Initializing AMReX (25.10-23-ge92641d5a2d4)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.10-23-ge92641d5a2d4) initialized Starting run at 05:17:42 UTC on 2025-10-15. Successfully read inputs file ... Castro git describe: 25.10-3-gf66826a87 AMReX git describe: 25.10-23-ge92641d5a Microphysics git describe: 25.10-2-g3d17f1d7 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014811006 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.342300479 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.328720134 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.325223145 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.32210987 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.359183391 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.309845991 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.303735296 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.29852387 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.299530033 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.300077178 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007884567 seconds Ending run at 05:17:46 UTC on 2025-10-15. Run time = 3.371727722 Run time without initialization = 3.202027862 Average number of zones advanced per microsecond: 0.819 Average number of zones advanced per microsecond per rank: 0.102 TinyProfiler total time across processes [min...avg...max]: 3.3703 ... 3.3711 ... 3.3718 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2012 2.2403 2.2837 67.73% Gravity::make_radial_gravity() 21 0.2878 0.2947 0.3054 9.06% check_for_negative_density() 10 0.03883 0.08349 0.127 3.77% Castro::initData() 1 0.0384 0.07254 0.1044 3.10% amrex::Copy() 193 0.08001 0.08621 0.09836 2.92% Castro::estTimeStep() 21 0.02342 0.05988 0.09798 2.91% FabArray::setVal() 143 0.0678 0.07117 0.07548 2.24% FabArray::ParallelCopy_finish() 41 0.03854 0.04302 0.04904 1.45% Castro::reset_internal_energy(Fab) 1008 0.04269 0.0455 0.04772 1.42% Castro::normalize_species() 62 0.04484 0.04606 0.0473 1.40% FabArray::ParallelCopy_nowait() 41 0.04137 0.04408 0.04618 1.37% FillPatchIterator::Initialize 41 0.02931 0.03444 0.03675 1.09% StateData::FillBoundary(geom) 41 0.02835 0.03241 0.03555 1.05% Gravity::interpolate_monopole_grav() 21 0.02633 0.02676 0.02721 0.81% Castro::construct_new_gravity_source() 10 0.02416 0.02556 0.02686 0.80% Castro::initialize_do_advance() 10 0.01681 0.01812 0.02022 0.60% Castro::computeTemp() 63 0.01733 0.01822 0.01902 0.56% FabArray::setDomainBndry() 41 0.00836 0.01186 0.01472 0.44% FabArray::Saxpy() 20 0.01188 0.01342 0.01456 0.43% Castro::initialize_advance() 10 0.01052 0.01243 0.01447 0.43% VisMF::Write(FabArray) 2 0.009317 0.009898 0.01229 0.36% MultiFab::contains_nan() 20 0.01057 0.0115 0.01217 0.36% Castro::construct_old_gravity_source() 10 0.01017 0.01065 0.01119 0.33% Amr::writePlotFile() 2 0.007704 0.01018 0.01108 0.33% Castro::initMFs() 1 0.006654 0.007148 0.007677 0.23% Castro::enforce_min_density() 62 0.005982 0.006279 0.006588 0.20% Castro::construct_new_source() 50 0.006068 0.006271 0.00656 0.19% main() 1 0.003756 0.004218 0.004412 0.13% Gravity::get_new_grav_vector() 11 0.003312 0.003628 0.003979 0.12% Gravity::get_old_grav_vector() 10 0.001651 0.002164 0.002778 0.08% Amr::coarseTimeStep() 10 0.00059 0.001498 0.002252 0.07% Castro::finalize_do_advance() 10 0.001275 0.001361 0.001689 0.05% AmrLevel::FillPatch() 41 0.000892 0.001036 0.001164 0.03% Amr::timeStep() 10 0.0001463 0.0001921 0.0003911 0.01% Castro::reset_internal_energy(MultiFab) 63 0.000276 0.0002953 0.0003202 0.01% Castro::do_advance_ctu() 10 0.0001647 0.0001794 0.0002022 0.01% Castro::clean_state() 62 0.0001403 0.0001625 0.0001777 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001043 0.0001257 0.000158 0.00% StateDataPhysBCFunct::() 41 0.0001194 0.0001388 0.0001501 0.00% FabArray::ParallelCopy() 41 8.791e-05 0.0001029 0.0001299 0.00% Castro::do_old_sources() 10 7.864e-05 9.387e-05 0.0001055 0.00% FillPatchSingleLevel 41 6.983e-05 7.958e-05 9.292e-05 0.00% Castro::Castro() 1 5.611e-05 7.083e-05 9.216e-05 0.00% Amr::FinalizeInit() 1 3.41e-06 1.571e-05 8.904e-05 0.00% Castro::construct_old_source() 50 5.843e-05 7.373e-05 7.955e-05 0.00% Castro::subcycle_advance_ctu() 10 4.508e-05 5.073e-05 6.544e-05 0.00% Castro::do_new_sources() 10 5.388e-05 5.799e-05 6.276e-05 0.00% Castro::advance() 10 4.267e-05 4.873e-05 6.114e-05 0.00% Castro::construct_old_gravity() 10 3.803e-05 4.29e-05 5.734e-05 0.00% Castro::apply_source_to_state() 20 4.63e-05 5.127e-05 5.409e-05 0.00% Amr::defBaseLevel() 1 3.581e-05 3.977e-05 4.856e-05 0.00% Castro::construct_new_gravity() 10 3.152e-05 3.69e-05 4.315e-05 0.00% Castro::expand_state() 10 2.195e-05 2.833e-05 3.728e-05 0.00% Castro::check_for_nan() 20 2.332e-05 2.615e-05 2.827e-05 0.00% Castro::post_init() 1 1.537e-05 1.915e-05 2.471e-05 0.00% Castro::post_timestep() 10 1.516e-05 1.792e-05 2.173e-05 0.00% Castro::computeNewDt() 9 8.423e-06 9.654e-06 1.085e-05 0.00% Amr::InitializeInit() 1 2.758e-06 4.082e-06 9.722e-06 0.00% Castro::computeInitialDt() 2 2.976e-06 3.734e-06 4.514e-06 0.00% Amr::init() 1 1.842e-06 2.349e-06 3.143e-06 0.00% Amr::initialInit() 1 1.552e-06 2.029e-06 2.915e-06 0.00% Other 199 0.01068 0.01308 0.01459 0.43% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.37 3.371 3.372 100.00% Amr::coarseTimeStep() 10 3.19 3.19 3.19 94.60% Amr::timeStep() 10 3.178 3.179 3.18 94.30% Castro::advance() 10 3.162 3.163 3.163 93.81% Castro::subcycle_advance_ctu() 10 3.083 3.085 3.087 91.56% Castro::do_advance_ctu() 10 3.082 3.085 3.087 91.56% Castro::construct_ctu_hydro_source() 10 2.335 2.345 2.35 69.69% Gravity::make_radial_gravity() 21 0.3041 0.3117 0.3214 9.53% AmrLevel::FillPatch() 41 0.1913 0.2034 0.2127 6.31% Gravity::get_new_grav_vector() 11 0.2078 0.2086 0.2094 6.21% Castro::construct_old_gravity() 10 0.1801 0.1865 0.1952 5.79% Gravity::get_old_grav_vector() 10 0.1793 0.1858 0.1945 5.77% Castro::construct_new_gravity() 10 0.1848 0.1854 0.1862 5.52% FillPatchIterator::Initialize 41 0.1558 0.1664 0.1757 5.21% Castro::initialize_do_advance() 10 0.1582 0.1678 0.1741 5.16% Amr::init() 1 0.1683 0.1689 0.1695 5.03% Amr::initialInit() 1 0.1533 0.1538 0.1544 4.58% check_for_negative_density() 10 0.03883 0.08349 0.127 3.77% Amr::InitializeInit() 1 0.05916 0.09404 0.1262 3.74% Amr::defBaseLevel() 1 0.05916 0.09404 0.1262 3.74% FillPatchIterator::FillFromLevel0() 41 0.1158 0.1201 0.1242 3.68% FillPatchSingleLevel 41 0.1157 0.1199 0.1241 3.68% Castro::expand_state() 10 0.1037 0.1124 0.1182 3.51% Castro::clean_state() 62 0.1131 0.1157 0.1181 3.50% Castro::initData() 1 0.04253 0.07637 0.1081 3.20% Castro::do_old_sources() 10 0.09367 0.09973 0.1065 3.16% amrex::Copy() 193 0.08001 0.08621 0.09836 2.92% Castro::estTimeStep() 21 0.02342 0.05988 0.09798 2.91% Amr::FinalizeInit() 1 0.02732 0.0598 0.09466 2.81% FabArray::ParallelCopy() 41 0.08373 0.08732 0.09124 2.71% Castro::initialize_advance() 10 0.072 0.07392 0.07666 2.27% FabArray::setVal() 143 0.0678 0.07117 0.07548 2.24% Castro::do_new_sources() 10 0.0625 0.06627 0.0706 2.09% Castro::computeInitialDt() 2 0.00217 0.03473 0.06952 2.06% Castro::computeTemp() 63 0.06031 0.06402 0.06706 1.99% FabArray::ParallelCopy_finish() 41 0.03854 0.04302 0.04904 1.45% Castro::reset_internal_energy(MultiFab) 63 0.04298 0.0458 0.04803 1.42% Castro::reset_internal_energy(Fab) 1008 0.04269 0.0455 0.04772 1.42% Castro::normalize_species() 62 0.04484 0.04606 0.0473 1.40% FabArray::ParallelCopy_nowait() 41 0.04148 0.04419 0.0463 1.37% StateDataPhysBCFunct::() 41 0.0285 0.03255 0.03568 1.06% StateData::FillBoundary(geom) 41 0.02835 0.03241 0.03555 1.05% Castro::construct_new_source() 50 0.0303 0.03183 0.03326 0.99% Gravity::interpolate_monopole_grav() 21 0.02633 0.02676 0.02721 0.81% Castro::construct_new_gravity_source() 10 0.02416 0.02556 0.02686 0.80% Castro::post_init() 1 0.02434 0.02453 0.02467 0.73% Amr::writePlotFile() 2 0.02294 0.02303 0.02335 0.69% Castro::finalize_do_advance() 10 0.01344 0.01803 0.02203 0.65% Castro::post_timestep() 10 0.01535 0.0159 0.01669 0.49% FabArray::setDomainBndry() 41 0.00836 0.01186 0.01472 0.44% Castro::apply_source_to_state() 20 0.01192 0.01347 0.01461 0.43% FabArray::Saxpy() 20 0.01188 0.01342 0.01456 0.43% VisMF::Write(FabArray) 2 0.009317 0.009898 0.01229 0.36% Castro::check_for_nan() 20 0.01059 0.01153 0.0122 0.36% MultiFab::contains_nan() 20 0.01057 0.0115 0.01217 0.36% Castro::Castro() 1 0.01021 0.01117 0.0119 0.35% Castro::construct_old_source() 50 0.01023 0.01073 0.01127 0.33% Castro::construct_old_gravity_source() 10 0.01017 0.01065 0.01119 0.33% Castro::computeNewDt() 9 0.008494 0.008503 0.008517 0.25% Castro::initMFs() 1 0.006654 0.007148 0.007677 0.23% Castro::enforce_min_density() 62 0.005982 0.006279 0.006588 0.20% Other 199 0.02091 0.02445 0.02715 0.81% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 31 B 40 B 70 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8660 KiB 8669 KiB 8673 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6771 KiB 6776 KiB 6778 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7133 KiB 7140 KiB 7142 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4568 KiB 4571 KiB 4575 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 212 KiB 227 KiB 236 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 16 KiB 17 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2811 KiB 2813 KiB 2814 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 229 KiB 235 KiB 243 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 38 KiB 39 KiB 41 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 79 KiB 79 KiB 79 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 68 KiB 70 KiB 74 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.10-23-ge92641d5a2d4) finalized