Initializing AMReX (25.10-11-g26054b26bb65)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.10-11-g26054b26bb65) initialized Starting run at 05:17:28 UTC on 2025-10-08. Successfully read inputs file ... Castro git describe: 25.10-1-g0b546a55c AMReX git describe: 25.10-11-g26054b26b Microphysics git describe: 25.10-2-g3d17f1d7 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.01465941 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.340535198 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.339750582 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.319809017 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.319082235 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.37158294 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.308701398 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.297732517 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.296811211 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.29785171 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.295835594 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007598434 seconds Ending run at 05:17:32 UTC on 2025-10-08. Run time = 3.376262186 Run time without initialization = 3.20013658 Average number of zones advanced per microsecond: 0.819 Average number of zones advanced per microsecond per rank: 0.102 TinyProfiler total time across processes [min...avg...max]: 3.3741 ... 3.3756 ... 3.3763 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1921 2.2308 2.2559 66.82% Gravity::make_radial_gravity() 21 0.2892 0.2963 0.3014 8.93% check_for_negative_density() 10 0.04612 0.07445 0.1155 3.42% Castro::initData() 1 0.03801 0.07198 0.1108 3.28% Castro::estTimeStep() 21 0.03042 0.06666 0.1052 3.12% amrex::Copy() 193 0.07996 0.08476 0.09292 2.75% FabArray::setVal() 143 0.06571 0.07025 0.07439 2.20% FabArray::ParallelCopy_finish() 41 0.03698 0.05898 0.07063 2.09% Castro::normalize_species() 62 0.04413 0.04619 0.05091 1.51% Castro::reset_internal_energy(Fab) 1008 0.04377 0.04621 0.0487 1.44% FabArray::ParallelCopy_nowait() 41 0.04184 0.04351 0.04741 1.40% FillPatchIterator::Initialize 41 0.0298 0.03508 0.03908 1.16% StateData::FillBoundary(geom) 41 0.03002 0.03185 0.03455 1.02% Castro::construct_new_gravity_source() 10 0.02364 0.02551 0.02779 0.82% Gravity::interpolate_monopole_grav() 21 0.02638 0.02663 0.02692 0.80% Castro::construct_old_gravity_source() 10 0.01007 0.01263 0.02236 0.66% FabArray::setDomainBndry() 41 0.008521 0.01215 0.02077 0.62% Castro::initialize_do_advance() 10 0.01672 0.01781 0.01883 0.56% Castro::computeTemp() 63 0.01779 0.01835 0.01881 0.56% FabArray::Saxpy() 20 0.01242 0.01378 0.01523 0.45% Castro::initialize_advance() 10 0.01084 0.01252 0.01435 0.42% MultiFab::contains_nan() 20 0.01078 0.01153 0.01245 0.37% VisMF::Write(FabArray) 2 0.00911 0.009649 0.0121 0.36% Amr::writePlotFile() 2 0.007472 0.01002 0.01061 0.31% Castro::initMFs() 1 0.006472 0.006992 0.008333 0.25% Castro::enforce_min_density() 62 0.005756 0.006222 0.006641 0.20% Castro::construct_new_source() 50 0.005826 0.006218 0.006517 0.19% main() 1 0.003234 0.003965 0.004387 0.13% Gravity::get_new_grav_vector() 11 0.003154 0.003738 0.003976 0.12% Gravity::get_old_grav_vector() 10 0.001797 0.002211 0.002686 0.08% Amr::coarseTimeStep() 10 0.000687 0.001098 0.0014 0.04% Castro::finalize_do_advance() 10 0.001268 0.001308 0.001374 0.04% AmrLevel::FillPatch() 41 0.0009897 0.001082 0.001187 0.04% Amr::timeStep() 10 0.0001469 0.0002008 0.0005046 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002725 0.0002903 0.0003294 0.01% Castro::construct_old_source() 50 6.625e-05 0.0001122 0.0003153 0.01% Castro::do_advance_ctu() 10 0.0001635 0.0001868 0.0002281 0.01% Castro::clean_state() 62 0.0001381 0.0001646 0.0001952 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001006 0.0001298 0.0001742 0.01% StateDataPhysBCFunct::() 41 0.0001154 0.0001332 0.00015 0.00% FabArray::ParallelCopy() 41 9.376e-05 0.0001054 0.0001174 0.00% Castro::do_old_sources() 10 8.196e-05 9.726e-05 0.0001047 0.00% FillPatchSingleLevel 41 7.156e-05 8.373e-05 0.0001004 0.00% Castro::Castro() 1 4.654e-05 6.947e-05 9.68e-05 0.00% Amr::FinalizeInit() 1 2.996e-06 1.48e-05 9.03e-05 0.00% Castro::apply_source_to_state() 20 4.386e-05 5.393e-05 7.108e-05 0.00% Castro::do_new_sources() 10 5.581e-05 5.997e-05 6.902e-05 0.00% Castro::subcycle_advance_ctu() 10 4.708e-05 5.216e-05 5.802e-05 0.00% Castro::construct_old_gravity() 10 3.79e-05 4.331e-05 5.379e-05 0.00% Castro::advance() 10 4.247e-05 4.723e-05 5.144e-05 0.00% Amr::defBaseLevel() 1 3.68e-05 4.432e-05 4.927e-05 0.00% Castro::construct_new_gravity() 10 3.239e-05 3.95e-05 4.757e-05 0.00% Castro::expand_state() 10 2.395e-05 2.879e-05 4.235e-05 0.00% Castro::post_init() 1 1.552e-05 1.954e-05 3.3e-05 0.00% Castro::check_for_nan() 20 2.33e-05 2.581e-05 2.936e-05 0.00% Castro::post_timestep() 10 1.621e-05 1.745e-05 1.916e-05 0.00% Castro::computeNewDt() 9 8.707e-06 9.642e-06 1.036e-05 0.00% Amr::InitializeInit() 1 2.889e-06 3.691e-06 6.266e-06 0.00% Castro::computeInitialDt() 2 2.77e-06 3.401e-06 3.936e-06 0.00% Amr::init() 1 1.706e-06 2.389e-06 3.407e-06 0.00% Amr::initialInit() 1 1.59e-06 2.123e-06 2.812e-06 0.00% Other 199 0.01026 0.01314 0.01492 0.44% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.374 3.376 3.376 100.00% Amr::coarseTimeStep() 10 3.188 3.188 3.188 94.43% Amr::timeStep() 10 3.177 3.178 3.178 94.13% Castro::advance() 10 3.161 3.162 3.162 93.65% Castro::subcycle_advance_ctu() 10 3.082 3.085 3.089 91.50% Castro::do_advance_ctu() 10 3.082 3.085 3.089 91.50% Castro::construct_ctu_hydro_source() 10 2.324 2.326 2.329 68.97% Gravity::make_radial_gravity() 21 0.3064 0.3133 0.3189 9.44% AmrLevel::FillPatch() 41 0.1999 0.2175 0.2333 6.91% Gravity::get_new_grav_vector() 11 0.2109 0.2119 0.2134 6.32% FillPatchIterator::Initialize 41 0.1632 0.1821 0.1961 5.81% Castro::construct_new_gravity() 10 0.1884 0.1888 0.1898 5.62% Castro::construct_old_gravity() 10 0.1806 0.1848 0.1886 5.59% Gravity::get_old_grav_vector() 10 0.1799 0.1841 0.1879 5.56% Amr::init() 1 0.1745 0.1755 0.1758 5.21% Castro::initialize_do_advance() 10 0.1639 0.1683 0.1741 5.16% Amr::initialInit() 1 0.1597 0.1605 0.1609 4.77% FillPatchIterator::FillFromLevel0() 41 0.1115 0.1349 0.1485 4.40% FillPatchSingleLevel 41 0.1114 0.1348 0.1484 4.39% Amr::InitializeInit() 1 0.05913 0.09319 0.1326 3.93% Amr::defBaseLevel() 1 0.05912 0.09319 0.1326 3.93% Castro::clean_state() 62 0.1129 0.1166 0.1245 3.69% Castro::do_old_sources() 10 0.1131 0.1165 0.1198 3.55% Castro::expand_state() 10 0.1087 0.113 0.1195 3.54% check_for_negative_density() 10 0.04612 0.07445 0.1155 3.42% FabArray::ParallelCopy() 41 0.07995 0.1027 0.1147 3.40% Castro::initData() 1 0.04174 0.07565 0.1143 3.38% Castro::estTimeStep() 21 0.03042 0.06666 0.1052 3.12% Amr::FinalizeInit() 1 0.02716 0.06734 0.1017 3.01% amrex::Copy() 193 0.07996 0.08476 0.09292 2.75% Castro::computeInitialDt() 2 0.002189 0.04237 0.07672 2.27% Castro::initialize_advance() 10 0.06903 0.07356 0.07632 2.26% FabArray::setVal() 143 0.06571 0.07025 0.07439 2.20% FabArray::ParallelCopy_finish() 41 0.03698 0.05898 0.07063 2.09% Castro::do_new_sources() 10 0.06172 0.06592 0.07021 2.08% Castro::computeTemp() 63 0.06184 0.06485 0.06784 2.01% Castro::normalize_species() 62 0.04413 0.04619 0.05091 1.51% Castro::reset_internal_energy(MultiFab) 63 0.04404 0.0465 0.04903 1.45% Castro::reset_internal_energy(Fab) 1008 0.04377 0.04621 0.0487 1.44% FabArray::ParallelCopy_nowait() 41 0.04196 0.04361 0.04752 1.41% StateDataPhysBCFunct::() 41 0.03017 0.03198 0.03469 1.03% StateData::FillBoundary(geom) 41 0.03002 0.03185 0.03455 1.02% Castro::construct_new_source() 50 0.02965 0.03173 0.03421 1.01% Castro::construct_new_gravity_source() 10 0.02364 0.02551 0.02779 0.82% Gravity::interpolate_monopole_grav() 21 0.02638 0.02663 0.02692 0.80% Castro::post_init() 1 0.02436 0.02444 0.02454 0.73% Amr::writePlotFile() 2 0.02252 0.02264 0.0228 0.68% Castro::construct_old_source() 50 0.01014 0.01275 0.02268 0.67% Castro::construct_old_gravity_source() 10 0.01007 0.01263 0.02236 0.66% Castro::finalize_do_advance() 10 0.01258 0.0172 0.02209 0.65% FabArray::setDomainBndry() 41 0.008521 0.01215 0.02077 0.62% Castro::post_timestep() 10 0.01537 0.01571 0.01621 0.48% Castro::apply_source_to_state() 20 0.01246 0.01384 0.0153 0.45% FabArray::Saxpy() 20 0.01242 0.01378 0.01523 0.45% Castro::check_for_nan() 20 0.01081 0.01156 0.01248 0.37% MultiFab::contains_nan() 20 0.01078 0.01153 0.01245 0.37% VisMF::Write(FabArray) 2 0.00911 0.009649 0.0121 0.36% Castro::Castro() 1 0.01005 0.01079 0.01158 0.34% Castro::computeNewDt() 9 0.008397 0.008409 0.008424 0.25% Castro::initMFs() 1 0.006472 0.006992 0.008333 0.25% Castro::enforce_min_density() 62 0.005756 0.006222 0.006641 0.20% Other 199 0.02022 0.0248 0.02799 0.83% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 29 B 33 B 46 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8660 KiB 8669 KiB 8672 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6757 KiB 6763 KiB 6766 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7132 KiB 7139 KiB 7142 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4561 KiB 4564 KiB 4568 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 222 KiB 239 KiB 256 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 16 KiB 17 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2805 KiB 2809 KiB 2810 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 231 KiB 236 KiB 240 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 36 KiB 44 KiB 49 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 80 KiB 80 KiB 81 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 68 KiB 70 KiB 71 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.10-11-g26054b26bb65) finalized