Initializing AMReX (25.10-19-g546a888ef041)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.10-19-g546a888ef041) initialized Starting run at 05:30:51 UTC on 2025-10-13. Successfully read inputs file ... Castro git describe: 25.10-3-gf66826a87 AMReX git describe: 25.10-19-g546a888ef Microphysics git describe: 25.10-2-g3d17f1d7 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014872879 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.346720477 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.356623225 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.317393625 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.316723469 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.371819483 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.303488509 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.296954234 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.296002108 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.297660148 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.297297275 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007659739 seconds Ending run at 05:30:54 UTC on 2025-10-13. Run time = 3.399230199 Run time without initialization = 3.21353601 Average number of zones advanced per microsecond: 0.816 Average number of zones advanced per microsecond per rank: 0.102 TinyProfiler total time across processes [min...avg...max]: 3.3949 ... 3.3982 ... 3.3995 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1806 2.2219 2.2520 66.24% Gravity::make_radial_gravity() 21 0.2978 0.3063 0.318 9.35% check_for_negative_density() 10 0.06134 0.09367 0.1376 4.05% Castro::initData() 1 0.0372 0.07463 0.1107 3.26% Castro::estTimeStep() 21 0.02792 0.06605 0.1022 3.01% amrex::Copy() 193 0.07882 0.0837 0.09388 2.76% FabArray::setVal() 143 0.06695 0.07252 0.07764 2.28% FabArray::ParallelCopy_finish() 41 0.04607 0.0672 0.07617 2.24% Castro::reset_internal_energy(Fab) 1008 0.04495 0.0459 0.04643 1.37% Castro::normalize_species() 62 0.0442 0.04467 0.04565 1.34% FabArray::ParallelCopy_nowait() 41 0.03976 0.04132 0.04266 1.26% FillPatchIterator::Initialize 41 0.02957 0.03371 0.03972 1.17% StateData::FillBoundary(geom) 41 0.02948 0.03105 0.03346 0.98% Gravity::interpolate_monopole_grav() 21 0.02641 0.02704 0.02928 0.86% Castro::construct_new_gravity_source() 10 0.02319 0.02432 0.02548 0.75% Castro::initialize_do_advance() 10 0.0126 0.01751 0.02365 0.70% Castro::computeTemp() 63 0.01782 0.01815 0.01871 0.55% Castro::initialize_advance() 10 0.01062 0.01264 0.01511 0.44% MultiFab::contains_nan() 20 0.01043 0.01222 0.01494 0.44% FabArray::Saxpy() 20 0.01114 0.01251 0.01333 0.39% VisMF::Write(FabArray) 2 0.009516 0.009966 0.01241 0.37% FabArray::setDomainBndry() 41 0.006995 0.01019 0.0123 0.36% Castro::initMFs() 1 0.006482 0.007695 0.01077 0.32% Amr::writePlotFile() 2 0.007394 0.009916 0.01046 0.31% Castro::construct_old_gravity_source() 10 0.007699 0.009202 0.01045 0.31% StateData::define() 4 0.005294 0.006205 0.008398 0.25% Castro::construct_new_source() 50 0.005873 0.006105 0.006367 0.19% main() 1 0.004112 0.00435 0.004651 0.14% Gravity::get_new_grav_vector() 11 0.003092 0.003608 0.003931 0.12% Gravity::get_old_grav_vector() 10 0.001637 0.001982 0.002215 0.07% Amr::coarseTimeStep() 10 0.001039 0.001557 0.00202 0.06% AmrLevel::FillPatch() 41 0.0008293 0.001205 0.001561 0.05% Castro::finalize_do_advance() 10 0.0006195 0.001089 0.00128 0.04% Amr::timeStep() 10 0.0001479 0.0001858 0.0003884 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002694 0.0002827 0.0003188 0.01% Castro::do_advance_ctu() 10 0.0001437 0.0001676 0.0001943 0.01% StateDataPhysBCFunct::() 41 0.0001103 0.0001381 0.0001735 0.01% Castro::clean_state() 62 0.0001396 0.0001539 0.0001711 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001073 0.0001208 0.0001538 0.00% FabArray::ParallelCopy() 41 8.787e-05 9.586e-05 0.0001022 0.00% Castro::do_old_sources() 10 7.333e-05 8.69e-05 0.0001011 0.00% Castro::construct_old_source() 50 5.222e-05 6.925e-05 8.923e-05 0.00% Castro::Castro() 1 5.188e-05 7.395e-05 8.875e-05 0.00% FillPatchSingleLevel 41 7.114e-05 7.802e-05 8.687e-05 0.00% Amr::FinalizeInit() 1 3.477e-06 1.346e-05 7.521e-05 0.00% Castro::construct_old_gravity() 10 3.568e-05 4.852e-05 7.404e-05 0.00% Castro::do_new_sources() 10 4.988e-05 5.52e-05 6.147e-05 0.00% Castro::apply_source_to_state() 20 4.238e-05 4.955e-05 5.829e-05 0.00% Amr::defBaseLevel() 1 3.42e-05 4.95e-05 5.67e-05 0.00% Castro::subcycle_advance_ctu() 10 4.706e-05 4.984e-05 5.321e-05 0.00% Castro::advance() 10 4.033e-05 4.359e-05 4.998e-05 0.00% Castro::construct_new_gravity() 10 3.094e-05 3.617e-05 4.686e-05 0.00% Castro::expand_state() 10 2.097e-05 2.68e-05 4.113e-05 0.00% Castro::check_for_nan() 20 2.373e-05 2.575e-05 2.733e-05 0.00% Castro::post_timestep() 10 1.445e-05 1.829e-05 2.679e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.054e-05 1.384e-05 2.509e-05 0.00% Castro::post_init() 1 1.669e-05 1.845e-05 2.123e-05 0.00% Castro::computeNewDt() 9 9.367e-06 9.774e-06 1.037e-05 0.00% Amr::InitializeInit() 1 2.927e-06 4.438e-06 7.667e-06 0.00% Castro::computeInitialDt() 2 3.035e-06 3.88e-06 4.311e-06 0.00% Amr::initialInit() 1 1.676e-06 2.246e-06 3.047e-06 0.00% Amr::init() 1 1.992e-06 2.164e-06 2.634e-06 0.00% Other 256 0.01082 0.01615 0.01883 0.55% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.395 3.398 3.399 100.00% Amr::coarseTimeStep() 10 3.201 3.201 3.201 94.17% Amr::timeStep() 10 3.19 3.19 3.191 93.86% Castro::advance() 10 3.174 3.174 3.175 93.39% Castro::subcycle_advance_ctu() 10 3.095 3.097 3.099 91.16% Castro::do_advance_ctu() 10 3.095 3.097 3.099 91.16% Castro::construct_ctu_hydro_source() 10 2.332 2.337 2.34 68.83% Gravity::make_radial_gravity() 21 0.3125 0.3221 0.332 9.77% AmrLevel::FillPatch() 41 0.1989 0.2178 0.2297 6.76% Castro::construct_old_gravity() 10 0.1911 0.201 0.2108 6.20% Gravity::get_old_grav_vector() 10 0.1899 0.2002 0.21 6.18% Gravity::get_new_grav_vector() 11 0.2073 0.2084 0.2098 6.17% FillPatchIterator::Initialize 41 0.1661 0.184 0.1923 5.66% Amr::init() 1 0.181 0.1845 0.1857 5.46% Castro::construct_new_gravity() 10 0.1827 0.1836 0.1844 5.43% Castro::initialize_do_advance() 10 0.1646 0.1763 0.1837 5.40% Amr::initialInit() 1 0.166 0.1694 0.1706 5.02% FillPatchIterator::FillFromLevel0() 41 0.119 0.1401 0.1463 4.30% FillPatchSingleLevel 41 0.1189 0.14 0.1462 4.30% check_for_negative_density() 10 0.06134 0.09367 0.1376 4.05% Amr::InitializeInit() 1 0.06116 0.09979 0.1373 4.04% Amr::defBaseLevel() 1 0.06116 0.09979 0.1373 4.04% Castro::expand_state() 10 0.1144 0.1212 0.1288 3.79% FabArray::ParallelCopy() 41 0.08777 0.1087 0.1164 3.43% Castro::clean_state() 62 0.1134 0.1143 0.1156 3.40% Castro::initData() 1 0.04089 0.0784 0.1144 3.36% Amr::FinalizeInit() 1 0.02883 0.06958 0.1093 3.21% Castro::do_old_sources() 10 0.09311 0.1014 0.1069 3.14% Castro::estTimeStep() 21 0.02792 0.06605 0.1022 3.01% amrex::Copy() 193 0.07882 0.0837 0.09388 2.76% Castro::computeInitialDt() 2 0.00218 0.04297 0.08277 2.43% FabArray::setVal() 143 0.06695 0.07252 0.07764 2.28% FabArray::ParallelCopy_finish() 41 0.04607 0.0672 0.07617 2.24% Castro::initialize_advance() 10 0.07218 0.07389 0.07607 2.24% Castro::do_new_sources() 10 0.06077 0.06418 0.06746 1.98% Castro::computeTemp() 63 0.06341 0.06434 0.0649 1.91% Castro::reset_internal_energy(MultiFab) 63 0.04523 0.04619 0.0467 1.37% Castro::reset_internal_energy(Fab) 1008 0.04495 0.0459 0.04643 1.37% Castro::normalize_species() 62 0.0442 0.04467 0.04565 1.34% FabArray::ParallelCopy_nowait() 41 0.03988 0.04143 0.04276 1.26% StateDataPhysBCFunct::() 41 0.02965 0.03119 0.03359 0.99% StateData::FillBoundary(geom) 41 0.02948 0.03105 0.03346 0.98% Castro::construct_new_source() 50 0.02911 0.03043 0.03168 0.93% Gravity::interpolate_monopole_grav() 21 0.02641 0.02704 0.02928 0.86% Castro::post_init() 1 0.02553 0.02598 0.02616 0.77% Castro::construct_new_gravity_source() 10 0.02319 0.02432 0.02548 0.75% Amr::writePlotFile() 2 0.02275 0.02284 0.02297 0.68% Castro::finalize_do_advance() 10 0.01175 0.01568 0.02016 0.59% Castro::post_timestep() 10 0.01519 0.0156 0.0162 0.48% Castro::check_for_nan() 20 0.01045 0.01224 0.01496 0.44% MultiFab::contains_nan() 20 0.01043 0.01222 0.01494 0.44% Castro::Castro() 1 0.01017 0.01158 0.01483 0.44% Castro::apply_source_to_state() 20 0.01119 0.01256 0.01338 0.39% FabArray::Saxpy() 20 0.01114 0.01251 0.01333 0.39% VisMF::Write(FabArray) 2 0.009516 0.009966 0.01241 0.37% FabArray::setDomainBndry() 41 0.006995 0.01019 0.0123 0.36% Castro::initMFs() 1 0.006482 0.007695 0.01077 0.32% Castro::construct_old_source() 50 0.007751 0.009272 0.01054 0.31% Castro::construct_old_gravity_source() 10 0.007699 0.009202 0.01045 0.31% Castro::computeNewDt() 9 0.008476 0.008498 0.008516 0.25% AmrLevel::AmrLevel(dm) 1 0.005304 0.006219 0.008416 0.25% StateData::define() 4 0.005294 0.006205 0.008398 0.25% Other 256 0.01558 0.02471 0.02926 0.86% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 29 B 39 B 51 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8647 KiB 8659 KiB 8663 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6744 KiB 6746 KiB 6753 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7130 KiB 7133 KiB 7139 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4549 KiB 4553 KiB 4559 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 221 KiB 241 KiB 255 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 16 KiB 17 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2800 KiB 2801 KiB 2804 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 234 KiB 241 KiB 249 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 41 KiB 48 KiB 53 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2025 KiB 2027 KiB 2028 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 78 KiB 78 KiB 79 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 71 KiB 75 KiB 79 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.10-19-g546a888ef041) finalized