3.3924 ... 3.3937 ... 3.3944 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2008 2.2299 2.2696 66.86% Gravity::make_radial_gravity() 21 0.2962 0.3071 0.3138 9.24% Castro::initData() 1 0.03776 0.07412 0.121 3.57% Castro::estTimeStep() 21 0.02133 0.07528 0.115 3.39% check_for_negative_density() 10 0.03252 0.07776 0.1109 3.27% amrex::Copy() 193 0.0794 0.08496 0.09098 2.68% FabArray::setVal() 143 0.06715 0.07062 0.0756 2.23% FabArray::ParallelCopy_finish() 41 0.04181 0.05727 0.0691 2.04% FabArray::ParallelCopy_nowait() 41 0.04042 0.04425 0.05712 1.68% Castro::reset_internal_energy(Fab) 1008 0.04129 0.04511 0.04707 1.39% Castro::normalize_species() 62 0.04383 0.04494 0.04598 1.35% FillPatchIterator::Initialize 41 0.02965 0.03438 0.03687 1.09% StateData::FillBoundary(geom) 41 0.03065 0.03207 0.03497 1.03% Castro::construct_new_gravity_source() 10 0.02321 0.02538 0.02817 0.83% Gravity::interpolate_monopole_grav() 21 0.02654 0.02688 0.02719 0.80% Castro::initialize_do_advance() 10 0.01575 0.01761 0.0186 0.55% Castro::computeTemp() 63 0.01666 0.01791 0.01839 0.54% Castro::initialize_advance() 10 0.01062 0.01261 0.01499 0.44% FabArray::setDomainBndry() 41 0.008582 0.01198 0.01376 0.41% FabArray::Saxpy() 20 0.01214 0.01284 0.01367 0.40% VisMF::Write(FabArray) 2 0.009318 0.009945 0.0129 0.38% MultiFab::contains_nan() 20 0.01045 0.01155 0.01245 0.37% Amr::writePlotFile() 2 0.00829 0.01128 0.012 0.35% Castro::construct_old_gravity_source() 10 0.009287 0.009765 0.009992 0.29% Castro::initMFs() 1 0.006705 0.007139 0.008216 0.24% Castro::enforce_min_density() 62 0.005781 0.006199 0.006588 0.19% Castro::construct_new_source() 50 0.005925 0.006182 0.006433 0.19% main() 1 0.003813 0.004292 0.004527 0.13% Gravity::get_new_grav_vector() 11 0.003103 0.003581 0.003871 0.11% Gravity::get_old_grav_vector() 10 0.001895 0.002234 0.00286 0.08% Amr::coarseTimeStep() 10 0.0009904 0.001386 0.001892 0.06% Castro::finalize_do_advance() 10 0.001257 0.001284 0.001384 0.04% AmrLevel::FillPatch() 41 0.0009318 0.001027 0.001189 0.04% Amr::timeStep() 10 0.0001356 0.0001975 0.0004773 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002737 0.0002882 0.0003124 0.01% Castro::do_advance_ctu() 10 0.0001552 0.0001728 0.0001846 0.01% Castro::clean_state() 62 0.0001488 0.00016 0.0001798 0.01% StateDataPhysBCFunct::() 41 0.0001134 0.0001309 0.0001595 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001063 0.0001152 0.0001375 0.00% FabArray::ParallelCopy() 41 9.344e-05 0.0001019 0.0001196 0.00% Castro::do_old_sources() 10 8.341e-05 8.998e-05 0.000104 0.00% Castro::Castro() 1 5.561e-05 8.117e-05 9.69e-05 0.00% Amr::FinalizeInit() 1 3.799e-06 1.525e-05 8.754e-05 0.00% FillPatchSingleLevel 41 7.207e-05 7.635e-05 8.306e-05 0.00% Castro::construct_old_source() 50 5.957e-05 6.957e-05 7.793e-05 0.00% Castro::subcycle_advance_ctu() 10 4.379e-05 5.273e-05 6.814e-05 0.00% Castro::apply_source_to_state() 20 4.201e-05 5.345e-05 6.766e-05 0.00% Castro::do_new_sources() 10 5.318e-05 5.856e-05 6.536e-05 0.00% Castro::advance() 10 4.032e-05 4.83e-05 5.892e-05 0.00% Castro::construct_old_gravity() 10 3.44e-05 4.034e-05 5.12e-05 0.00% Amr::defBaseLevel() 1 3.637e-05 4.178e-05 4.991e-05 0.00% Castro::construct_new_gravity() 10 3.112e-05 3.597e-05 4.473e-05 0.00% Castro::expand_state() 10 2.277e-05 2.941e-05 3.702e-05 0.00% Castro::check_for_nan() 20 2.309e-05 2.464e-05 2.585e-05 0.00% Castro::post_init() 1 1.415e-05 1.759e-05 2.111e-05 0.00% Castro::computeNewDt() 9 8.716e-06 1.069e-05 2.031e-05 0.00% Castro::post_timestep() 10 1.444e-05 1.646e-05 1.893e-05 0.00% Amr::InitializeInit() 1 2.839e-06 4.722e-06 9.309e-06 0.00% Castro::computeInitialDt() 2 2.93e-06 3.473e-06 3.815e-06 0.00% Amr::init() 1 1.485e-06 2.148e-06 2.934e-06 0.00% Amr::initialInit() 1 1.342e-06 1.896e-06 2.271e-06 0.00% Other 199 0.0104 0.01287 0.0149 0.44% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.392 3.394 3.394 100.00% Amr::coarseTimeStep() 10 3.192 3.192 3.192 94.04% Amr::timeStep() 10 3.18 3.181 3.181 93.72% Castro::advance() 10 3.165 3.165 3.165 93.25% Castro::subcycle_advance_ctu() 10 3.085 3.088 3.091 91.07% Castro::do_advance_ctu() 10 3.085 3.088 3.091 91.07% Castro::construct_ctu_hydro_source() 10 2.318 2.329 2.335 68.79% Gravity::make_radial_gravity() 21 0.3132 0.3237 0.3297 9.71% AmrLevel::FillPatch() 41 0.1994 0.2152 0.2212 6.52% Gravity::get_new_grav_vector() 11 0.2151 0.2161 0.2175 6.41% Castro::construct_old_gravity() 10 0.1818 0.1929 0.1986 5.85% Gravity::get_old_grav_vector() 10 0.181 0.1922 0.1978 5.83% Castro::construct_new_gravity() 10 0.1894 0.1908 0.1918 5.65% Amr::init() 1 0.188 0.1887 0.1893 5.58% FillPatchIterator::Initialize 41 0.1685 0.1805 0.1864 5.49% Castro::initialize_do_advance() 10 0.1606 0.169 0.1799 5.30% Amr::initialInit() 1 0.1722 0.173 0.1736 5.11% Amr::InitializeInit() 1 0.05819 0.0954 0.143 4.21% Amr::defBaseLevel() 1 0.05819 0.09539 0.143 4.21% FillPatchIterator::FillFromLevel0() 41 0.1268 0.1341 0.1424 4.20% FillPatchSingleLevel 41 0.1266 0.134 0.1423 4.19% Castro::initData() 1 0.04147 0.07788 0.1247 3.67% Castro::expand_state() 10 0.1071 0.1145 0.1243 3.66% Castro::do_old_sources() 10 0.09611 0.1065 0.1166 3.44% Castro::clean_state() 62 0.1094 0.1138 0.1164 3.43% Castro::estTimeStep() 21 0.02133 0.07528 0.115 3.39% Amr::FinalizeInit() 1 0.02968 0.07757 0.1145 3.37% check_for_negative_density() 10 0.03252 0.07776 0.1109 3.27% FabArray::ParallelCopy() 41 0.09581 0.1017 0.1097 3.23% amrex::Copy() 193 0.0794 0.08496 0.09098 2.68% Castro::computeInitialDt() 2 0.002403 0.05056 0.08764 2.58% Castro::initialize_advance() 10 0.07043 0.07334 0.07635 2.25% FabArray::setVal() 143 0.06715 0.07062 0.0756 2.23% Castro::do_new_sources() 10 0.06107 0.06506 0.07036 2.07% FabArray::ParallelCopy_finish() 41 0.04181 0.05727 0.0691 2.04% Castro::computeTemp() 63 0.05824 0.06331 0.06565 1.93% FabArray::ParallelCopy_nowait() 41 0.04053 0.04435 0.05722 1.69% Castro::reset_internal_energy(MultiFab) 63 0.04158 0.0454 0.04735 1.40% Castro::reset_internal_energy(Fab) 1008 0.04129 0.04511 0.04707 1.39% Castro::normalize_species() 62 0.04383 0.04494 0.04598 1.35% StateDataPhysBCFunct::() 41 0.03076 0.0322 0.03509 1.03% StateData::FillBoundary(geom) 41 0.03065 0.03207 0.03497 1.03% Castro::construct_new_source() 50 0.02915 0.03156 0.03453 1.02% Castro::construct_new_gravity_source() 10 0.02321 0.02538 0.02817 0.83% Gravity::interpolate_monopole_grav() 21 0.02654 0.02688 0.02719 0.80% Castro::post_init() 1 0.02642 0.02655 0.02678 0.79% Amr::writePlotFile() 2 0.02386 0.02414 0.02429 0.72% Castro::finalize_do_advance() 10 0.01168 0.01748 0.02238 0.66% Castro::post_timestep() 10 0.01499 0.01549 0.01603 0.47% FabArray::setDomainBndry() 41 0.008582 0.01198 0.01376 0.41% Castro::apply_source_to_state() 20 0.01219 0.01289 0.01372 0.40% FabArray::Saxpy() 20 0.01214 0.01284 0.01367 0.40% VisMF::Write(FabArray) 2 0.009318 0.009945 0.0129 0.38% Castro::check_for_nan() 20 0.01047 0.01157 0.01248 0.37% MultiFab::contains_nan() 20 0.01045 0.01155 0.01245 0.37% Castro::Castro() 1 0.01057 0.01104 0.01179 0.35% Castro::construct_old_source() 50 0.009348 0.009835 0.01007 0.30% Castro::construct_old_gravity_source() 10 0.009287 0.009765 0.009992 0.29% Castro::computeNewDt() 9 0.008521 0.008531 0.008537 0.25% Castro::initMFs() 1 0.006705 0.007139 0.008216 0.24% Castro::enforce_min_density() 62 0.005781 0.006199 0.006588 0.19% Other 199 0.0205 0.02429 0.0278 0.82% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 31 B 38 B 59 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8661 KiB 8670 KiB 8674 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6731 KiB 6737 KiB 6740 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7132 KiB 7140 KiB 7143 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4543 KiB 4546 KiB 4551 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 222 KiB 236 KiB 248 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 16 KiB 17 KiB 21 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2794 KiB 2797 KiB 2798 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 235 KiB 243 KiB 247 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 41 KiB 44 KiB 47 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 81 KiB 81 KiB 82 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 68 KiB 72 KiB 74 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.10-8-g2ee8ae270dd5) finalized