Initializing AMReX (25.10-24-g428537425149)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.10-24-g428537425149) initialized Starting run at 05:23:06 UTC on 2025-10-16. Successfully read inputs file ... Castro git describe: 25.10-3-gf66826a87 AMReX git describe: 25.10-24-g428537425 Microphysics git describe: 25.10-2-g3d17f1d7 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015393983 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.343060683 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.327111165 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.321378267 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.321452327 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.375724709 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.309652655 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.299578162 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.300362237 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.300389828 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.300619742 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007907753 seconds Ending run at 05:23:10 UTC on 2025-10-16. Run time = 3.409502686 Run time without initialization = 3.212654629 Average number of zones advanced per microsecond: 0.816 Average number of zones advanced per microsecond per rank: 0.102 TinyProfiler total time across processes [min...avg...max]: 3.4026 ... 3.4069 ... 3.4098 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1606 2.2465 2.2796 66.85% Gravity::make_radial_gravity() 21 0.2996 0.3042 0.312 9.15% check_for_negative_density() 10 0.04025 0.07382 0.1629 4.78% Castro::estTimeStep() 21 0.02107 0.07069 0.1179 3.46% Castro::initData() 1 0.03785 0.07752 0.1155 3.39% amrex::Copy() 193 0.08115 0.08556 0.09032 2.65% FabArray::setVal() 143 0.0666 0.0711 0.07395 2.17% FabArray::ParallelCopy_finish() 41 0.04898 0.05337 0.05765 1.69% Castro::reset_internal_energy(Fab) 1008 0.0443 0.04638 0.04735 1.39% Castro::normalize_species() 62 0.04532 0.04592 0.04659 1.37% FabArray::ParallelCopy_nowait() 41 0.04002 0.04268 0.04393 1.29% FillPatchIterator::Initialize 41 0.02975 0.03481 0.03769 1.11% StateData::FillBoundary(geom) 41 0.0289 0.032 0.03394 1.00% Gravity::interpolate_monopole_grav() 21 0.02678 0.02731 0.02789 0.82% Castro::construct_new_gravity_source() 10 0.02344 0.02488 0.02748 0.81% FabArray::setDomainBndry() 41 0.008029 0.01195 0.01953 0.57% Castro::computeTemp() 63 0.01814 0.01837 0.01859 0.55% Castro::initialize_do_advance() 10 0.01645 0.01766 0.01811 0.53% Castro::initialize_advance() 10 0.01037 0.01267 0.01521 0.45% FabArray::Saxpy() 20 0.01223 0.01295 0.01393 0.41% VisMF::Write(FabArray) 2 0.009311 0.009933 0.01271 0.37% MultiFab::contains_nan() 20 0.01077 0.01132 0.012 0.35% Castro::initMFs() 1 0.00639 0.008092 0.0117 0.34% Amr::writePlotFile() 2 0.007919 0.01066 0.01146 0.34% Castro::construct_old_gravity_source() 10 0.008849 0.009784 0.0112 0.33% StateData::define() 4 0.005261 0.006659 0.009444 0.28% Castro::construct_new_source() 50 0.006095 0.006263 0.006425 0.19% main() 1 0.003544 0.004236 0.004513 0.13% Gravity::get_new_grav_vector() 11 0.003249 0.003718 0.003969 0.12% Gravity::get_old_grav_vector() 10 0.001818 0.00221 0.002496 0.07% Amr::coarseTimeStep() 10 0.001048 0.001632 0.002259 0.07% Castro::finalize_do_advance() 10 0.00121 0.001318 0.001441 0.04% AmrLevel::FillPatch() 41 0.0008608 0.0009965 0.00112 0.03% Amr::timeStep() 10 0.000153 0.0001949 0.0004014 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002844 0.0002897 0.0003012 0.01% Castro::do_advance_ctu() 10 0.0001536 0.0001804 0.0002081 0.01% Castro::clean_state() 62 0.0001441 0.0001677 0.0001935 0.01% StateDataPhysBCFunct::() 41 0.0001233 0.0001424 0.0001671 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001031 0.0001197 0.0001427 0.00% Castro::do_old_sources() 10 8.018e-05 9.743e-05 0.0001385 0.00% FabArray::ParallelCopy() 41 9.339e-05 0.0001078 0.0001381 0.00% Amr::FinalizeInit() 1 3.71e-06 1.605e-05 9.349e-05 0.00% Castro::construct_old_source() 50 5.512e-05 7.423e-05 9.332e-05 0.00% Castro::Castro() 1 4.817e-05 5.537e-05 8.47e-05 0.00% FillPatchSingleLevel 41 6.139e-05 6.664e-05 7.82e-05 0.00% Castro::do_new_sources() 10 5.264e-05 5.959e-05 6.575e-05 0.00% Castro::subcycle_advance_ctu() 10 4.514e-05 5.32e-05 6.338e-05 0.00% Castro::advance() 10 3.782e-05 4.497e-05 5.638e-05 0.00% Amr::defBaseLevel() 1 2.855e-05 3.765e-05 5.489e-05 0.00% Castro::apply_source_to_state() 20 3.969e-05 4.934e-05 5.464e-05 0.00% Castro::construct_old_gravity() 10 3.59e-05 3.979e-05 4.503e-05 0.00% Castro::construct_new_gravity() 10 3.107e-05 3.41e-05 3.791e-05 0.00% Castro::expand_state() 10 2.409e-05 2.733e-05 3.442e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.674e-05 2.103e-05 3.065e-05 0.00% Castro::check_for_nan() 20 2.274e-05 2.558e-05 2.763e-05 0.00% Castro::post_init() 1 1.645e-05 1.794e-05 2.029e-05 0.00% Castro::post_timestep() 10 1.467e-05 1.576e-05 1.669e-05 0.00% Castro::computeNewDt() 9 8.182e-06 9.381e-06 1.064e-05 0.00% Amr::initialInit() 1 1.7e-06 2.806e-06 8.971e-06 0.00% Amr::InitializeInit() 1 3.1e-06 4.095e-06 6.914e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.559e-06 4.675e-06 6.264e-06 0.00% Castro::computeInitialDt() 2 3.221e-06 3.716e-06 4.304e-06 0.00% Amr::init() 1 2.032e-06 2.438e-06 2.719e-06 0.00% Other 255 0.01094 0.01779 0.02215 0.65% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.403 3.407 3.41 100.00% Amr::coarseTimeStep() 10 3.2 3.2 3.2 93.86% Amr::timeStep() 10 3.188 3.189 3.19 93.54% Castro::advance() 10 3.173 3.173 3.173 93.06% Castro::subcycle_advance_ctu() 10 3.092 3.096 3.098 90.85% Castro::do_advance_ctu() 10 3.092 3.096 3.098 90.85% Castro::construct_ctu_hydro_source() 10 2.339 2.341 2.345 68.76% Gravity::make_radial_gravity() 21 0.3171 0.3213 0.3272 9.60% AmrLevel::FillPatch() 41 0.1924 0.2097 0.2211 6.49% Gravity::get_new_grav_vector() 11 0.209 0.2099 0.2106 6.18% Castro::construct_old_gravity() 10 0.1933 0.1973 0.2023 5.93% Gravity::get_old_grav_vector() 10 0.1926 0.1967 0.2016 5.91% Amr::init() 1 0.1894 0.194 0.1966 5.76% FillPatchIterator::Initialize 41 0.164 0.1754 0.1855 5.44% Castro::construct_new_gravity() 10 0.1839 0.1842 0.1845 5.41% Amr::initialInit() 1 0.174 0.1786 0.181 5.31% Castro::initialize_do_advance() 10 0.1648 0.1695 0.1741 5.11% check_for_negative_density() 10 0.04025 0.07382 0.1629 4.78% Amr::InitializeInit() 1 0.06218 0.1042 0.1443 4.23% Amr::defBaseLevel() 1 0.06217 0.1042 0.1443 4.23% FillPatchIterator::FillFromLevel0() 41 0.1232 0.1286 0.1357 3.98% FillPatchSingleLevel 41 0.1231 0.1285 0.1356 3.98% Castro::initData() 1 0.04131 0.08115 0.1193 3.50% Castro::expand_state() 10 0.11 0.1144 0.1193 3.50% Castro::clean_state() 62 0.114 0.1165 0.118 3.46% Amr::FinalizeInit() 1 0.02976 0.07439 0.1179 3.46% Castro::estTimeStep() 21 0.02107 0.07069 0.1179 3.46% Castro::do_old_sources() 10 0.09308 0.1025 0.1081 3.17% FabArray::ParallelCopy() 41 0.09202 0.09627 0.1015 2.98% amrex::Copy() 193 0.08115 0.08556 0.09032 2.65% Castro::computeInitialDt() 2 0.002288 0.04696 0.09031 2.65% Castro::initialize_advance() 10 0.07181 0.07389 0.07765 2.28% FabArray::setVal() 143 0.0666 0.0711 0.07395 2.17% Castro::do_new_sources() 10 0.0621 0.06553 0.07045 2.07% Castro::computeTemp() 63 0.06278 0.06504 0.06606 1.94% FabArray::ParallelCopy_finish() 41 0.04898 0.05337 0.05765 1.69% Castro::reset_internal_energy(MultiFab) 63 0.04459 0.04667 0.04764 1.40% Castro::reset_internal_energy(Fab) 1008 0.0443 0.04638 0.04735 1.39% Castro::normalize_species() 62 0.04532 0.04592 0.04659 1.37% FabArray::ParallelCopy_nowait() 41 0.04014 0.04279 0.04404 1.29% StateDataPhysBCFunct::() 41 0.02906 0.03214 0.03409 1.00% StateData::FillBoundary(geom) 41 0.0289 0.032 0.03394 1.00% Castro::construct_new_source() 50 0.02967 0.03114 0.03379 0.99% Gravity::interpolate_monopole_grav() 21 0.02678 0.02731 0.02789 0.82% Castro::construct_new_gravity_source() 10 0.02344 0.02488 0.02748 0.81% Castro::post_init() 1 0.02679 0.027 0.02726 0.80% Amr::writePlotFile() 2 0.02326 0.0235 0.02373 0.70% Castro::finalize_do_advance() 10 0.01165 0.0167 0.0205 0.60% FabArray::setDomainBndry() 41 0.008029 0.01195 0.01953 0.57% Castro::Castro() 1 0.009543 0.01165 0.0161 0.47% Castro::post_timestep() 10 0.01546 0.01588 0.01606 0.47% Castro::apply_source_to_state() 20 0.01228 0.013 0.01398 0.41% FabArray::Saxpy() 20 0.01223 0.01295 0.01393 0.41% VisMF::Write(FabArray) 2 0.009311 0.009933 0.01271 0.37% Castro::check_for_nan() 20 0.0108 0.01135 0.01203 0.35% MultiFab::contains_nan() 20 0.01077 0.01132 0.012 0.35% Castro::initMFs() 1 0.00639 0.008092 0.0117 0.34% Castro::construct_old_source() 50 0.008905 0.009858 0.01129 0.33% Castro::construct_old_gravity_source() 10 0.008849 0.009784 0.0112 0.33% AmrLevel::AmrLevel(dm) 1 0.005278 0.00668 0.009474 0.28% StateData::define() 4 0.005261 0.006659 0.009444 0.28% Castro::computeNewDt() 9 0.008339 0.008352 0.008374 0.25% DistributionMapping::SFCProcessorMapDoIt() 1 2.921e-05 0.004648 0.00716 0.21% Other 255 0.0157 0.0228 0.0277 0.81% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 32 B 41 B 55 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 13 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8644 KiB 8655 KiB 8661 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6716 KiB 6727 KiB 6738 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7119 KiB 7131 KiB 7141 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4532 KiB 4539 KiB 4545 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 214 KiB 230 KiB 242 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 16 KiB 17 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2788 KiB 2793 KiB 2798 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 237 KiB 240 KiB 244 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 39 KiB 42 KiB 44 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2023 KiB 2026 KiB 2027 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 78 KiB 79 KiB 79 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 72 KiB 74 KiB 76 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.10-24-g428537425149) finalized