Initializing AMReX (25.10-15-gf9ad2c62584f)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.10-15-gf9ad2c62584f) initialized Starting run at 05:32:00 UTC on 2025-10-10. Successfully read inputs file ... Castro git describe: 25.10-3-gf66826a87 AMReX git describe: 25.10-15-gf9ad2c625 Microphysics git describe: 25.10-2-g3d17f1d7 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014378212 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.348974775 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.339118443 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.313903448 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.3151239 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.363998118 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.308183493 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.29930984 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.297452328 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.30524434 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.299757742 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007632125 seconds Ending run at 05:32:03 UTC on 2025-10-10. Run time = 3.372717651 Run time without initialization = 3.203913108 Average number of zones advanced per microsecond: 0.818 Average number of zones advanced per microsecond per rank: 0.102 TinyProfiler total time across processes [min...avg...max]: 3.3710 ... 3.3722 ... 3.3728 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2114 2.2523 2.3113 68.53% Gravity::make_radial_gravity() 21 0.2936 0.2991 0.3134 9.29% check_for_negative_density() 10 0.02876 0.09159 0.1327 3.93% Castro::initData() 1 0.0377 0.0711 0.1039 3.08% Castro::estTimeStep() 21 0.02542 0.06102 0.09819 2.91% amrex::Copy() 193 0.06289 0.07818 0.0878 2.60% FabArray::ParallelCopy_finish() 41 0.03637 0.04834 0.08589 2.55% FabArray::setVal() 143 0.0548 0.06637 0.07195 2.13% Castro::reset_internal_energy(Fab) 1008 0.04529 0.0463 0.04698 1.39% Castro::normalize_species() 62 0.0446 0.04538 0.04672 1.39% FabArray::ParallelCopy_nowait() 41 0.03617 0.04112 0.04293 1.27% FillPatchIterator::Initialize 41 0.02766 0.03225 0.03483 1.03% StateData::FillBoundary(geom) 41 0.02922 0.0312 0.03344 0.99% Gravity::interpolate_monopole_grav() 21 0.02658 0.02693 0.02757 0.82% Castro::construct_new_gravity_source() 10 0.02348 0.02501 0.02687 0.80% Castro::computeTemp() 63 0.01798 0.01828 0.01865 0.55% Castro::initialize_do_advance() 10 0.01156 0.0163 0.01784 0.53% Castro::initialize_advance() 10 0.005435 0.01079 0.01411 0.42% FabArray::Saxpy() 20 0.01077 0.01255 0.0135 0.40% MultiFab::contains_nan() 20 0.01049 0.01131 0.01248 0.37% Amr::writePlotFile() 2 0.007445 0.01015 0.01232 0.37% VisMF::Write(FabArray) 2 0.008762 0.009622 0.01212 0.36% FabArray::setDomainBndry() 41 0.007182 0.009856 0.01186 0.35% Castro::construct_old_gravity_source() 10 0.006768 0.009378 0.009994 0.30% Castro::initMFs() 1 0.0068 0.007123 0.008751 0.26% Castro::enforce_min_density() 62 0.005608 0.006 0.006518 0.19% Castro::construct_new_source() 50 0.00564 0.00609 0.006438 0.19% main() 1 0.003841 0.004305 0.004636 0.14% Gravity::get_new_grav_vector() 11 0.002901 0.003543 0.003931 0.12% Amr::coarseTimeStep() 10 0.001052 0.001833 0.002367 0.07% Gravity::get_old_grav_vector() 10 0.001665 0.002029 0.002367 0.07% Castro::finalize_do_advance() 10 0.0006177 0.001181 0.001508 0.04% AmrLevel::FillPatch() 41 0.0007959 0.001018 0.001109 0.03% Amr::timeStep() 10 0.0001332 0.0001842 0.000416 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002628 0.0002843 0.0003159 0.01% Castro::do_advance_ctu() 10 0.0001665 0.0001848 0.0002141 0.01% Castro::clean_state() 62 0.0001426 0.000156 0.000176 0.01% StateDataPhysBCFunct::() 41 0.0001133 0.0001314 0.0001518 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001037 0.0001108 0.0001172 0.00% Castro::Castro() 1 5.229e-05 8.479e-05 0.0001135 0.00% Castro::do_old_sources() 10 7.699e-05 8.802e-05 0.0001086 0.00% FabArray::ParallelCopy() 41 8.756e-05 9.814e-05 0.0001074 0.00% Castro::construct_old_source() 50 5.313e-05 6.848e-05 7.709e-05 0.00% FillPatchSingleLevel 41 6.976e-05 7.372e-05 7.666e-05 0.00% Castro::do_new_sources() 10 5.03e-05 6.149e-05 7.604e-05 0.00% Amr::FinalizeInit() 1 3.321e-06 1.208e-05 6.947e-05 0.00% Castro::apply_source_to_state() 20 4.238e-05 4.849e-05 5.53e-05 0.00% Castro::subcycle_advance_ctu() 10 4.329e-05 4.897e-05 5.448e-05 0.00% Amr::defBaseLevel() 1 3.67e-05 4.158e-05 5.068e-05 0.00% Castro::advance() 10 3.778e-05 4.488e-05 4.978e-05 0.00% Castro::construct_old_gravity() 10 3.717e-05 4.026e-05 4.868e-05 0.00% Castro::construct_new_gravity() 10 2.975e-05 3.733e-05 4.755e-05 0.00% Castro::check_for_nan() 20 2.287e-05 2.688e-05 4.493e-05 0.00% Castro::expand_state() 10 2.114e-05 2.49e-05 3.189e-05 0.00% Castro::post_init() 1 1.566e-05 1.714e-05 2.212e-05 0.00% Castro::post_timestep() 10 1.48e-05 1.722e-05 2.179e-05 0.00% Castro::computeNewDt() 9 8.942e-06 9.643e-06 1.06e-05 0.00% Amr::initialInit() 1 1.473e-06 2.997e-06 1.017e-05 0.00% Amr::InitializeInit() 1 2.889e-06 4.188e-06 9.284e-06 0.00% Amr::init() 1 1.528e-06 2.611e-06 6.803e-06 0.00% Castro::computeInitialDt() 2 3.017e-06 3.628e-06 4.74e-06 0.00% Other 199 0.01036 0.01279 0.01461 0.43% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.371 3.372 3.373 100.00% Amr::coarseTimeStep() 10 3.192 3.192 3.192 94.63% Amr::timeStep() 10 3.18 3.18 3.181 94.31% Castro::advance() 10 3.164 3.164 3.165 93.83% Castro::subcycle_advance_ctu() 10 3.088 3.093 3.107 92.13% Castro::do_advance_ctu() 10 3.088 3.093 3.107 92.13% Castro::construct_ctu_hydro_source() 10 2.361 2.365 2.368 70.22% Gravity::make_radial_gravity() 21 0.3108 0.3153 0.3259 9.66% AmrLevel::FillPatch() 41 0.1792 0.1952 0.2125 6.30% Gravity::get_new_grav_vector() 11 0.2086 0.2098 0.2111 6.26% Castro::construct_old_gravity() 10 0.1815 0.1865 0.1952 5.79% Gravity::get_old_grav_vector() 10 0.1809 0.1859 0.1946 5.77% Castro::construct_new_gravity() 10 0.1861 0.1868 0.1877 5.57% FillPatchIterator::Initialize 41 0.1501 0.1633 0.1875 5.56% Castro::initialize_do_advance() 10 0.1552 0.1634 0.1693 5.02% Amr::init() 1 0.1673 0.1683 0.1685 5.00% Amr::initialInit() 1 0.1526 0.1536 0.1539 4.56% FillPatchIterator::FillFromLevel0() 41 0.1101 0.1212 0.1527 4.53% FillPatchSingleLevel 41 0.11 0.1211 0.1526 4.52% check_for_negative_density() 10 0.02876 0.09159 0.1327 3.93% Amr::InitializeInit() 1 0.05986 0.09316 0.1258 3.73% Amr::defBaseLevel() 1 0.05986 0.09315 0.1258 3.73% FabArray::ParallelCopy() 41 0.07853 0.08966 0.1223 3.63% Castro::expand_state() 10 0.09997 0.11 0.1216 3.60% Castro::clean_state() 62 0.1136 0.1156 0.1181 3.50% Castro::initData() 1 0.04165 0.07499 0.1072 3.18% Castro::estTimeStep() 21 0.02542 0.06102 0.09819 2.91% Castro::do_old_sources() 10 0.08963 0.09269 0.09606 2.85% Amr::FinalizeInit() 1 0.02674 0.06044 0.09407 2.79% amrex::Copy() 193 0.06289 0.07818 0.0878 2.60% FabArray::ParallelCopy_finish() 41 0.03637 0.04834 0.08589 2.55% Castro::initialize_advance() 10 0.05306 0.06824 0.07308 2.17% FabArray::setVal() 143 0.0548 0.06637 0.07195 2.13% Castro::do_new_sources() 10 0.06057 0.06435 0.07062 2.09% Castro::computeInitialDt() 2 0.002106 0.03573 0.06926 2.05% Castro::computeTemp() 63 0.06374 0.06487 0.06591 1.95% Castro::reset_internal_energy(MultiFab) 63 0.04557 0.04659 0.04726 1.40% Castro::reset_internal_energy(Fab) 1008 0.04529 0.0463 0.04698 1.39% Castro::normalize_species() 62 0.0446 0.04538 0.04672 1.39% FabArray::ParallelCopy_nowait() 41 0.03629 0.04122 0.04302 1.28% StateDataPhysBCFunct::() 41 0.02933 0.03133 0.03357 1.00% StateData::FillBoundary(geom) 41 0.02922 0.0312 0.03344 0.99% Castro::construct_new_source() 50 0.02942 0.0311 0.03322 0.98% Gravity::interpolate_monopole_grav() 21 0.02658 0.02693 0.02757 0.82% Castro::construct_new_gravity_source() 10 0.02348 0.02501 0.02687 0.80% Castro::post_init() 1 0.02401 0.02423 0.02436 0.72% Amr::writePlotFile() 2 0.02225 0.02239 0.02284 0.68% Castro::finalize_do_advance() 10 0.0118 0.01786 0.02175 0.64% Castro::post_timestep() 10 0.01531 0.01567 0.01633 0.48% Castro::apply_source_to_state() 20 0.01081 0.01259 0.01356 0.40% FabArray::Saxpy() 20 0.01077 0.01255 0.0135 0.40% Castro::check_for_nan() 20 0.01052 0.01134 0.0125 0.37% MultiFab::contains_nan() 20 0.01049 0.01131 0.01248 0.37% Castro::Castro() 1 0.01106 0.01138 0.01224 0.36% VisMF::Write(FabArray) 2 0.008762 0.009622 0.01212 0.36% FabArray::setDomainBndry() 41 0.007182 0.009856 0.01186 0.35% Castro::construct_old_source() 50 0.006821 0.009446 0.01007 0.30% Castro::construct_old_gravity_source() 10 0.006768 0.009378 0.009994 0.30% Castro::initMFs() 1 0.0068 0.007123 0.008751 0.26% Castro::computeNewDt() 9 0.008616 0.008627 0.008639 0.26% Castro::enforce_min_density() 62 0.005608 0.006 0.006518 0.19% Other 199 0.02041 0.02431 0.02734 0.81% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 28 B 46 B 101 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 15 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8659 KiB 8668 KiB 8671 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6772 KiB 6779 KiB 6782 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7131 KiB 7139 KiB 7141 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4573 KiB 4581 KiB 4604 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 199 KiB 218 KiB 240 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 14 KiB 16 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2811 KiB 2814 KiB 2815 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 234 KiB 238 KiB 246 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 35 KiB 41 KiB 57 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2029 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 79 KiB 79 KiB 80 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 68 KiB 70 KiB 74 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.10-15-gf9ad2c62584f) finalized