Initializing AMReX (25.10-22-g2a50fc973a22)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.10-22-g2a50fc973a22) initialized Starting run at 05:18:04 UTC on 2025-10-14. Successfully read inputs file ... Castro git describe: 25.10-3-gf66826a87 AMReX git describe: 25.10-22-g2a50fc973 Microphysics git describe: 25.10-2-g3d17f1d7 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015225774 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.342908174 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.351376984 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.324880069 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.32384554 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.370542369 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.308312392 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.297696692 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.29999566 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.299033189 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.299131301 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007499732 seconds Ending run at 05:18:08 UTC on 2025-10-14. Run time = 3.401220521 Run time without initialization = 3.230423574 Average number of zones advanced per microsecond: 0.811 Average number of zones advanced per microsecond per rank: 0.101 TinyProfiler total time across processes [min...avg...max]: 3.3997 ... 3.4006 ... 3.4012 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1758 2.2413 2.3037 67.73% Gravity::make_radial_gravity() 21 0.2951 0.3051 0.3152 9.27% check_for_negative_density() 10 0.02585 0.09025 0.1524 4.48% Castro::initData() 1 0.03743 0.07156 0.103 3.03% amrex::Copy() 193 0.08079 0.08753 0.09903 2.91% Castro::estTimeStep() 21 0.02338 0.05949 0.0976 2.87% FabArray::setVal() 143 0.06623 0.07132 0.07795 2.29% FabArray::ParallelCopy_finish() 41 0.03675 0.05528 0.07444 2.19% Castro::reset_internal_energy(Fab) 1008 0.04453 0.04646 0.04835 1.42% Castro::normalize_species() 62 0.04493 0.04547 0.04641 1.36% FabArray::ParallelCopy_nowait() 41 0.03889 0.04285 0.04451 1.31% FillPatchIterator::Initialize 41 0.02915 0.03508 0.03766 1.11% StateData::FillBoundary(geom) 41 0.02888 0.03288 0.03612 1.06% Gravity::interpolate_monopole_grav() 21 0.02664 0.02761 0.02949 0.87% Castro::construct_new_gravity_source() 10 0.02325 0.02493 0.02676 0.79% Castro::computeTemp() 63 0.01805 0.01849 0.0192 0.56% Castro::initialize_do_advance() 10 0.0171 0.01823 0.01866 0.55% Castro::initialize_advance() 10 0.01043 0.01249 0.01502 0.44% FabArray::Saxpy() 20 0.01187 0.01267 0.01341 0.39% MultiFab::contains_nan() 20 0.01075 0.01167 0.013 0.38% FabArray::setDomainBndry() 41 0.007667 0.0112 0.01288 0.38% VisMF::Write(FabArray) 2 0.009395 0.00993 0.01256 0.37% Amr::writePlotFile() 2 0.007445 0.01015 0.01078 0.32% Castro::construct_old_gravity_source() 10 0.009031 0.009328 0.009534 0.28% Castro::initMFs() 1 0.006632 0.007189 0.00837 0.25% Castro::construct_new_source() 50 0.00589 0.006197 0.00654 0.19% main() 1 0.003905 0.004201 0.004596 0.14% Gravity::get_new_grav_vector() 11 0.003371 0.003765 0.003982 0.12% Gravity::get_old_grav_vector() 10 0.001675 0.002161 0.002757 0.08% Amr::coarseTimeStep() 10 0.001113 0.001779 0.002521 0.07% Castro::finalize_do_advance() 10 0.001266 0.001369 0.001631 0.05% AmrLevel::FillPatch() 41 0.001002 0.001117 0.001232 0.04% Amr::timeStep() 10 0.0001479 0.0001864 0.0003945 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002711 0.000285 0.0003009 0.01% Castro::do_advance_ctu() 10 0.0001531 0.0001795 0.0002055 0.01% Castro::clean_state() 62 0.0001433 0.000164 0.0001861 0.01% StateDataPhysBCFunct::() 41 0.0001118 0.000132 0.0001445 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001078 0.0001182 0.0001375 0.00% Castro::do_old_sources() 10 7.496e-05 9.155e-05 0.0001151 0.00% Amr::FinalizeInit() 1 3.393e-06 1.711e-05 0.000106 0.00% FabArray::ParallelCopy() 41 9.177e-05 9.725e-05 0.0001044 0.00% Castro::Castro() 1 5.422e-05 7.489e-05 0.0001024 0.00% FillPatchSingleLevel 41 7.159e-05 8.039e-05 9.934e-05 0.00% Castro::construct_old_source() 50 5.593e-05 6.864e-05 8.402e-05 0.00% Castro::do_new_sources() 10 4.711e-05 5.83e-05 6.948e-05 0.00% Amr::defBaseLevel() 1 3.643e-05 5.141e-05 6.33e-05 0.00% Castro::advance() 10 3.822e-05 5.172e-05 6.106e-05 0.00% Castro::subcycle_advance_ctu() 10 4.411e-05 5.217e-05 5.853e-05 0.00% Castro::apply_source_to_state() 20 4.453e-05 4.922e-05 5.316e-05 0.00% Castro::construct_old_gravity() 10 3.299e-05 4.175e-05 4.894e-05 0.00% Castro::construct_new_gravity() 10 2.973e-05 3.529e-05 4.443e-05 0.00% Castro::expand_state() 10 2.048e-05 2.606e-05 2.94e-05 0.00% Castro::check_for_nan() 20 2.429e-05 2.605e-05 2.713e-05 0.00% Castro::post_init() 1 1.501e-05 1.757e-05 2.38e-05 0.00% Castro::post_timestep() 10 1.594e-05 1.757e-05 2.065e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.094e-05 1.21e-05 1.472e-05 0.00% Castro::computeNewDt() 9 8.927e-06 9.891e-06 1.105e-05 0.00% Amr::InitializeInit() 1 3.201e-06 4.049e-06 6.418e-06 0.00% Castro::computeInitialDt() 2 3.075e-06 3.556e-06 4.095e-06 0.00% Amr::initialInit() 1 1.519e-06 1.933e-06 3.125e-06 0.00% Amr::init() 1 1.99e-06 2.288e-06 3.08e-06 0.00% Other 260 0.01634 0.01946 0.02192 0.64% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.4 3.401 3.401 100.00% Amr::coarseTimeStep() 10 3.218 3.218 3.218 94.62% Amr::timeStep() 10 3.206 3.207 3.208 94.31% Castro::advance() 10 3.191 3.191 3.191 93.82% Castro::subcycle_advance_ctu() 10 3.11 3.114 3.116 91.62% Castro::do_advance_ctu() 10 3.11 3.114 3.116 91.62% Castro::construct_ctu_hydro_source() 10 2.35 2.353 2.356 69.28% Gravity::make_radial_gravity() 21 0.312 0.3219 0.3309 9.73% AmrLevel::FillPatch() 41 0.1944 0.2127 0.2309 6.79% Gravity::get_new_grav_vector() 11 0.212 0.2133 0.2148 6.32% Castro::construct_old_gravity() 10 0.186 0.1979 0.2061 6.06% Gravity::get_old_grav_vector() 10 0.1853 0.1972 0.2055 6.04% FillPatchIterator::Initialize 41 0.1631 0.1778 0.1954 5.75% Castro::construct_new_gravity() 10 0.1878 0.1886 0.1894 5.57% Castro::initialize_do_advance() 10 0.1603 0.1699 0.1824 5.36% Amr::init() 1 0.1692 0.1701 0.1705 5.01% Amr::initialInit() 1 0.1538 0.1547 0.155 4.56% check_for_negative_density() 10 0.02585 0.09025 0.1524 4.48% FillPatchIterator::FillFromLevel0() 41 0.1129 0.1316 0.1483 4.36% FillPatchSingleLevel 41 0.1128 0.1314 0.1482 4.36% Castro::expand_state() 10 0.1049 0.114 0.1264 3.72% Amr::InitializeInit() 1 0.05882 0.09323 0.1251 3.68% Amr::defBaseLevel() 1 0.05882 0.09322 0.1251 3.68% Castro::clean_state() 62 0.1131 0.1161 0.1188 3.49% FabArray::ParallelCopy() 41 0.08119 0.09834 0.1135 3.34% Castro::do_old_sources() 10 0.09692 0.1018 0.1081 3.18% Castro::initData() 1 0.04106 0.07524 0.1062 3.12% amrex::Copy() 193 0.08079 0.08753 0.09903 2.91% Castro::estTimeStep() 21 0.02338 0.05949 0.0976 2.87% Amr::FinalizeInit() 1 0.02889 0.06145 0.09616 2.83% FabArray::setVal() 143 0.06623 0.07132 0.07795 2.29% Castro::initialize_advance() 10 0.07116 0.07347 0.07739 2.28% FabArray::ParallelCopy_finish() 41 0.03675 0.05528 0.07444 2.19% Castro::computeInitialDt() 2 0.002196 0.03475 0.06947 2.04% Castro::do_new_sources() 10 0.06158 0.06527 0.06906 2.03% Castro::computeTemp() 63 0.06285 0.06524 0.0673 1.98% Castro::reset_internal_energy(MultiFab) 63 0.0448 0.04674 0.04865 1.43% Castro::reset_internal_energy(Fab) 1008 0.04453 0.04646 0.04835 1.42% Castro::normalize_species() 62 0.04493 0.04547 0.04641 1.36% FabArray::ParallelCopy_nowait() 41 0.039 0.04297 0.04461 1.31% StateDataPhysBCFunct::() 41 0.02903 0.03301 0.03626 1.07% StateData::FillBoundary(geom) 41 0.02888 0.03288 0.03612 1.06% Castro::construct_new_source() 50 0.02924 0.03112 0.0331 0.97% Gravity::interpolate_monopole_grav() 21 0.02664 0.02761 0.02949 0.87% Castro::construct_new_gravity_source() 10 0.02325 0.02493 0.02676 0.79% Castro::post_init() 1 0.02583 0.0261 0.02624 0.77% Amr::writePlotFile() 2 0.023 0.02305 0.02312 0.68% Castro::finalize_do_advance() 10 0.01352 0.01747 0.02189 0.64% Castro::post_timestep() 10 0.01535 0.01578 0.01648 0.48% Castro::apply_source_to_state() 20 0.01191 0.01272 0.01346 0.40% FabArray::Saxpy() 20 0.01187 0.01267 0.01341 0.39% Castro::check_for_nan() 20 0.01078 0.0117 0.01303 0.38% MultiFab::contains_nan() 20 0.01075 0.01167 0.013 0.38% FabArray::setDomainBndry() 41 0.007667 0.0112 0.01288 0.38% VisMF::Write(FabArray) 2 0.009395 0.00993 0.01256 0.37% Castro::Castro() 1 0.01043 0.01101 0.01173 0.34% Castro::construct_old_source() 50 0.009099 0.009397 0.009602 0.28% Castro::construct_old_gravity_source() 10 0.009031 0.009328 0.009534 0.28% Castro::computeNewDt() 9 0.008635 0.008651 0.00866 0.25% Castro::initMFs() 1 0.006632 0.007189 0.00837 0.25% AmrLevel::AmrLevel(dm) 1 0.005504 0.005961 0.006968 0.20% Other 260 0.02098 0.02534 0.02861 0.84% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 33 B 54 B 104 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8658 KiB 8668 KiB 8671 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6773 KiB 6777 KiB 6779 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7132 KiB 7139 KiB 7141 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4568 KiB 4574 KiB 4578 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 211 KiB 231 KiB 255 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 16 KiB 17 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2812 KiB 2814 KiB 2815 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 233 KiB 241 KiB 247 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 36 KiB 42 KiB 49 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2029 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 80 KiB 80 KiB 81 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 70 KiB 74 KiB 77 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.10-22-g2a50fc973a22) finalized