Initializing AMReX (25.10-13-g8b1df672b8c2)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.10-13-g8b1df672b8c2) initialized Starting run at 05:17:52 UTC on 2025-10-09. Successfully read inputs file ... Castro git describe: 25.10-1-g0b546a55c AMReX git describe: 25.10-13-g8b1df672b Microphysics git describe: 25.10-2-g3d17f1d7 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014532065 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.35107024 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.324447693 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.319139269 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.314766597 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.351330313 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.306177076 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.297646565 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.306050986 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.296863967 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.298094316 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007476432 seconds Ending run at 05:17:55 UTC on 2025-10-09. Run time = 3.352328232 Run time without initialization = 3.17805186 Average number of zones advanced per microsecond: 0.825 Average number of zones advanced per microsecond per rank: 0.103 TinyProfiler total time across processes [min...avg...max]: 3.3505 ... 3.3516 ... 3.3523 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1609 2.2316 2.2962 68.50% Gravity::make_radial_gravity() 21 0.2911 0.297 0.3131 9.34% check_for_negative_density() 10 0.02414 0.08828 0.161 4.80% Castro::initData() 1 0.03767 0.074 0.1106 3.30% Castro::estTimeStep() 21 0.03087 0.0649 0.1049 3.13% FabArray::ParallelCopy_finish() 41 0.03432 0.04756 0.09169 2.73% amrex::Copy() 193 0.06441 0.07925 0.08718 2.60% FabArray::setVal() 143 0.05126 0.06509 0.07054 2.10% Castro::normalize_species() 62 0.04538 0.04665 0.04886 1.46% Castro::reset_internal_energy(Fab) 1008 0.04399 0.04583 0.04816 1.44% FabArray::ParallelCopy_nowait() 41 0.03597 0.04131 0.04294 1.28% FillPatchIterator::Initialize 41 0.02715 0.03195 0.03419 1.02% StateData::FillBoundary(geom) 41 0.02755 0.03074 0.03262 0.97% Castro::construct_new_gravity_source() 10 0.0232 0.02471 0.02739 0.82% Gravity::interpolate_monopole_grav() 21 0.02652 0.02673 0.02727 0.81% Castro::computeTemp() 63 0.01788 0.01836 0.01924 0.57% Castro::initialize_do_advance() 10 0.01144 0.01606 0.01719 0.51% FabArray::Saxpy() 20 0.01104 0.0126 0.01367 0.41% Castro::initialize_advance() 10 0.005277 0.01067 0.01344 0.40% VisMF::Write(FabArray) 2 0.009097 0.009675 0.01308 0.39% FabArray::setDomainBndry() 41 0.007043 0.01012 0.01232 0.37% MultiFab::contains_nan() 20 0.01028 0.01123 0.01214 0.36% Castro::construct_old_gravity_source() 10 0.007035 0.009525 0.01018 0.30% Amr::writePlotFile() 2 0.007342 0.009549 0.01009 0.30% Castro::initMFs() 1 0.006572 0.007178 0.007914 0.24% Castro::construct_new_source() 50 0.005545 0.006115 0.00653 0.19% main() 1 0.003592 0.004076 0.004436 0.13% Gravity::get_new_grav_vector() 11 0.002859 0.003397 0.003632 0.11% Amr::coarseTimeStep() 10 0.001212 0.002375 0.003091 0.09% Gravity::get_old_grav_vector() 10 0.0015 0.001985 0.002347 0.07% Castro::finalize_do_advance() 10 0.0004907 0.001101 0.001237 0.04% AmrLevel::FillPatch() 41 0.0007049 0.001006 0.0011 0.03% Amr::timeStep() 10 0.0001474 0.0001865 0.0003866 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002731 0.0002828 0.0003046 0.01% Castro::do_advance_ctu() 10 0.0001448 0.0001789 0.0002077 0.01% Castro::clean_state() 62 0.0001382 0.0001526 0.0001682 0.01% StateDataPhysBCFunct::() 41 0.0001113 0.0001275 0.0001518 0.00% Castro::Castro() 1 5.346e-05 7.719e-05 0.0001407 0.00% FillPatchIterator::FillFromLevel0() 41 9.94e-05 0.0001076 0.0001227 0.00% FabArray::ParallelCopy() 41 7.473e-05 9.135e-05 0.0001039 0.00% Castro::do_old_sources() 10 6.974e-05 8.707e-05 9.817e-05 0.00% FillPatchSingleLevel 41 6.715e-05 7.285e-05 8.177e-05 0.00% Castro::construct_old_source() 50 4.808e-05 6.469e-05 7.408e-05 0.00% Amr::FinalizeInit() 1 3.747e-06 1.288e-05 6.854e-05 0.00% Castro::do_new_sources() 10 4.833e-05 5.675e-05 6.351e-05 0.00% Castro::subcycle_advance_ctu() 10 4.218e-05 5.082e-05 5.757e-05 0.00% Castro::advance() 10 3.795e-05 4.635e-05 5.499e-05 0.00% Castro::apply_source_to_state() 20 4.186e-05 4.935e-05 5.491e-05 0.00% Amr::defBaseLevel() 1 3.464e-05 4.244e-05 5.314e-05 0.00% Castro::construct_old_gravity() 10 3.144e-05 3.871e-05 4.757e-05 0.00% Castro::construct_new_gravity() 10 2.997e-05 3.552e-05 4.079e-05 0.00% Castro::check_for_nan() 20 2.347e-05 2.585e-05 2.817e-05 0.00% Castro::expand_state() 10 2.291e-05 2.498e-05 2.648e-05 0.00% Castro::post_timestep() 10 1.553e-05 1.699e-05 1.973e-05 0.00% Castro::post_init() 1 1.455e-05 1.619e-05 1.853e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.051e-05 1.298e-05 1.806e-05 0.00% Castro::computeNewDt() 9 9.35e-06 1.034e-05 1.149e-05 0.00% Amr::initialInit() 1 1.73e-06 2.958e-06 9.626e-06 0.00% Amr::InitializeInit() 1 2.846e-06 4.083e-06 7.322e-06 0.00% Castro::computeInitialDt() 2 3.053e-06 3.793e-06 4.651e-06 0.00% Amr::init() 1 1.943e-06 2.09e-06 2.553e-06 0.00% Other 260 0.01492 0.01911 0.02152 0.64% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.351 3.352 3.352 100.00% Amr::coarseTimeStep() 10 3.166 3.166 3.166 94.45% Amr::timeStep() 10 3.153 3.154 3.155 94.12% Castro::advance() 10 3.137 3.138 3.138 93.61% Castro::subcycle_advance_ctu() 10 3.061 3.066 3.084 91.99% Castro::do_advance_ctu() 10 3.061 3.066 3.084 91.99% Castro::construct_ctu_hydro_source() 10 2.338 2.341 2.343 69.89% Gravity::make_radial_gravity() 21 0.308 0.3135 0.3268 9.75% AmrLevel::FillPatch() 41 0.1826 0.1947 0.2151 6.42% Gravity::get_new_grav_vector() 11 0.207 0.2082 0.2092 6.24% Castro::construct_old_gravity() 10 0.1799 0.1857 0.1972 5.88% Gravity::get_old_grav_vector() 10 0.1791 0.1851 0.1966 5.86% FillPatchIterator::Initialize 41 0.1504 0.1622 0.1899 5.66% Castro::construct_new_gravity() 10 0.1852 0.1858 0.1864 5.56% Amr::init() 1 0.1725 0.1735 0.1739 5.19% Castro::initialize_do_advance() 10 0.1576 0.1629 0.1691 5.04% check_for_negative_density() 10 0.02414 0.08828 0.161 4.80% Amr::initialInit() 1 0.1578 0.1592 0.1598 4.77% FillPatchIterator::FillFromLevel0() 41 0.1082 0.1201 0.1557 4.64% FillPatchSingleLevel 41 0.1081 0.12 0.1556 4.64% Amr::InitializeInit() 1 0.05955 0.09561 0.1325 3.95% Amr::defBaseLevel() 1 0.05955 0.0956 0.1325 3.95% FabArray::ParallelCopy() 41 0.07642 0.08906 0.1279 3.81% Castro::expand_state() 10 0.1037 0.1102 0.1228 3.66% Castro::clean_state() 62 0.1136 0.1165 0.121 3.61% Castro::initData() 1 0.04153 0.07773 0.1139 3.40% Castro::estTimeStep() 21 0.03087 0.0649 0.1049 3.13% Amr::FinalizeInit() 1 0.02624 0.06362 0.1002 2.99% Castro::do_old_sources() 10 0.08985 0.09297 0.09658 2.88% FabArray::ParallelCopy_finish() 41 0.03432 0.04756 0.09169 2.73% amrex::Copy() 193 0.06441 0.07925 0.08718 2.60% Castro::computeInitialDt() 2 0.002073 0.03954 0.07603 2.27% Castro::initialize_advance() 10 0.05021 0.06823 0.07332 2.19% FabArray::setVal() 143 0.05126 0.06509 0.07054 2.10% Castro::do_new_sources() 10 0.05949 0.06412 0.06989 2.08% Castro::computeTemp() 63 0.06219 0.06447 0.06769 2.02% Castro::normalize_species() 62 0.04538 0.04665 0.04886 1.46% Castro::reset_internal_energy(MultiFab) 63 0.04427 0.04611 0.04845 1.45% Castro::reset_internal_energy(Fab) 1008 0.04399 0.04583 0.04816 1.44% FabArray::ParallelCopy_nowait() 41 0.03609 0.04141 0.04304 1.28% Castro::construct_new_source() 50 0.02882 0.03082 0.03383 1.01% StateDataPhysBCFunct::() 41 0.02766 0.03087 0.03274 0.98% StateData::FillBoundary(geom) 41 0.02755 0.03074 0.03262 0.97% Castro::construct_new_gravity_source() 10 0.0232 0.02471 0.02739 0.82% Gravity::interpolate_monopole_grav() 21 0.02652 0.02673 0.02727 0.81% Castro::post_init() 1 0.02304 0.02356 0.02373 0.71% Amr::writePlotFile() 2 0.02171 0.02182 0.02225 0.66% Castro::finalize_do_advance() 10 0.0124 0.0178 0.02171 0.65% Castro::post_timestep() 10 0.01538 0.01602 0.017 0.51% Castro::apply_source_to_state() 20 0.01108 0.01265 0.01372 0.41% FabArray::Saxpy() 20 0.01104 0.0126 0.01367 0.41% VisMF::Write(FabArray) 2 0.009097 0.009675 0.01308 0.39% FabArray::setDomainBndry() 41 0.007043 0.01012 0.01232 0.37% Castro::check_for_nan() 20 0.01031 0.01126 0.01217 0.36% MultiFab::contains_nan() 20 0.01028 0.01123 0.01214 0.36% Castro::Castro() 1 0.009936 0.01096 0.01187 0.35% Castro::construct_old_source() 50 0.007083 0.00959 0.01024 0.31% Castro::construct_old_gravity_source() 10 0.007035 0.009525 0.01018 0.30% Castro::computeNewDt() 9 0.008646 0.008676 0.008697 0.26% Castro::initMFs() 1 0.006572 0.007178 0.007914 0.24% AmrLevel::AmrLevel(dm) 1 0.005412 0.005848 0.006497 0.19% Other 260 0.01958 0.02495 0.02808 0.84% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 30 B 35 B 43 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 15 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8658 KiB 8668 KiB 8671 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6764 KiB 6766 KiB 6768 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7133 KiB 7139 KiB 7141 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4562 KiB 4570 KiB 4593 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 206 KiB 220 KiB 245 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 16 KiB 16 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2805 KiB 2808 KiB 2809 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 234 KiB 238 KiB 248 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 35 KiB 41 KiB 60 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2029 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 79 KiB 79 KiB 80 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 68 KiB 70 KiB 75 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.10-13-g8b1df672b8c2) finalized