Initializing AMReX (25.10-25-gd4b3f266f527)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.10-25-gd4b3f266f527) initialized Starting run at 05:17:39 UTC on 2025-10-17. Successfully read inputs file ... Castro git describe: 25.10-3-gf66826a87 AMReX git describe: 25.10-25-gd4b3f266f Microphysics git describe: 25.10-2-g3d17f1d7 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014313381 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.340687425 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.323784704 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.346514169 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.316576132 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.359640461 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.307333847 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.300610216 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.30457131 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.305841523 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.303758476 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007451821 seconds Ending run at 05:17:42 UTC on 2025-10-17. Run time = 3.388680865 Run time without initialization = 3.221803666 Average number of zones advanced per microsecond: 0.814 Average number of zones advanced per microsecond per rank: 0.102 TinyProfiler total time across processes [min...avg...max]: 3.3873 ... 3.3882 ... 3.3892 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2112 2.2451 2.2979 67.80% Gravity::make_radial_gravity() 21 0.2967 0.3041 0.3178 9.38% check_for_negative_density() 10 0.03153 0.09205 0.1311 3.87% Castro::initData() 1 0.03746 0.07236 0.1034 3.05% FabArray::ParallelCopy_finish() 41 0.04548 0.05677 0.09996 2.95% Castro::estTimeStep() 21 0.02513 0.05917 0.0924 2.73% amrex::Copy() 193 0.06348 0.07996 0.08929 2.63% FabArray::setVal() 143 0.05333 0.06536 0.0693 2.04% Castro::normalize_species() 62 0.05038 0.05286 0.05687 1.68% Castro::reset_internal_energy(Fab) 1008 0.04285 0.0464 0.04863 1.43% FabArray::ParallelCopy_nowait() 41 0.03461 0.04129 0.04355 1.29% FillPatchIterator::Initialize 41 0.02793 0.03284 0.03563 1.05% StateData::FillBoundary(geom) 41 0.02827 0.031 0.03356 0.99% Gravity::interpolate_monopole_grav() 21 0.02686 0.02709 0.0278 0.82% Castro::construct_new_gravity_source() 10 0.02324 0.02479 0.02632 0.78% Castro::computeTemp() 63 0.01775 0.01837 0.01916 0.57% FabArray::Saxpy() 20 0.01048 0.01321 0.01801 0.53% Castro::initialize_do_advance() 10 0.01176 0.01614 0.01778 0.52% Castro::initialize_advance() 10 0.005295 0.0107 0.01328 0.39% MultiFab::contains_nan() 20 0.01042 0.01133 0.0123 0.36% Amr::writePlotFile() 2 0.007364 0.009905 0.0121 0.36% VisMF::Write(FabArray) 2 0.008745 0.009402 0.01179 0.35% FabArray::setDomainBndry() 41 0.007049 0.009774 0.01147 0.34% Castro::construct_old_gravity_source() 10 0.0068 0.009613 0.01035 0.31% Castro::initMFs() 1 0.006502 0.007039 0.007633 0.23% Castro::construct_new_source() 50 0.005627 0.006392 0.006818 0.20% Castro::enforce_min_density() 62 0.00556 0.005981 0.006547 0.19% main() 1 0.003601 0.004176 0.004479 0.13% Amr::coarseTimeStep() 10 0.00178 0.002939 0.004083 0.12% Gravity::get_new_grav_vector() 11 0.003007 0.003339 0.003604 0.11% Gravity::get_old_grav_vector() 10 0.001602 0.002023 0.002562 0.08% Castro::finalize_do_advance() 10 0.0005693 0.001145 0.001301 0.04% AmrLevel::FillPatch() 41 0.0007151 0.0008763 0.001034 0.03% Amr::timeStep() 10 0.0001383 0.0001983 0.0004848 0.01% StateDataPhysBCFunct::() 41 0.0001207 0.000157 0.0003381 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002847 0.000295 0.0003175 0.01% Castro::do_advance_ctu() 10 0.0001571 0.0001866 0.0002437 0.01% Castro::clean_state() 62 0.0001513 0.0001686 0.0002141 0.01% Castro::do_old_sources() 10 8.415e-05 9.413e-05 0.0001239 0.00% FabArray::ParallelCopy() 41 9.184e-05 0.0001038 0.0001197 0.00% FillPatchIterator::FillFromLevel0() 41 9.889e-05 0.000105 0.0001114 0.00% Castro::apply_source_to_state() 20 4.403e-05 5.697e-05 9.783e-05 0.00% Amr::FinalizeInit() 1 3.01e-06 1.475e-05 9.107e-05 0.00% Castro::Castro() 1 5.214e-05 6.297e-05 8.656e-05 0.00% Castro::construct_old_source() 50 5.29e-05 6.658e-05 7.792e-05 0.00% FillPatchSingleLevel 41 5.534e-05 6.397e-05 7.176e-05 0.00% Castro::do_new_sources() 10 5.01e-05 6.125e-05 6.923e-05 0.00% Castro::subcycle_advance_ctu() 10 3.853e-05 5.019e-05 6.767e-05 0.00% Castro::advance() 10 3.74e-05 4.29e-05 5.248e-05 0.00% Castro::construct_old_gravity() 10 3.648e-05 4.204e-05 4.803e-05 0.00% Castro::expand_state() 10 2.17e-05 2.657e-05 4.389e-05 0.00% Amr::defBaseLevel() 1 2.998e-05 3.476e-05 4.306e-05 0.00% Castro::construct_new_gravity() 10 3.325e-05 3.645e-05 3.979e-05 0.00% Castro::check_for_nan() 20 2.249e-05 2.536e-05 2.876e-05 0.00% Castro::post_init() 1 1.448e-05 1.744e-05 2.386e-05 0.00% Castro::post_timestep() 10 1.331e-05 1.645e-05 2.142e-05 0.00% Castro::computeNewDt() 9 7.747e-06 1.232e-05 1.624e-05 0.00% Amr::InitializeInit() 1 2.85e-06 4.376e-06 9.517e-06 0.00% Castro::computeInitialDt() 2 3.034e-06 3.617e-06 4.824e-06 0.00% Amr::initialInit() 1 1.423e-06 2.096e-06 3.136e-06 0.00% Amr::init() 1 1.762e-06 2.274e-06 2.874e-06 0.00% Other 199 0.01025 0.01275 0.01468 0.43% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.387 3.388 3.389 100.00% Amr::coarseTimeStep() 10 3.21 3.21 3.21 94.71% Amr::timeStep() 10 3.196 3.197 3.198 94.37% Castro::advance() 10 3.179 3.18 3.18 93.83% Castro::subcycle_advance_ctu() 10 3.103 3.107 3.122 92.13% Castro::do_advance_ctu() 10 3.103 3.107 3.122 92.12% Castro::construct_ctu_hydro_source() 10 2.351 2.36 2.365 69.77% Gravity::make_radial_gravity() 21 0.3126 0.3199 0.331 9.77% AmrLevel::FillPatch() 41 0.1891 0.2051 0.2228 6.57% Gravity::get_new_grav_vector() 11 0.2116 0.2131 0.2147 6.33% FillPatchIterator::Initialize 41 0.1582 0.1722 0.1983 5.85% Castro::construct_old_gravity() 10 0.1807 0.1876 0.1967 5.80% Gravity::get_old_grav_vector() 10 0.18 0.1869 0.1961 5.78% Castro::construct_new_gravity() 10 0.1897 0.1908 0.1921 5.67% Castro::initialize_do_advance() 10 0.156 0.1624 0.1683 4.96% Amr::init() 1 0.1656 0.1663 0.1671 4.93% FillPatchIterator::FillFromLevel0() 41 0.1183 0.1296 0.1634 4.82% FillPatchSingleLevel 41 0.1182 0.1295 0.1632 4.82% Amr::initialInit() 1 0.1512 0.1518 0.1525 4.50% FabArray::ParallelCopy() 41 0.08757 0.09827 0.1348 3.98% check_for_negative_density() 10 0.03153 0.09205 0.1311 3.87% Castro::clean_state() 62 0.1166 0.1232 0.1276 3.76% Amr::InitializeInit() 1 0.05766 0.09375 0.1251 3.69% Amr::defBaseLevel() 1 0.05766 0.09375 0.1251 3.69% Castro::expand_state() 10 0.1032 0.1097 0.1212 3.57% Castro::do_old_sources() 10 0.1022 0.1064 0.1119 3.30% Castro::initData() 1 0.04109 0.07629 0.1069 3.15% FabArray::ParallelCopy_finish() 41 0.04548 0.05677 0.09996 2.95% Amr::FinalizeInit() 1 0.0264 0.058 0.09389 2.77% Castro::estTimeStep() 21 0.02513 0.05917 0.0924 2.73% amrex::Copy() 193 0.06348 0.07996 0.08929 2.63% Castro::initialize_advance() 10 0.05355 0.06945 0.07337 2.16% Castro::computeInitialDt() 2 0.002154 0.03386 0.06973 2.06% Castro::do_new_sources() 10 0.06098 0.06567 0.06964 2.05% FabArray::setVal() 143 0.05333 0.06536 0.0693 2.04% Castro::computeTemp() 63 0.06093 0.06506 0.06808 2.01% Castro::normalize_species() 62 0.05038 0.05286 0.05687 1.68% Castro::reset_internal_energy(MultiFab) 63 0.04314 0.0467 0.04895 1.44% Castro::reset_internal_energy(Fab) 1008 0.04285 0.0464 0.04863 1.43% FabArray::ParallelCopy_nowait() 41 0.03474 0.04139 0.04365 1.29% StateDataPhysBCFunct::() 41 0.0284 0.03115 0.03368 0.99% StateData::FillBoundary(geom) 41 0.02827 0.031 0.03356 0.99% Castro::construct_new_source() 50 0.02939 0.03119 0.03307 0.98% Gravity::interpolate_monopole_grav() 21 0.02686 0.02709 0.0278 0.82% Castro::construct_new_gravity_source() 10 0.02324 0.02479 0.02632 0.78% Castro::post_init() 1 0.02308 0.02352 0.0238 0.70% Amr::writePlotFile() 2 0.02199 0.02211 0.02261 0.67% Castro::finalize_do_advance() 10 0.01354 0.01776 0.02239 0.66% Castro::post_timestep() 10 0.01593 0.0171 0.01827 0.54% Castro::apply_source_to_state() 20 0.01055 0.01327 0.01811 0.53% FabArray::Saxpy() 20 0.01048 0.01321 0.01801 0.53% Castro::check_for_nan() 20 0.01044 0.01135 0.01232 0.36% MultiFab::contains_nan() 20 0.01042 0.01133 0.0123 0.36% VisMF::Write(FabArray) 2 0.008745 0.009402 0.01179 0.35% Castro::Castro() 1 0.009878 0.01086 0.01166 0.34% FabArray::setDomainBndry() 41 0.007049 0.009774 0.01147 0.34% Castro::construct_old_source() 50 0.006853 0.00968 0.01042 0.31% Castro::construct_old_gravity_source() 10 0.0068 0.009613 0.01035 0.31% Castro::computeNewDt() 9 0.008674 0.008704 0.008726 0.26% Castro::initMFs() 1 0.006502 0.007039 0.007633 0.23% Castro::enforce_min_density() 62 0.00556 0.005981 0.006547 0.19% Other 199 0.02046 0.02439 0.02785 0.82% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 32 B 35 B 41 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8660 KiB 8669 KiB 8673 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6779 KiB 6785 KiB 6787 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7133 KiB 7140 KiB 7142 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4574 KiB 4581 KiB 4604 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 209 KiB 226 KiB 249 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 14 KiB 16 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2812 KiB 2814 KiB 2815 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 235 KiB 240 KiB 249 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 38 KiB 43 KiB 61 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 80 KiB 80 KiB 81 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 68 KiB 70 KiB 74 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.10-25-gd4b3f266f527) finalized